Wall clock time and date at job start Tue Mar 31 2020 03:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00262 * 2 1 4 4 H 1.48500 * 109.47027 * 270.00123 * 3 2 1 5 5 H 1.48497 * 109.47153 * 29.99916 * 3 2 1 6 6 H 1.48498 * 109.47338 * 150.00472 * 3 2 1 7 7 C 1.37879 * 119.99612 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99777 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00143 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.47092 * 180.02562 * 9 7 2 11 11 C 1.30094 * 119.99810 * 115.44281 * 10 9 7 12 12 O 1.35105 * 120.00025 * 185.30993 * 11 10 9 13 13 N 1.37346 * 120.00211 * 5.30391 * 11 10 9 14 14 C 1.46924 * 120.63125 * 265.13668 * 13 11 10 15 15 C 1.53194 * 108.77428 * 233.63216 * 14 13 11 16 16 C 1.53039 * 109.30981 * 305.36609 * 15 14 13 17 17 C 1.53001 * 109.46026 * 181.39042 * 16 15 14 18 18 N 1.46497 * 109.47527 * 175.00278 * 17 16 15 19 19 C 1.34428 * 126.82966 * 124.99634 * 18 17 16 20 20 N 1.30829 * 108.07991 * 179.97438 * 19 18 17 21 21 C 1.33237 * 109.83145 * 0.02562 * 20 19 18 22 22 N 1.30714 * 108.94547 * 0.25978 * 21 20 19 23 23 C 1.53042 * 109.54085 * 61.36640 * 16 15 14 24 24 C 1.46925 * 120.62654 * 85.16105 * 13 11 10 25 25 H 0.97001 * 119.99888 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.47244 * 60.00139 * 9 7 2 27 27 H 1.09001 * 109.47404 * 299.99776 * 9 7 2 28 28 H 0.96696 * 113.99371 * 359.97438 * 12 11 10 29 29 H 1.09001 * 109.58408 * 113.84456 * 14 13 11 30 30 H 1.08993 * 109.58677 * 353.41604 * 14 13 11 31 31 H 1.08997 * 109.49594 * 185.41573 * 15 14 13 32 32 H 1.09001 * 109.49903 * 65.31470 * 15 14 13 33 33 H 1.09000 * 109.46543 * 301.35707 * 16 15 14 34 34 H 1.08997 * 109.47736 * 54.99545 * 17 16 15 35 35 H 1.09003 * 109.46805 * 294.99808 * 17 16 15 36 36 H 1.08004 * 125.95959 * 359.97438 * 19 18 17 37 37 H 1.07995 * 125.52955 * 179.97438 * 21 20 19 38 38 H 1.09003 * 109.49076 * 58.58534 * 23 16 15 39 39 H 1.09001 * 109.49817 * 178.68226 * 23 16 15 40 40 H 1.08997 * 109.58829 * 246.15488 * 24 13 11 41 41 H 1.08999 * 109.59055 * 6.58275 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.6999 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 2.2576 -4.4216 1.0169 12 8 3.2062 -5.3824 1.0657 13 7 1.3512 -4.2989 2.0414 14 6 1.6796 -3.5180 3.2419 15 6 1.4553 -4.3955 4.4774 16 6 0.0268 -4.9443 4.4558 17 6 -0.2120 -5.7932 5.7061 18 7 -1.6129 -6.2202 5.7463 19 6 -2.0685 -7.4811 5.8438 20 7 -3.3761 -7.4411 5.8488 21 6 -3.7901 -6.1781 5.7559 22 7 -2.7468 -5.3937 5.6846 23 6 -0.1710 -5.8078 3.2078 24 6 0.0350 -4.9463 1.9579 25 1 -0.4850 0.8401 0.0004 26 1 0.6239 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8897 28 1 3.7972 -5.3908 0.3004 29 1 1.0349 -2.6407 3.2948 30 1 2.7229 -3.2054 3.2004 31 1 1.6026 -3.7999 5.3783 32 1 2.1635 -5.2241 4.4687 33 1 -0.6806 -4.1153 4.4393 34 1 0.0136 -5.2034 6.5944 35 1 0.4344 -6.6704 5.6786 36 1 -1.4610 -8.3719 5.9070 37 1 -4.8204 -5.8551 5.7374 38 1 0.5526 -6.6230 3.2111 39 1 -1.1811 -6.2173 3.2051 40 1 -0.7439 -4.1856 1.9062 41 1 -0.0069 -5.5761 1.0692 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331134298.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:38 Heat of formation + Delta-G solvation = 57.534647 kcal Electronic energy + Delta-G solvation = -23742.758576 eV Core-core repulsion = 20273.538434 eV Total energy + Delta-G solvation = -3469.220142 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.93324 -40.61354 -38.75305 -36.48183 -35.42101 -34.16319 -32.53193 -32.11096 -32.05024 -29.31498 -27.99937 -25.30174 -24.36794 -24.18930 -22.88606 -22.54720 -21.65538 -20.34342 -18.66337 -18.31035 -18.12705 -17.61189 -16.78044 -16.45571 -16.29735 -15.86755 -15.47744 -15.39290 -14.99926 -14.87408 -14.62357 -14.35603 -14.17683 -14.05148 -13.77526 -13.36888 -13.19100 -12.85982 -12.81184 -12.69677 -12.20842 -12.20429 -12.03171 -11.76667 -11.63294 -11.48856 -10.91064 -10.84197 -10.72644 -10.50367 -10.28531 -9.84629 -9.03400 -8.23893 -6.36452 0.79120 1.35149 1.38533 1.46466 1.52132 1.53537 1.90940 2.08039 2.38309 3.07056 3.36200 3.44552 3.58684 3.69889 3.78554 3.97199 4.16288 4.21028 4.24693 4.35473 4.44309 4.53175 4.58744 4.70738 4.71986 4.82783 4.95832 4.98492 5.06988 5.10851 5.22634 5.33317 5.37644 5.43140 5.53947 5.65063 6.02538 6.08474 6.27676 6.35578 6.66315 6.83150 7.19935 7.27989 7.51951 8.85580 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.018538 B = 0.003825 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.040375 B = 7318.793524 C = 8053.134877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.007 3.993 3 Si 0.971 3.029 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.528 4.528 8 H 0.051 0.949 9 C 0.217 3.783 10 N -0.606 5.606 11 C 0.547 3.453 12 O -0.487 6.487 13 N -0.667 5.667 14 C 0.147 3.853 15 C -0.110 4.110 16 C -0.089 4.089 17 C 0.136 3.864 18 N -0.376 5.376 19 C 0.258 3.742 20 N -0.581 5.581 21 C 0.186 3.814 22 N -0.353 5.353 23 C -0.107 4.107 24 C 0.151 3.849 25 H 0.266 0.734 26 H -0.010 1.010 27 H 0.005 0.995 28 H 0.420 0.580 29 H 0.030 0.970 30 H 0.064 0.936 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.055 0.945 34 H 0.101 0.899 35 H 0.142 0.858 36 H 0.260 0.740 37 H 0.231 0.769 38 H 0.086 0.914 39 H 0.058 0.942 40 H 0.027 0.973 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.222 -16.076 15.021 22.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.191 4.191 3 Si 0.795 3.205 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.190 1.190 7 C -0.567 4.567 8 H 0.069 0.931 9 C 0.089 3.911 10 N -0.344 5.344 11 C 0.233 3.767 12 O -0.282 6.282 13 N -0.407 5.407 14 C 0.023 3.977 15 C -0.149 4.149 16 C -0.109 4.109 17 C 0.015 3.985 18 N -0.166 5.166 19 C -0.038 4.038 20 N -0.309 5.309 21 C -0.117 4.117 22 N -0.182 5.182 23 C -0.146 4.146 24 C 0.028 3.972 25 H 0.075 0.925 26 H 0.008 0.992 27 H 0.023 0.977 28 H 0.278 0.722 29 H 0.048 0.952 30 H 0.083 0.917 31 H 0.112 0.888 32 H 0.107 0.893 33 H 0.073 0.927 34 H 0.119 0.881 35 H 0.159 0.841 36 H 0.276 0.724 37 H 0.247 0.753 38 H 0.105 0.895 39 H 0.076 0.924 40 H 0.045 0.955 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.112 -15.490 14.691 21.377 hybrid contribution -0.120 1.216 -0.484 1.315 sum 0.992 -14.273 14.207 20.163 Atomic orbital electron populations 1.70084 1.07632 1.28003 1.51166 1.25885 0.95791 1.02984 0.94485 0.85363 0.78503 0.78070 0.78558 1.19799 1.20203 1.18978 1.21354 0.93083 0.91116 1.51118 0.93106 1.19077 0.90211 0.87315 0.94529 1.72190 1.28854 1.08288 1.25061 1.19994 0.85504 0.86582 0.84616 1.84700 1.42849 1.51025 1.49626 1.46068 1.13027 1.60888 1.20762 1.21248 0.99607 0.92659 0.84164 1.21858 0.95415 1.00354 0.97298 1.21268 0.97821 0.97906 0.93886 1.22166 0.75039 1.02351 0.98921 1.50685 1.07430 1.05404 1.53090 1.26882 0.91485 0.90585 0.94803 1.70532 1.11130 1.22811 1.26453 1.26427 1.00445 0.86799 0.98015 1.78046 0.93463 1.20086 1.26582 1.21810 1.01379 0.97936 0.93432 1.21161 0.83017 0.94472 0.98589 0.92532 0.99196 0.97721 0.72234 0.95199 0.91707 0.88836 0.89273 0.92669 0.88053 0.84062 0.72448 0.75281 0.89544 0.92385 0.95472 0.92029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.96 13.29 21.45 0.28 -56.68 16 2 C 0.01 0.41 5.46 84.66 0.46 0.88 16 3 Si 0.97 45.16 29.54 68.60 2.03 47.18 16 4 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.53 -31.55 9.39 25.60 0.24 -31.31 16 8 H 0.05 3.03 7.81 -2.91 -0.02 3.00 16 9 C 0.22 12.31 6.07 85.63 0.52 12.83 16 10 N -0.61 -28.96 10.48 -469.70 -4.92 -33.88 16 11 C 0.55 21.23 7.33 179.63 1.32 22.55 16 12 O -0.49 -14.73 13.62 -83.81 -1.14 -15.87 16 13 N -0.67 -23.56 1.55 -819.20 -1.27 -24.83 16 14 C 0.15 4.68 6.31 86.36 0.54 5.23 16 15 C -0.11 -2.18 5.36 30.67 0.16 -2.02 16 16 C -0.09 -1.79 2.25 -10.77 -0.02 -1.82 16 17 C 0.14 1.72 5.94 86.38 0.51 2.23 16 18 N -0.38 -6.77 3.12 -352.07 -1.10 -7.87 16 19 C 0.26 3.93 12.63 180.36 2.28 6.20 16 20 N -0.58 -12.48 11.19 -204.01 -2.28 -14.76 16 21 C 0.19 4.13 13.03 180.77 2.36 6.48 16 22 N -0.35 -8.80 12.52 -61.25 -0.77 -9.57 16 23 C -0.11 -2.39 5.26 30.67 0.16 -2.23 16 24 C 0.15 4.89 6.12 86.36 0.53 5.42 16 25 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 26 H -0.01 -0.62 8.14 -2.38 -0.02 -0.64 16 27 H 0.00 0.29 6.07 -2.39 -0.01 0.27 16 28 H 0.42 9.89 8.97 -74.06 -0.66 9.23 16 29 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.06 2.13 7.93 -2.39 -0.02 2.11 16 31 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.05 1.52 8.09 -2.39 -0.02 1.50 16 34 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.14 0.69 8.09 -2.39 -0.02 0.67 16 36 H 0.26 1.13 8.06 -2.91 -0.02 1.11 16 37 H 0.23 3.74 8.06 -2.91 -0.02 3.72 16 38 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.06 1.36 7.72 -2.39 -0.02 1.34 16 40 H 0.03 1.04 8.07 -2.39 -0.02 1.02 16 41 H 0.06 2.01 7.93 -2.39 -0.02 1.99 16 Total: -1.00 -80.00 345.71 0.27 -79.74 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: 0.37 Total: 12.09 kcal Atomic # 6 Polarization: 15.39 SS G_CDS: 9.06 Total: 24.45 kcal Atomic # 7 Polarization: -137.53 SS G_CDS: -10.05 Total: -147.58 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -1.14 Total: -15.87 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Total: -80.00 0.27 -79.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331134298.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.270 kcal (2) G-P(sol) polarization free energy of solvation -80.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds