Wall clock time and date at job start Tue Mar 31 2020 03:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00262 * 2 1 4 4 H 1.48500 * 109.47027 * 270.00123 * 3 2 1 5 5 H 1.48497 * 109.47153 * 29.99916 * 3 2 1 6 6 H 1.48498 * 109.47338 * 150.00472 * 3 2 1 7 7 C 1.37879 * 119.99612 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99777 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00143 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.47092 * 180.02562 * 9 7 2 11 11 C 1.30094 * 119.99810 * 115.44281 * 10 9 7 12 12 O 1.35105 * 120.00025 * 185.30993 * 11 10 9 13 13 N 1.37346 * 120.00211 * 5.30391 * 11 10 9 14 14 C 1.46924 * 120.63125 * 265.13668 * 13 11 10 15 15 C 1.53194 * 108.77428 * 233.63216 * 14 13 11 16 16 C 1.53039 * 109.30981 * 305.36609 * 15 14 13 17 17 C 1.53001 * 109.46026 * 181.39042 * 16 15 14 18 18 N 1.46497 * 109.47527 * 175.00278 * 17 16 15 19 19 C 1.34428 * 126.82966 * 124.99634 * 18 17 16 20 20 N 1.30829 * 108.07991 * 179.97438 * 19 18 17 21 21 C 1.33237 * 109.83145 * 0.02562 * 20 19 18 22 22 N 1.30714 * 108.94547 * 0.25978 * 21 20 19 23 23 C 1.53042 * 109.54085 * 61.36640 * 16 15 14 24 24 C 1.46925 * 120.62654 * 85.16105 * 13 11 10 25 25 H 0.97001 * 119.99888 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.47244 * 60.00139 * 9 7 2 27 27 H 1.09001 * 109.47404 * 299.99776 * 9 7 2 28 28 H 0.96696 * 113.99371 * 359.97438 * 12 11 10 29 29 H 1.09001 * 109.58408 * 113.84456 * 14 13 11 30 30 H 1.08993 * 109.58677 * 353.41604 * 14 13 11 31 31 H 1.08997 * 109.49594 * 185.41573 * 15 14 13 32 32 H 1.09001 * 109.49903 * 65.31470 * 15 14 13 33 33 H 1.09000 * 109.46543 * 301.35707 * 16 15 14 34 34 H 1.08997 * 109.47736 * 54.99545 * 17 16 15 35 35 H 1.09003 * 109.46805 * 294.99808 * 17 16 15 36 36 H 1.08004 * 125.95959 * 359.97438 * 19 18 17 37 37 H 1.07995 * 125.52955 * 179.97438 * 21 20 19 38 38 H 1.09003 * 109.49076 * 58.58534 * 23 16 15 39 39 H 1.09001 * 109.49817 * 178.68226 * 23 16 15 40 40 H 1.08997 * 109.58829 * 246.15488 * 24 13 11 41 41 H 1.08999 * 109.59055 * 6.58275 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.6999 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 2.2576 -4.4216 1.0169 12 8 3.2062 -5.3824 1.0657 13 7 1.3512 -4.2989 2.0414 14 6 1.6796 -3.5180 3.2419 15 6 1.4553 -4.3955 4.4774 16 6 0.0268 -4.9443 4.4558 17 6 -0.2120 -5.7932 5.7061 18 7 -1.6129 -6.2202 5.7463 19 6 -2.0685 -7.4811 5.8438 20 7 -3.3761 -7.4411 5.8488 21 6 -3.7901 -6.1781 5.7559 22 7 -2.7468 -5.3937 5.6846 23 6 -0.1710 -5.8078 3.2078 24 6 0.0350 -4.9463 1.9579 25 1 -0.4850 0.8401 0.0004 26 1 0.6239 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8897 28 1 3.7972 -5.3908 0.3004 29 1 1.0349 -2.6407 3.2948 30 1 2.7229 -3.2054 3.2004 31 1 1.6026 -3.7999 5.3783 32 1 2.1635 -5.2241 4.4687 33 1 -0.6806 -4.1153 4.4393 34 1 0.0136 -5.2034 6.5944 35 1 0.4344 -6.6704 5.6786 36 1 -1.4610 -8.3719 5.9070 37 1 -4.8204 -5.8551 5.7374 38 1 0.5526 -6.6230 3.2111 39 1 -1.1811 -6.2173 3.2051 40 1 -0.7439 -4.1856 1.9062 41 1 -0.0069 -5.5761 1.0692 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331134298.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:40 Heat of formation + Delta-G solvation = 82.390753 kcal Electronic energy + Delta-G solvation = -23741.680735 eV Core-core repulsion = 20273.538434 eV Total energy + Delta-G solvation = -3468.142300 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.18287 -39.25986 -37.48568 -35.13435 -33.84208 -32.42951 -31.33990 -31.16227 -30.89989 -27.67731 -26.61295 -23.80687 -23.21587 -22.61788 -22.13079 -21.52103 -20.44471 -19.12007 -17.40478 -17.06762 -16.29256 -15.98502 -15.85484 -15.14631 -15.02278 -14.52474 -14.32534 -14.30312 -14.01748 -13.72328 -13.46326 -12.99273 -12.84510 -12.36437 -12.15907 -12.14713 -11.91598 -11.73166 -11.09991 -11.06518 -10.92422 -10.77639 -10.57929 -10.49754 -10.10196 -10.08796 -9.90991 -9.73564 -9.69858 -8.83389 -8.25538 -7.99666 -7.59804 -6.03939 -4.06139 1.51771 2.18068 2.84891 3.13172 3.29891 3.33877 3.36077 3.40739 4.16227 4.18068 4.43287 4.56670 4.67302 4.78207 4.83005 4.98493 5.12337 5.21618 5.30686 5.32683 5.46204 5.54315 5.68904 5.79328 5.92644 5.94882 6.02688 6.10476 6.15061 6.25412 6.28287 6.31357 6.49455 6.66525 7.38777 7.51835 7.65855 7.82647 7.95140 7.98322 8.25326 8.34839 8.94851 9.18046 9.58579 11.05771 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.018538 B = 0.003825 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.040375 B = 7318.793524 C = 8053.134877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.899 3.101 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.506 4.506 8 H 0.057 0.943 9 C 0.194 3.806 10 N -0.565 5.565 11 C 0.518 3.482 12 O -0.506 6.506 13 N -0.656 5.656 14 C 0.151 3.849 15 C -0.128 4.128 16 C -0.095 4.095 17 C 0.133 3.867 18 N -0.371 5.371 19 C 0.249 3.751 20 N -0.551 5.551 21 C 0.192 3.808 22 N -0.310 5.310 23 C -0.126 4.126 24 C 0.152 3.848 25 H 0.262 0.738 26 H 0.031 0.969 27 H 0.021 0.979 28 H 0.403 0.597 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.215 0.785 37 H 0.215 0.785 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.627 -14.533 13.081 19.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.726 3.274 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.544 4.544 8 H 0.076 0.924 9 C 0.068 3.932 10 N -0.301 5.301 11 C 0.203 3.797 12 O -0.300 6.300 13 N -0.395 5.395 14 C 0.026 3.974 15 C -0.168 4.168 16 C -0.114 4.114 17 C 0.011 3.989 18 N -0.162 5.162 19 C -0.048 4.048 20 N -0.279 5.279 21 C -0.111 4.111 22 N -0.138 5.138 23 C -0.165 4.165 24 C 0.028 3.972 25 H 0.071 0.929 26 H 0.049 0.951 27 H 0.039 0.961 28 H 0.257 0.743 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.118 0.882 36 H 0.232 0.768 37 H 0.231 0.769 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.765 -13.913 12.736 18.878 hybrid contribution 0.437 0.836 0.134 0.953 sum -0.327 -13.077 12.871 18.351 Atomic orbital electron populations 1.69955 1.05954 1.26784 1.50837 1.24953 0.94895 0.99123 0.95432 0.86489 0.79666 0.83030 0.78178 1.20597 1.21184 1.19938 1.21081 0.93277 0.89657 1.50419 0.92439 1.19588 0.90330 0.86015 0.97292 1.72298 1.28074 1.07327 1.22389 1.19926 0.86239 0.88020 0.85545 1.84688 1.43600 1.52965 1.48742 1.45948 1.12707 1.60234 1.20646 1.21206 1.01017 0.92619 0.82546 1.22010 0.94968 1.00421 0.99352 1.21405 0.98792 0.98559 0.92693 1.22039 0.75420 1.00934 1.00525 1.50600 1.07380 1.05240 1.52938 1.26015 0.91768 0.89867 0.97177 1.70519 1.09553 1.22700 1.25108 1.25999 0.99705 0.86674 0.98687 1.78105 0.92268 1.18396 1.25052 1.21993 1.00999 0.98274 0.95219 1.21163 0.84751 0.94966 0.96359 0.92874 0.95113 0.96063 0.74255 0.91757 0.90923 0.91135 0.91471 0.89257 0.89256 0.88202 0.76846 0.76897 0.91734 0.92130 0.92141 0.91503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.59 13.29 55.43 0.74 -25.86 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.51 -14.59 9.39 -34.44 -0.32 -14.91 16 8 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 9 C 0.19 5.23 6.07 -5.19 -0.03 5.20 16 10 N -0.57 -13.12 10.48 -63.70 -0.67 -13.79 16 11 C 0.52 10.08 7.33 -88.56 -0.65 9.43 16 12 O -0.51 -8.23 13.62 -17.02 -0.23 -8.46 16 13 N -0.66 -11.47 1.55 -175.37 -0.27 -11.74 16 14 C 0.15 2.39 6.31 -3.71 -0.02 2.36 16 15 C -0.13 -1.43 5.36 -26.61 -0.14 -1.57 16 16 C -0.10 -1.04 2.25 -90.58 -0.20 -1.24 16 17 C 0.13 1.08 5.94 -4.04 -0.02 1.06 16 18 N -0.37 -3.78 3.12 -62.63 -0.20 -3.98 16 19 C 0.25 2.27 12.63 -90.66 -1.14 1.13 16 20 N -0.55 -6.35 11.19 -15.83 -0.18 -6.53 16 21 C 0.19 2.18 13.03 -91.81 -1.20 0.98 16 22 N -0.31 -3.93 12.52 29.29 0.37 -3.57 16 23 C -0.13 -1.51 5.26 -26.61 -0.14 -1.65 16 24 C 0.15 2.39 6.12 -3.71 -0.02 2.37 16 25 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 26 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.02 0.59 6.07 -51.93 -0.32 0.27 16 28 H 0.40 5.22 8.97 45.56 0.41 5.63 16 29 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.07 1.20 7.93 -51.93 -0.41 0.79 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 1.21 8.09 -51.93 -0.42 0.79 16 34 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.10 0.55 8.09 -51.93 -0.42 0.13 16 36 H 0.22 1.01 8.06 -52.48 -0.42 0.58 16 37 H 0.21 1.73 8.06 -52.49 -0.42 1.30 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.75 7.72 -51.93 -0.40 0.35 16 40 H 0.06 1.06 8.07 -51.93 -0.42 0.64 16 41 H 0.07 1.06 7.93 -51.93 -0.41 0.65 16 LS Contribution 345.71 15.07 5.21 5.21 Total: -1.00 -34.87 345.71 -9.57 -44.44 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -5.32 Total: 2.82 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: -4.00 Total: 4.69 kcal Atomic # 7 Polarization: -65.25 SS G_CDS: -0.21 Total: -65.46 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: -0.23 Total: -8.46 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.87 -9.57 -44.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331134298.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.830 kcal (2) G-P(sol) polarization free energy of solvation -34.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds