Wall clock time and date at job start Tue Mar 31 2020 03:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86804 * 119.99997 * 2 1 4 4 H 1.48499 * 109.46830 * 240.00026 * 3 2 1 5 5 H 1.48500 * 109.46927 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47190 * 120.00091 * 3 2 1 7 7 C 1.37875 * 120.00023 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00123 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99884 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47135 * 180.02562 * 9 7 2 11 11 C 1.30093 * 120.00491 * 115.44508 * 10 9 7 12 12 O 1.35091 * 120.00229 * 185.31989 * 11 10 9 13 13 N 1.37346 * 119.99723 * 5.31915 * 11 10 9 14 14 C 1.46929 * 120.63092 * 265.14478 * 13 11 10 15 15 C 1.53192 * 108.77773 * 233.33448 * 14 13 11 16 16 C 1.53046 * 109.31171 * 305.36579 * 15 14 13 17 17 C 1.53040 * 109.53640 * 61.36130 * 16 15 14 18 18 H 1.09005 * 109.49293 * 58.59005 * 17 16 15 19 19 C 1.53003 * 109.49531 * 178.65021 * 17 16 15 20 20 N 1.46496 * 109.47116 * 185.00245 * 19 17 16 21 21 C 1.35310 * 125.86834 * 124.71511 * 20 19 17 22 22 C 1.35349 * 106.17695 * 179.90524 * 21 20 19 23 23 N 1.33768 * 106.49692 * 0.35126 * 22 21 20 24 24 N 1.28634 * 108.88633 * 359.77564 * 23 22 21 25 25 C 1.46931 * 120.63094 * 84.86599 * 13 11 10 26 26 H 0.97004 * 119.99659 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.47295 * 60.00239 * 9 7 2 28 28 H 1.09004 * 109.47129 * 299.99979 * 9 7 2 29 29 H 0.96689 * 114.00457 * 359.97438 * 12 11 10 30 30 H 1.08998 * 109.58695 * 353.12453 * 14 13 11 31 31 H 1.09004 * 109.58604 * 113.54521 * 14 13 11 32 32 H 1.08995 * 109.49421 * 65.31437 * 15 14 13 33 33 H 1.08996 * 109.49486 * 185.38377 * 15 14 13 34 34 H 1.08992 * 109.45746 * 181.38516 * 16 15 14 35 35 H 1.09004 * 109.45961 * 301.34484 * 16 15 14 36 36 H 1.09005 * 109.46910 * 305.00297 * 19 17 16 37 37 H 1.09002 * 109.46956 * 65.00114 * 19 17 16 38 38 H 1.08008 * 126.91476 * 0.02562 * 21 20 19 39 39 H 1.08004 * 126.75225 * 180.12198 * 22 21 20 40 40 H 1.08996 * 109.58556 * 246.45455 * 25 13 11 41 41 H 1.08993 * 109.58289 * 6.87970 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.2579 -4.4217 1.0168 12 8 3.2065 -5.3822 1.0656 13 7 1.3512 -4.2992 2.0412 14 6 1.6792 -3.5182 3.2417 15 6 1.4479 -4.3933 4.4777 16 6 0.0173 -4.9366 4.4526 17 6 -0.1802 -5.8007 3.2050 18 1 0.5402 -6.6187 3.2114 19 6 -1.6001 -6.3706 3.1982 20 7 -1.7511 -7.2918 2.0691 21 6 -2.1529 -8.5815 2.1464 22 6 -2.1532 -9.0531 0.8778 23 7 -1.7492 -8.0444 0.0975 24 7 -1.5189 -7.0150 0.8337 25 6 0.0326 -4.9416 1.9547 26 1 -0.4850 0.8401 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8897 29 1 3.7976 -5.3905 0.3005 30 1 2.7238 -3.2096 3.2028 31 1 1.0377 -2.6383 3.2917 32 1 2.1528 -5.2245 4.4719 33 1 1.5954 -3.7972 5.3782 34 1 -0.1577 -5.5396 5.3435 35 1 -0.6868 -4.1047 4.4333 36 1 -1.7813 -6.9057 4.1304 37 1 -2.3180 -5.5562 3.1012 38 1 -2.4216 -9.1248 3.0404 39 1 -2.4226 -10.0491 0.5586 40 1 -0.7430 -4.1779 1.8997 41 1 -0.0090 -5.5722 1.0667 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331120967.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:17 Heat of formation + Delta-G solvation = 96.243806 kcal Electronic energy + Delta-G solvation = -24198.834086 eV Core-core repulsion = 20731.292499 eV Total energy + Delta-G solvation = -3467.541587 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.27171 -39.23503 -37.40066 -35.16125 -34.10041 -32.58117 -31.43677 -31.15810 -30.78316 -27.09543 -26.88513 -24.57262 -22.82749 -22.78903 -22.43542 -21.32721 -20.50615 -19.14255 -17.61331 -17.00235 -16.24336 -16.20312 -15.77159 -15.35493 -14.94174 -14.70677 -14.34273 -14.27836 -13.95952 -13.57698 -13.43487 -12.91286 -12.78406 -12.35025 -12.13000 -11.94458 -11.66394 -11.65539 -11.16665 -10.92860 -10.90723 -10.87032 -10.70760 -10.62604 -10.39211 -10.03909 -10.03527 -9.64732 -9.41253 -8.75670 -8.17936 -7.89962 -7.51831 -5.98224 -4.00028 1.56919 2.28067 2.58466 3.23302 3.34530 3.38326 3.40108 3.44281 4.18632 4.39720 4.47836 4.49271 4.77054 4.87361 4.98827 4.99186 5.11379 5.15161 5.20175 5.35953 5.38222 5.57402 5.64412 5.70209 5.81979 5.95697 6.02494 6.05895 6.16721 6.17943 6.32200 6.35868 6.54844 6.58105 7.47599 7.61426 7.74580 7.90533 8.05536 8.34388 8.42329 8.52355 9.01562 9.27231 9.64460 11.11384 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.017712 B = 0.004370 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.451608 B = 6406.218089 C = 6745.889954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.504 4.504 8 H 0.057 0.943 9 C 0.195 3.805 10 N -0.563 5.563 11 C 0.519 3.481 12 O -0.507 6.507 13 N -0.654 5.654 14 C 0.145 3.855 15 C -0.134 4.134 16 C -0.105 4.105 17 C -0.118 4.118 18 H 0.080 0.920 19 C 0.118 3.882 20 N -0.287 5.287 21 C -0.057 4.057 22 C -0.056 4.056 23 N -0.274 5.274 24 N -0.071 5.071 25 C 0.148 3.852 26 H 0.261 0.739 27 H 0.032 0.968 28 H 0.021 0.979 29 H 0.403 0.597 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.187 0.813 39 H 0.187 0.813 40 H 0.060 0.940 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.224 -16.245 12.907 21.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.726 3.274 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.543 4.543 8 H 0.075 0.925 9 C 0.069 3.931 10 N -0.299 5.299 11 C 0.204 3.796 12 O -0.301 6.301 13 N -0.393 5.393 14 C 0.021 3.979 15 C -0.173 4.173 16 C -0.143 4.143 17 C -0.139 4.139 18 H 0.098 0.902 19 C -0.004 4.004 20 N -0.081 5.081 21 C -0.208 4.208 22 C -0.213 4.213 23 N -0.140 5.140 24 N -0.051 5.051 25 C 0.023 3.977 26 H 0.071 0.929 27 H 0.050 0.950 28 H 0.039 0.961 29 H 0.257 0.743 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.204 0.796 39 H 0.204 0.796 40 H 0.078 0.922 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.744 -15.038 11.602 19.358 hybrid contribution -0.132 0.095 1.132 1.143 sum -3.876 -14.942 12.733 20.011 Atomic orbital electron populations 1.69959 1.05921 1.26748 1.50999 1.24945 0.94883 0.99031 0.95528 0.86562 0.79442 0.82773 0.78631 1.20203 1.21278 1.20352 1.21069 0.93243 0.89735 1.50231 0.92521 1.19572 0.90304 0.85903 0.97346 1.72283 1.28162 1.07379 1.22082 1.19889 0.86161 0.88029 0.85494 1.84673 1.43615 1.53078 1.48709 1.45917 1.12622 1.60119 1.20621 1.21277 1.00951 0.92749 0.82926 1.21977 0.96122 1.00317 0.98912 1.21426 0.98310 0.99089 0.95519 1.21974 0.93675 0.99492 0.98749 0.90173 1.22308 1.00264 0.92683 0.85107 1.47626 1.42259 1.09956 1.08246 1.23656 1.08783 0.86498 1.01837 1.23615 1.06676 1.01110 0.89918 1.75194 1.14890 0.97225 1.26661 1.78390 1.18536 1.20964 0.87194 1.21499 0.84685 0.94944 0.96547 0.92915 0.94975 0.96132 0.74265 0.91171 0.91818 0.91871 0.91158 0.92011 0.91092 0.87499 0.87799 0.79559 0.79631 0.92168 0.89016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 7 C -0.50 -14.87 9.39 -34.44 -0.32 -15.19 16 8 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 9 C 0.20 5.45 6.07 -5.19 -0.03 5.42 16 10 N -0.56 -13.85 10.48 -63.70 -0.67 -14.52 16 11 C 0.52 10.91 7.34 -88.57 -0.65 10.26 16 12 O -0.51 -9.17 13.62 -16.98 -0.23 -9.40 16 13 N -0.65 -12.18 1.56 -175.37 -0.27 -12.45 16 14 C 0.15 2.41 6.31 -3.71 -0.02 2.38 16 15 C -0.13 -1.60 6.08 -26.61 -0.16 -1.76 16 16 C -0.11 -1.05 5.17 -26.69 -0.14 -1.19 16 17 C -0.12 -1.36 2.53 -90.50 -0.23 -1.59 16 18 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 19 C 0.12 1.04 5.94 -4.04 -0.02 1.02 16 20 N -0.29 -3.36 3.44 -61.26 -0.21 -3.57 16 21 C -0.06 -0.52 11.57 -17.05 -0.20 -0.72 16 22 C -0.06 -0.62 12.05 -17.74 -0.21 -0.83 16 23 N -0.27 -4.34 12.41 30.23 0.38 -3.97 16 24 N -0.07 -1.13 10.35 60.35 0.62 -0.51 16 25 C 0.15 2.45 4.92 -3.71 -0.02 2.44 16 26 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 27 H 0.03 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.02 0.58 6.04 -51.93 -0.31 0.27 16 29 H 0.40 5.93 8.97 45.56 0.41 6.34 16 30 H 0.07 1.22 7.93 -51.93 -0.41 0.81 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.11 0.54 8.07 -51.93 -0.42 0.12 16 37 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.19 0.84 8.06 -52.48 -0.42 0.41 16 39 H 0.19 1.37 8.06 -52.48 -0.42 0.94 16 40 H 0.06 1.07 8.05 -51.93 -0.42 0.65 16 41 H 0.09 1.73 5.63 -51.93 -0.29 1.44 16 LS Contribution 340.87 15.07 5.14 5.14 Total: -1.00 -36.25 340.87 -6.86 -43.11 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -5.22 Total: 3.50 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -2.11 Total: 1.80 kcal Atomic # 7 Polarization: -61.78 SS G_CDS: 0.58 Total: -61.20 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: -0.23 Total: -9.40 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -36.25 -6.86 -43.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331120967.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.349 kcal (2) G-P(sol) polarization free energy of solvation -36.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds