Wall clock time and date at job start Tue Mar 31 2020 03:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99759 * 2 1 4 4 H 1.48502 * 109.47120 * 269.99509 * 3 2 1 5 5 H 1.48496 * 109.47357 * 29.99911 * 3 2 1 6 6 H 1.48497 * 109.47224 * 150.00146 * 3 2 1 7 7 C 1.37873 * 120.00424 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99899 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00480 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.47431 * 180.02562 * 9 7 2 11 11 N 1.46892 * 109.47265 * 179.97438 * 10 9 7 12 12 C 1.46848 * 110.99938 * 314.20698 * 11 10 9 13 13 C 1.53048 * 109.57298 * 174.18963 * 12 11 10 14 14 C 1.53120 * 109.27450 * 59.08726 * 13 12 11 15 15 C 1.53123 * 109.21163 * 302.43753 * 14 13 12 16 16 H 1.09001 * 109.49925 * 297.68290 * 15 14 13 17 17 N 1.46491 * 109.50307 * 177.56228 * 15 14 13 18 18 C 1.34584 * 125.75176 * 324.71714 * 17 15 14 19 19 N 1.30867 * 107.62712 * 179.86358 * 18 17 15 20 20 C 1.34547 * 107.27198 * 0.39099 * 19 18 17 21 21 C 1.47868 * 126.05492 * 179.78597 * 20 19 18 22 22 N 1.34782 * 119.99738 * 359.95784 * 21 20 19 23 23 O 1.21550 * 120.00529 * 179.97438 * 21 20 19 24 24 N 1.28849 * 125.74747 * 145.02373 * 17 15 14 25 25 C 1.46842 * 111.00192 * 189.99769 * 11 10 9 26 26 H 0.97000 * 120.00002 * 0.02562 * 1 2 3 27 27 H 1.08994 * 109.47009 * 59.99815 * 9 7 2 28 28 H 1.09000 * 109.46639 * 300.00062 * 9 7 2 29 29 H 1.08997 * 109.46851 * 59.99494 * 10 9 7 30 30 H 1.09003 * 109.46671 * 299.99942 * 10 9 7 31 31 H 1.08999 * 109.46555 * 294.17605 * 12 11 10 32 32 H 1.09000 * 109.46248 * 54.14574 * 12 11 10 33 33 H 1.09000 * 109.45669 * 299.17222 * 13 12 11 34 34 H 1.09003 * 109.55501 * 179.05467 * 13 12 11 35 35 H 1.09002 * 109.52427 * 182.50027 * 14 13 12 36 36 H 1.08995 * 109.52208 * 62.37346 * 14 13 12 37 37 H 1.07998 * 126.18389 * 359.97438 * 18 17 15 38 38 H 0.96999 * 119.99786 * 359.97438 * 22 21 20 39 39 H 0.96999 * 120.00161 * 179.97438 * 22 21 20 40 40 H 1.09001 * 109.46203 * 65.82095 * 25 11 10 41 41 H 1.09006 * 109.45199 * 305.85056 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0010 11 7 5.4906 -2.6365 0.0009 12 6 6.0168 -1.6805 -0.9817 13 6 7.5399 -1.6005 -0.8546 14 6 8.1404 -2.9890 -1.0913 15 6 7.5398 -3.9758 -0.0863 16 1 7.8031 -3.6695 0.9262 17 7 8.0663 -5.3182 -0.3445 18 6 8.3549 -5.8302 -1.5552 19 7 8.8025 -7.0466 -1.3747 20 6 8.7815 -7.2876 -0.0511 21 6 9.1977 -8.5422 0.6117 22 7 9.6483 -9.5765 -0.1257 23 8 9.1333 -8.6408 1.8215 24 7 8.3260 -6.2097 0.5488 25 6 6.0169 -3.9865 -0.2372 26 1 -0.4850 0.8400 -0.0004 27 1 3.8746 -0.6799 0.8911 28 1 3.8752 -0.6803 -0.8889 29 1 3.6586 -3.1501 -0.8892 30 1 3.6580 -3.1505 0.8908 31 1 5.7540 -2.0109 -1.9867 32 1 5.5850 -0.6966 -0.7985 33 1 7.8031 -1.2558 0.1454 34 1 7.9318 -0.9035 -1.5953 35 1 9.2214 -2.9459 -0.9580 36 1 7.9113 -3.3169 -2.1052 37 1 8.2397 -5.3274 -2.5041 38 1 9.6992 -9.4980 -1.0911 39 1 9.9217 -10.3994 0.3091 40 1 5.7541 -4.3061 -1.2456 41 1 5.5851 -4.6774 0.4870 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331158006.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:01 Heat of formation + Delta-G solvation = 55.219254 kcal Electronic energy + Delta-G solvation = -23186.872712 eV Core-core repulsion = 19717.552167 eV Total energy + Delta-G solvation = -3469.320545 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.74150 -39.55548 -39.09534 -35.48141 -34.13423 -33.37166 -32.62122 -31.85880 -30.43998 -29.26942 -25.67549 -25.16536 -24.00239 -22.97819 -22.35427 -20.85174 -20.31019 -19.60046 -18.40585 -17.42953 -16.98474 -16.78042 -16.59048 -15.52132 -15.36991 -14.99383 -14.86004 -14.49740 -14.24034 -14.18325 -13.75170 -13.57858 -13.16120 -12.76291 -12.60122 -12.41149 -11.89689 -11.57403 -11.24770 -11.02901 -10.97212 -10.89965 -10.71388 -10.65339 -10.50219 -10.10271 -10.05547 -10.00941 -9.92570 -9.69251 -9.26570 -8.61620 -8.13004 -6.12205 -4.11544 1.18004 1.79716 1.87941 3.02029 3.14258 3.23556 3.32638 3.35110 3.87056 3.97686 4.10366 4.37403 4.38287 4.46879 4.59523 4.67092 4.92851 4.96438 5.20186 5.22629 5.39779 5.45818 5.49374 5.61062 5.63766 5.72870 5.95582 6.01968 6.06063 6.14606 6.17847 6.24851 6.41946 6.56554 6.93080 6.94050 7.12158 7.30698 7.40919 7.72134 7.74442 7.96541 8.43554 8.91374 9.49054 11.01080 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.030141 B = 0.002950 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.758743 B = 9488.623465 C =10013.938798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.524 4.524 8 H 0.071 0.929 9 C -0.013 4.013 10 C 0.072 3.928 11 N -0.535 5.535 12 C 0.041 3.959 13 C -0.112 4.112 14 C -0.128 4.128 15 C 0.148 3.852 16 H 0.124 0.876 17 N -0.286 5.286 18 C 0.194 3.806 19 N -0.489 5.489 20 C 0.125 3.875 21 C 0.625 3.375 22 N -0.834 5.834 23 O -0.521 6.521 24 N -0.241 5.241 25 C 0.049 3.951 26 H 0.264 0.736 27 H 0.027 0.973 28 H 0.015 0.985 29 H 0.030 0.970 30 H 0.073 0.927 31 H 0.035 0.965 32 H 0.096 0.904 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.223 0.777 38 H 0.411 0.589 39 H 0.410 0.590 40 H 0.040 0.960 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.277 -10.660 -6.466 24.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.133 4.133 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.188 1.188 7 C -0.563 4.563 8 H 0.089 0.911 9 C -0.050 4.050 10 C -0.054 4.054 11 N -0.261 5.261 12 C -0.087 4.087 13 C -0.151 4.151 14 C -0.166 4.166 15 C 0.047 3.953 16 H 0.142 0.858 17 N -0.082 5.082 18 C -0.101 4.101 19 N -0.215 5.215 20 C -0.154 4.154 21 C 0.405 3.595 22 N -0.400 5.400 23 O -0.393 6.393 24 N -0.081 5.081 25 C -0.080 4.080 26 H 0.074 0.926 27 H 0.045 0.955 28 H 0.033 0.967 29 H 0.048 0.952 30 H 0.091 0.909 31 H 0.054 0.946 32 H 0.115 0.885 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.240 0.760 38 H 0.241 0.759 39 H 0.242 0.758 40 H 0.058 0.942 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 21.194 -10.484 -4.731 24.114 hybrid contribution -0.006 0.566 -1.431 1.539 sum 21.188 -9.918 -6.162 24.192 Atomic orbital electron populations 1.69909 1.06335 1.27022 1.50701 1.25003 0.94729 0.99181 0.94413 0.86781 0.80540 0.83574 0.78450 1.20331 1.21295 1.18760 1.21033 0.89210 0.94608 1.51409 0.91054 1.19719 0.97031 0.91422 0.96844 1.22163 0.82167 1.00752 1.00304 1.62005 1.10633 1.04097 1.49332 1.22337 0.93909 0.98832 0.93640 1.21593 0.95518 0.94523 1.03417 1.22007 1.00813 0.95547 0.98255 1.21874 0.95005 0.74832 1.03607 0.85833 1.47710 1.42752 1.13169 1.04519 1.26347 0.99656 0.91102 0.93043 1.71221 1.20702 1.14126 1.15408 1.23594 1.07511 0.96183 0.88101 1.16247 0.76698 0.81032 0.85488 1.43430 1.68117 1.16355 1.12058 1.90890 1.53607 1.81670 1.13143 1.74371 1.15581 0.98736 1.19370 1.22330 0.91363 0.93391 1.00957 0.92614 0.95503 0.96710 0.95217 0.90887 0.94632 0.88538 0.90343 0.90256 0.90506 0.90823 0.76026 0.75907 0.75802 0.94175 0.89733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.24 13.96 55.43 0.77 -26.47 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 20.87 27.47 -169.99 -4.67 16.20 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.26 -5.94 6.54 56.52 0.37 -5.57 16 7 C -0.52 -14.41 9.66 -34.44 -0.33 -14.74 16 8 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 9 C -0.01 -0.28 3.29 -27.88 -0.09 -0.37 16 10 C 0.07 1.35 5.21 -3.83 -0.02 1.33 16 11 N -0.54 -7.97 4.81 -234.67 -1.13 -9.10 16 12 C 0.04 0.53 4.85 -3.83 -0.02 0.51 16 13 C -0.11 -1.03 6.10 -26.64 -0.16 -1.19 16 14 C -0.13 -0.99 4.97 -26.61 -0.13 -1.12 16 15 C 0.15 1.53 3.28 -67.85 -0.22 1.30 16 16 H 0.12 1.38 8.14 -51.93 -0.42 0.96 16 17 N -0.29 -3.21 3.24 -55.99 -0.18 -3.39 16 18 C 0.19 1.82 11.71 -90.48 -1.06 0.77 16 19 N -0.49 -5.40 11.09 -12.37 -0.14 -5.54 16 20 C 0.13 1.65 7.96 -156.35 -1.24 0.40 16 21 C 0.63 7.83 8.10 -12.32 -0.10 7.73 16 22 N -0.83 -6.25 8.87 30.54 0.27 -5.98 16 23 O -0.52 -8.45 17.92 5.32 0.10 -8.35 16 24 N -0.24 -3.43 12.08 32.07 0.39 -3.04 16 25 C 0.05 0.61 5.03 -3.84 -0.02 0.60 16 26 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 27 H 0.03 0.62 7.20 -51.93 -0.37 0.24 16 28 H 0.01 0.32 5.63 -51.93 -0.29 0.03 16 29 H 0.03 0.56 8.08 -51.93 -0.42 0.14 16 30 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.10 1.44 5.81 -51.93 -0.30 1.14 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.46 7.02 -51.93 -0.36 0.10 16 37 H 0.22 1.16 7.18 -52.49 -0.38 0.79 16 38 H 0.41 2.35 8.54 -40.82 -0.35 2.01 16 39 H 0.41 2.18 8.93 -40.82 -0.36 1.81 16 40 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.08 1.17 8.12 -51.93 -0.42 0.74 16 LS Contribution 335.63 15.07 5.06 5.06 Total: -1.00 -34.30 335.63 -8.84 -43.14 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -5.81 Total: 0.43 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -3.50 Total: -2.96 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: -0.01 Total: -53.52 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: 0.10 Total: -8.35 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.67 Total: 16.20 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.30 -8.84 -43.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331158006.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.356 kcal (2) G-P(sol) polarization free energy of solvation -34.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds