Wall clock time and date at job start Tue Mar 31 2020 03:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42900 * 114.00296 * 2 1 4 4 C 1.52993 * 109.47328 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47240 * 180.02562 * 4 3 2 6 6 C 1.35199 * 126.00478 * 124.96578 * 5 4 3 7 7 C 1.34569 * 107.61508 * 180.02562 * 6 5 4 8 8 C 1.40481 * 108.04301 * 359.91097 * 7 6 5 9 9 N 1.30134 * 108.22716 * 0.12355 * 8 7 6 10 10 C 1.50948 * 123.48967 * 180.30000 * 8 7 6 11 11 H 1.08997 * 109.72030 * 256.92626 * 10 8 7 12 12 N 1.46507 * 109.71506 * 136.28244 * 10 8 7 13 13 C 1.34773 * 119.99696 * 86.25613 * 12 10 8 14 14 O 1.21691 * 120.00332 * 359.97438 * 13 12 10 15 15 C 1.46374 * 120.00160 * 179.97438 * 13 12 10 16 16 H 1.08005 * 119.99649 * 359.97438 * 15 13 12 17 17 C 1.40052 * 120.00357 * 179.97438 * 15 13 12 18 18 N 1.30664 * 119.99962 * 0.02562 * 17 15 13 19 19 Si 1.86801 * 119.99863 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47414 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47211 * 120.00390 * 19 17 15 22 22 H 1.48507 * 109.46692 * 240.00173 * 19 17 15 23 23 C 1.53372 * 108.20350 * 16.60736 * 10 8 7 24 24 C 1.53026 * 109.74563 * 309.34734 * 23 10 8 25 25 C 1.50889 * 128.32407 * 179.86103 * 7 6 5 26 26 H 1.09002 * 109.47004 * 300.00099 * 1 2 3 27 27 H 1.09002 * 109.47676 * 59.99797 * 1 2 3 28 28 H 1.09001 * 109.47532 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46970 * 59.99458 * 3 2 1 30 30 H 1.09003 * 109.46782 * 300.00269 * 3 2 1 31 31 H 1.08995 * 109.47548 * 60.00058 * 4 3 2 32 32 H 1.09003 * 109.47187 * 299.99749 * 4 3 2 33 33 H 1.08002 * 126.19193 * 0.10759 * 6 5 4 34 34 H 0.96994 * 120.00230 * 266.24993 * 12 10 8 35 35 H 0.97001 * 120.00014 * 180.02562 * 18 17 15 36 36 H 1.08997 * 109.42359 * 189.25758 * 23 10 8 37 37 H 1.08999 * 109.42169 * 69.43103 * 23 10 8 38 38 H 1.09004 * 109.42597 * 191.80078 * 24 23 10 39 39 H 1.08997 * 109.42951 * 311.64720 * 24 23 10 40 40 H 1.08995 * 109.71622 * 76.89870 * 25 7 6 41 41 H 1.08999 * 109.75636 * 316.26814 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 4.1313 2.5229 0.0000 6 6 5.0275 2.9935 0.8962 7 6 5.3241 4.2594 0.5493 8 6 4.5861 4.5793 -0.6024 9 7 3.8722 3.5416 -0.9296 10 6 4.6607 5.9188 -1.2941 11 1 3.7782 6.5094 -1.0482 12 7 4.7369 5.7228 -2.7440 13 6 3.6068 5.5882 -3.4660 14 8 2.5233 5.6290 -2.9136 15 6 3.6828 5.3929 -4.9147 16 1 4.6444 5.3571 -5.4050 17 6 2.5085 5.2525 -5.6649 18 7 1.3451 5.2964 -5.0718 19 14 2.6056 5.0026 -7.5136 20 1 4.0288 4.9909 -7.9375 21 1 1.9711 3.7088 -7.8722 22 1 1.8940 6.1102 -8.2008 23 6 5.9208 6.6422 -0.8029 24 6 5.9581 6.6346 0.7269 25 6 6.2687 5.2192 1.2300 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.6885 1.8464 0.8900 30 1 1.6885 1.8463 -0.8900 31 1 3.8567 0.6439 -0.8908 32 1 3.8574 0.6435 0.8891 33 1 5.4331 2.4510 1.7375 34 1 5.6005 5.6900 -3.1843 35 1 0.5318 5.1987 -5.5914 36 1 5.9102 7.6719 -1.1602 37 1 6.8043 6.1343 -1.1896 38 1 6.7308 7.3205 1.0741 39 1 4.9906 6.9531 1.1148 40 1 7.2981 4.9590 0.9837 41 1 6.1260 5.1732 2.3096 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331065110.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:48 Heat of formation + Delta-G solvation = -12.413050 kcal Electronic energy + Delta-G solvation = -23818.454435 eV Core-core repulsion = 20313.908382 eV Total energy + Delta-G solvation = -3504.546053 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.06178 -38.04401 -37.45489 -35.94334 -33.04347 -32.96554 -32.13204 -30.11570 -28.72707 -27.67183 -26.34119 -25.76658 -23.86994 -22.06043 -21.44582 -20.41677 -19.43224 -18.49784 -16.99048 -16.90072 -16.19346 -15.69881 -15.32894 -15.24717 -15.02841 -14.61660 -13.99860 -13.96193 -13.73123 -13.44876 -13.03714 -12.89044 -12.36113 -12.25831 -12.09134 -11.68294 -11.65276 -11.44709 -11.28350 -11.09559 -10.96240 -10.87609 -10.58421 -10.41831 -10.33966 -10.12142 -9.77525 -9.64784 -8.79979 -8.77064 -7.93204 -7.49572 -7.41254 -6.07850 -4.52209 2.30053 2.69297 3.18172 3.23870 3.26914 3.31122 3.83120 4.18615 4.64597 4.70678 4.84304 4.97101 4.98282 5.10090 5.15899 5.24269 5.30089 5.36665 5.38313 5.51596 5.60785 5.65554 5.71100 5.75617 5.87177 5.92773 5.96927 6.03285 6.12899 6.19514 6.34696 6.47640 6.55204 6.69540 6.99919 7.15227 7.41071 7.52841 8.01776 8.17276 8.37349 8.43794 9.13339 9.66275 10.71968 10.93275 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.009700 B = 0.006134 C = 0.004014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2885.977076 B = 4563.857136 C = 6974.470054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.395 6.395 3 C 0.050 3.950 4 C 0.147 3.853 5 N -0.392 5.392 6 C 0.044 3.956 7 C -0.240 4.240 8 C 0.076 3.924 9 N -0.236 5.236 10 C 0.234 3.766 11 H 0.091 0.909 12 N -0.756 5.756 13 C 0.561 3.439 14 O -0.569 6.569 15 C -0.544 4.544 16 H 0.065 0.935 17 C 0.089 3.911 18 N -0.768 5.768 19 Si 0.903 3.097 20 H -0.265 1.265 21 H -0.278 1.278 22 H -0.277 1.277 23 C -0.119 4.119 24 C -0.113 4.113 25 C -0.035 4.035 26 H 0.041 0.959 27 H 0.047 0.953 28 H 0.086 0.914 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.165 0.835 34 H 0.380 0.620 35 H 0.265 0.735 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.011 -5.050 13.105 15.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.313 6.313 3 C -0.028 4.028 4 C 0.025 3.975 5 N -0.176 5.176 6 C -0.099 4.099 7 C -0.252 4.252 8 C -0.097 4.097 9 N -0.054 5.054 10 C 0.125 3.875 11 H 0.109 0.891 12 N -0.410 5.410 13 C 0.365 3.635 14 O -0.450 6.450 15 C -0.581 4.581 16 H 0.083 0.917 17 C -0.130 4.130 18 N -0.397 5.397 19 Si 0.728 3.272 20 H -0.189 1.189 21 H -0.203 1.203 22 H -0.202 1.202 23 C -0.157 4.157 24 C -0.152 4.152 25 C -0.073 4.073 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.105 0.895 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.107 0.893 32 H 0.115 0.885 33 H 0.183 0.817 34 H 0.211 0.789 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.155 -5.859 12.660 14.872 hybrid contribution 0.753 0.100 -0.503 0.911 sum 5.908 -5.759 12.158 14.693 Atomic orbital electron populations 1.22747 0.80276 1.02614 1.00572 1.87719 1.20387 1.27508 1.95669 1.22719 0.92848 0.84805 1.02417 1.21175 0.92392 0.79715 1.04233 1.48718 1.34738 1.11916 1.22191 1.21851 0.95959 0.95507 0.96581 1.20082 1.07947 0.95611 1.01600 1.23234 0.94671 0.96837 0.94924 1.77584 1.21286 0.96003 1.10550 1.18992 0.98028 0.87750 0.82745 0.89085 1.46192 1.09831 1.80877 1.04092 1.18135 0.81843 0.76152 0.87405 1.90598 1.27482 1.54458 1.72454 1.20892 0.93268 1.53006 0.90934 0.91673 1.25662 0.94928 0.92873 0.99548 1.70039 0.97818 1.35917 1.35940 0.86389 0.79038 0.78185 0.83548 1.18853 1.20315 1.20248 1.21797 0.97664 1.00720 0.95562 1.21515 1.01928 0.96287 0.95420 1.19928 0.96645 0.92578 0.98140 0.94079 0.93429 0.89520 0.92997 0.90828 0.89310 0.88548 0.81744 0.78874 0.92431 0.90899 0.91552 0.91657 0.91638 0.91742 0.91785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.39 -5.64 10.70 -35.23 -0.38 -6.02 16 3 C 0.05 0.76 6.12 37.15 0.23 0.99 16 4 C 0.15 2.09 6.88 -4.04 -0.03 2.06 16 5 N -0.39 -6.78 3.69 -61.50 -0.23 -7.00 16 6 C 0.04 0.64 11.41 -17.37 -0.20 0.45 16 7 C -0.24 -3.82 5.89 -104.98 -0.62 -4.44 16 8 C 0.08 1.53 6.68 -82.35 -0.55 0.98 16 9 N -0.24 -5.29 12.40 33.75 0.42 -4.87 16 10 C 0.23 4.71 2.83 -68.76 -0.19 4.52 16 11 H 0.09 2.07 7.57 -51.93 -0.39 1.68 16 12 N -0.76 -17.55 5.07 -56.03 -0.28 -17.83 16 13 C 0.56 16.34 7.72 -12.99 -0.10 16.23 16 14 O -0.57 -18.68 14.68 5.20 0.08 -18.60 16 15 C -0.54 -15.85 9.54 -35.63 -0.34 -16.19 16 16 H 0.07 1.76 7.85 -52.48 -0.41 1.35 16 17 C 0.09 2.56 5.50 -17.37 -0.10 2.46 16 18 N -0.77 -23.63 11.83 55.55 0.66 -22.97 16 19 Si 0.90 20.81 29.56 -169.99 -5.02 15.79 16 20 H -0.26 -5.89 7.11 56.52 0.40 -5.48 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 23 C -0.12 -1.73 5.35 -26.52 -0.14 -1.87 16 24 C -0.11 -1.37 5.87 -26.52 -0.16 -1.52 16 25 C -0.03 -0.41 6.28 -27.59 -0.17 -0.59 16 26 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 31 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.10 1.02 8.07 -51.93 -0.42 0.60 16 33 H 0.17 1.66 8.06 -52.49 -0.42 1.24 16 34 H 0.38 7.86 8.59 -40.82 -0.35 7.51 16 35 H 0.26 7.41 8.29 -40.82 -0.34 7.07 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.83 8.10 -51.93 -0.42 0.41 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 346.38 15.07 5.22 5.22 Total: -1.00 -37.57 346.38 -7.00 -44.57 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -6.20 Total: 7.12 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: -1.25 Total: 4.60 kcal Atomic # 7 Polarization: -53.24 SS G_CDS: 0.56 Total: -52.68 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: -0.30 Total: -24.62 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -37.57 -7.00 -44.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331065110.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.153 kcal (2) G-P(sol) polarization free energy of solvation -37.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds