Wall clock time and date at job start Tue Mar 31 2020 03:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00182 * 2 1 4 4 H 1.48500 * 109.47130 * 270.01023 * 3 2 1 5 5 H 1.48504 * 109.46627 * 30.00532 * 3 2 1 6 6 H 1.48495 * 109.47268 * 150.00101 * 3 2 1 7 7 C 1.37879 * 120.00027 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00354 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00041 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47306 * 180.02562 * 9 7 2 11 11 C 1.30106 * 120.00015 * 115.52005 * 10 9 7 12 12 O 1.35091 * 119.99937 * 185.47169 * 11 10 9 13 13 N 1.37337 * 119.99812 * 5.46877 * 11 10 9 14 14 C 1.46919 * 120.63046 * 85.33020 * 13 11 10 15 15 C 1.53191 * 108.77629 * 126.36677 * 14 13 11 16 16 C 1.53038 * 109.31532 * 54.63578 * 15 14 13 17 17 C 1.53043 * 109.53720 * 298.63510 * 16 15 14 18 18 H 1.09005 * 109.49492 * 301.38432 * 17 16 15 19 19 C 1.52999 * 109.50120 * 181.31373 * 17 16 15 20 20 N 1.46496 * 109.47132 * 175.00151 * 19 17 16 21 21 C 1.35309 * 125.87110 * 124.72233 * 20 19 17 22 22 C 1.35348 * 106.17789 * 179.90336 * 21 20 19 23 23 N 1.33772 * 106.49707 * 0.34676 * 22 21 20 24 24 N 1.28637 * 108.88584 * 359.77712 * 23 22 21 25 25 C 1.46930 * 120.63051 * 265.04666 * 13 11 10 26 26 H 0.96997 * 119.99981 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47647 * 60.00169 * 9 7 2 28 28 H 1.09005 * 109.47348 * 300.00233 * 9 7 2 29 29 H 0.96696 * 114.00218 * 185.02256 * 12 11 10 30 30 H 1.09001 * 109.58893 * 246.15435 * 14 13 11 31 31 H 1.09000 * 109.58850 * 6.43545 * 14 13 11 32 32 H 1.09001 * 109.50265 * 174.58734 * 15 14 13 33 33 H 1.09007 * 109.50057 * 294.64945 * 15 14 13 34 34 H 1.08995 * 109.46311 * 58.65282 * 16 15 14 35 35 H 1.09002 * 109.46377 * 178.63381 * 16 15 14 36 36 H 1.08996 * 109.47182 * 295.00137 * 19 17 16 37 37 H 1.08999 * 109.46635 * 55.00467 * 19 17 16 38 38 H 1.07998 * 126.91031 * 0.02562 * 21 20 19 39 39 H 1.07997 * 126.75184 * 180.11920 * 22 21 20 40 40 H 1.09004 * 109.58564 * 353.42368 * 25 13 11 41 41 H 1.08994 * 109.58529 * 113.84215 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6525 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.2568 -4.4226 1.0163 12 8 3.2073 -5.3812 1.0667 13 7 1.3473 -4.3029 2.0383 14 6 0.0342 -4.9562 1.9522 15 6 -0.1711 -5.8174 3.2024 16 6 0.0196 -4.9519 4.4501 17 6 1.4456 -4.3967 4.4748 18 1 2.1575 -5.2222 4.4691 19 6 1.6455 -3.5585 5.7390 20 7 3.0427 -3.1264 5.8225 21 6 3.4718 -1.8485 5.9398 22 6 4.8233 -1.9071 5.9847 23 7 5.1509 -3.2003 5.8861 24 7 4.0735 -3.8968 5.7915 25 6 1.6713 -3.5241 3.2414 26 1 -0.4850 0.8400 0.0004 27 1 0.6241 -2.5568 -0.8903 28 1 0.6247 -2.5571 0.8897 29 1 3.1211 -5.9813 1.8201 30 1 -0.7479 -4.1989 1.8977 31 1 -0.0035 -5.5850 1.0626 32 1 -1.1794 -6.2314 3.1975 33 1 0.5557 -6.6298 3.2080 34 1 -0.6913 -4.1260 4.4313 35 1 -0.1498 -5.5567 5.3409 36 1 0.9963 -2.6837 5.7013 37 1 1.3974 -4.1576 6.6151 38 1 2.8591 -0.9606 5.9898 39 1 5.5035 -1.0734 6.0777 40 1 2.7144 -3.2101 3.2035 41 1 1.0255 -2.6476 3.2941 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331120968.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:19 Heat of formation + Delta-G solvation = 92.455840 kcal Electronic energy + Delta-G solvation = -24414.796877 eV Core-core repulsion = 20947.091031 eV Total energy + Delta-G solvation = -3467.705845 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.20299 -39.50328 -37.37211 -35.18750 -34.28378 -32.64498 -31.46391 -31.14421 -30.96399 -27.26714 -26.91709 -24.57689 -23.12620 -22.84184 -22.55071 -21.24627 -20.19235 -19.24541 -17.84233 -17.49073 -16.32195 -16.27631 -15.57854 -15.17410 -14.92400 -14.82469 -14.44879 -14.37626 -13.96422 -13.51697 -13.28323 -13.08949 -12.91818 -12.76886 -12.26502 -12.18492 -11.78722 -11.71589 -11.17531 -11.02239 -10.96246 -10.87234 -10.84124 -10.81186 -10.57631 -10.15317 -10.04738 -9.69509 -9.33837 -8.77234 -8.22874 -7.98914 -7.73091 -6.07868 -4.09337 1.63499 2.32934 2.64750 3.15001 3.27407 3.33767 3.40348 3.47322 4.17332 4.34531 4.43264 4.46107 4.54413 4.67659 4.85715 4.96208 5.05669 5.10859 5.23619 5.26991 5.28593 5.44650 5.46964 5.58063 5.71644 5.81427 5.90405 5.91463 5.95894 6.12304 6.19248 6.31793 6.57832 6.80808 7.25984 7.37155 7.45648 7.56239 7.88767 8.18534 8.39499 8.55000 8.92317 9.29362 9.57370 11.01763 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.010912 B = 0.006346 C = 0.004887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.416197 B = 4411.478254 C = 5727.745551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.058 3.942 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.504 4.504 8 H 0.059 0.941 9 C 0.195 3.805 10 N -0.516 5.516 11 C 0.511 3.489 12 O -0.488 6.488 13 N -0.691 5.691 14 C 0.140 3.860 15 C -0.132 4.132 16 C -0.106 4.106 17 C -0.119 4.119 18 H 0.089 0.911 19 C 0.121 3.879 20 N -0.287 5.287 21 C -0.045 4.045 22 C -0.054 4.054 23 N -0.274 5.274 24 N -0.085 5.085 25 C 0.151 3.849 26 H 0.261 0.739 27 H 0.036 0.964 28 H 0.019 0.981 29 H 0.390 0.610 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.108 0.892 37 H 0.100 0.900 38 H 0.190 0.810 39 H 0.187 0.813 40 H 0.066 0.934 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.446 -8.169 15.522 17.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.143 4.143 3 Si 0.726 3.274 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.542 4.542 8 H 0.077 0.923 9 C 0.068 3.932 10 N -0.248 5.248 11 C 0.197 3.803 12 O -0.278 6.278 13 N -0.434 5.434 14 C 0.015 3.985 15 C -0.171 4.171 16 C -0.144 4.144 17 C -0.140 4.140 18 H 0.108 0.892 19 C -0.001 4.001 20 N -0.081 5.081 21 C -0.196 4.196 22 C -0.211 4.211 23 N -0.140 5.140 24 N -0.065 5.065 25 C 0.026 3.974 26 H 0.071 0.929 27 H 0.054 0.946 28 H 0.037 0.963 29 H 0.242 0.758 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.127 0.873 37 H 0.118 0.882 38 H 0.207 0.793 39 H 0.205 0.795 40 H 0.084 0.916 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.436 -9.107 13.984 16.750 hybrid contribution -0.784 1.957 1.217 2.434 sum -2.220 -7.150 15.201 16.945 Atomic orbital electron populations 1.69957 1.05923 1.26755 1.51161 1.24934 0.94905 0.99087 0.95411 0.86488 0.79715 0.82830 0.78394 1.20450 1.21194 1.19838 1.21111 0.93484 0.89536 1.50106 0.92285 1.19720 0.90156 0.85949 0.97340 1.71955 1.26410 1.05643 1.20805 1.20310 0.85165 0.89610 0.85178 1.84868 1.49359 1.42451 1.51170 1.46998 1.15378 1.61106 1.19921 1.21284 0.85239 0.95144 0.96788 1.21949 1.01794 0.98215 0.95139 1.21426 0.94831 0.99808 0.98369 1.21939 0.99263 0.99254 0.93562 0.89248 1.22235 0.75643 1.01648 1.00572 1.47470 1.08925 1.05482 1.46209 1.23736 0.97096 0.89486 1.09318 1.23596 0.93908 0.96042 1.07557 1.75099 1.19159 1.03423 1.16359 1.78235 0.88644 1.20146 1.19508 1.21125 1.00818 0.92601 0.82851 0.92917 0.94626 0.96300 0.75792 0.92221 0.91234 0.90985 0.91802 0.91196 0.91696 0.87349 0.88196 0.79317 0.79546 0.91564 0.92064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.18 13.29 55.43 0.74 -25.44 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.50 -14.77 9.39 -34.44 -0.32 -15.10 16 8 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 9 C 0.19 5.31 6.07 -5.19 -0.03 5.27 16 10 N -0.52 -12.99 10.60 -63.71 -0.68 -13.67 16 11 C 0.51 10.45 7.30 -88.56 -0.65 9.81 16 12 O -0.49 -8.88 13.62 -16.98 -0.23 -9.11 16 13 N -0.69 -11.41 1.46 -175.63 -0.26 -11.67 16 14 C 0.14 1.91 6.14 -3.72 -0.02 1.89 16 15 C -0.13 -1.25 6.08 -26.61 -0.16 -1.41 16 16 C -0.11 -0.90 5.17 -26.69 -0.14 -1.04 16 17 C -0.12 -1.23 2.37 -90.72 -0.22 -1.45 16 18 H 0.09 1.01 8.00 -51.93 -0.42 0.59 16 19 C 0.12 1.04 5.85 -4.04 -0.02 1.02 16 20 N -0.29 -3.41 3.00 -61.27 -0.18 -3.60 16 21 C -0.05 -0.51 11.57 -17.05 -0.20 -0.71 16 22 C -0.05 -0.68 12.05 -17.74 -0.21 -0.90 16 23 N -0.27 -4.31 12.41 30.23 0.38 -3.94 16 24 N -0.09 -1.27 12.82 60.35 0.77 -0.49 16 25 C 0.15 2.29 5.38 -3.93 -0.02 2.27 16 26 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 27 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.02 0.51 6.09 -51.93 -0.32 0.20 16 29 H 0.39 5.01 8.99 45.56 0.41 5.42 16 30 H 0.06 0.90 8.08 -51.93 -0.42 0.48 16 31 H 0.07 0.97 7.93 -51.93 -0.41 0.56 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.11 0.75 8.07 -51.93 -0.42 0.33 16 37 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.19 1.48 8.06 -52.49 -0.42 1.05 16 39 H 0.19 1.78 8.06 -52.49 -0.42 1.36 16 40 H 0.07 1.20 7.71 -51.93 -0.40 0.80 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 344.99 15.07 5.20 5.20 Total: -1.00 -35.91 344.99 -6.70 -42.61 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -5.32 Total: 2.14 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: -2.09 Total: 1.21 kcal Atomic # 7 Polarization: -59.57 SS G_CDS: 0.77 Total: -58.80 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: -0.23 Total: -9.11 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -35.91 -6.70 -42.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331120968.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.064 kcal (2) G-P(sol) polarization free energy of solvation -35.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds