Wall clock time and date at job start Tue Mar 31 2020 03:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99759 * 2 1 4 4 H 1.48502 * 109.47120 * 269.99509 * 3 2 1 5 5 H 1.48496 * 109.47357 * 29.99911 * 3 2 1 6 6 H 1.48497 * 109.47224 * 150.00146 * 3 2 1 7 7 C 1.37873 * 120.00424 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99899 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00480 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.47431 * 180.02562 * 9 7 2 11 11 N 1.46892 * 109.47265 * 179.97438 * 10 9 7 12 12 C 1.46848 * 110.99938 * 314.20698 * 11 10 9 13 13 C 1.53048 * 109.57298 * 174.18963 * 12 11 10 14 14 C 1.53120 * 109.27450 * 59.08726 * 13 12 11 15 15 C 1.53123 * 109.21163 * 302.43753 * 14 13 12 16 16 H 1.09001 * 109.49925 * 297.68290 * 15 14 13 17 17 N 1.46491 * 109.50307 * 177.56228 * 15 14 13 18 18 C 1.34584 * 125.75176 * 324.71714 * 17 15 14 19 19 N 1.30867 * 107.62712 * 179.86358 * 18 17 15 20 20 C 1.34547 * 107.27198 * 0.39099 * 19 18 17 21 21 C 1.47868 * 126.05492 * 179.78597 * 20 19 18 22 22 N 1.34782 * 119.99738 * 359.95784 * 21 20 19 23 23 O 1.21550 * 120.00529 * 179.97438 * 21 20 19 24 24 N 1.28849 * 125.74747 * 145.02373 * 17 15 14 25 25 C 1.46842 * 111.00192 * 189.99769 * 11 10 9 26 26 H 0.97000 * 120.00002 * 0.02562 * 1 2 3 27 27 H 1.08994 * 109.47009 * 59.99815 * 9 7 2 28 28 H 1.09000 * 109.46639 * 300.00062 * 9 7 2 29 29 H 1.08997 * 109.46851 * 59.99494 * 10 9 7 30 30 H 1.09003 * 109.46671 * 299.99942 * 10 9 7 31 31 H 1.08999 * 109.46555 * 294.17605 * 12 11 10 32 32 H 1.09000 * 109.46248 * 54.14574 * 12 11 10 33 33 H 1.09000 * 109.45669 * 299.17222 * 13 12 11 34 34 H 1.09003 * 109.55501 * 179.05467 * 13 12 11 35 35 H 1.09002 * 109.52427 * 182.50027 * 14 13 12 36 36 H 1.08995 * 109.52208 * 62.37346 * 14 13 12 37 37 H 1.07998 * 126.18389 * 359.97438 * 18 17 15 38 38 H 0.96999 * 119.99786 * 359.97438 * 22 21 20 39 39 H 0.96999 * 120.00161 * 179.97438 * 22 21 20 40 40 H 1.09001 * 109.46203 * 65.82095 * 25 11 10 41 41 H 1.09006 * 109.45199 * 305.85056 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0010 11 7 5.4906 -2.6365 0.0009 12 6 6.0168 -1.6805 -0.9817 13 6 7.5399 -1.6005 -0.8546 14 6 8.1404 -2.9890 -1.0913 15 6 7.5398 -3.9758 -0.0863 16 1 7.8031 -3.6695 0.9262 17 7 8.0663 -5.3182 -0.3445 18 6 8.3549 -5.8302 -1.5552 19 7 8.8025 -7.0466 -1.3747 20 6 8.7815 -7.2876 -0.0511 21 6 9.1977 -8.5422 0.6117 22 7 9.6483 -9.5765 -0.1257 23 8 9.1333 -8.6408 1.8215 24 7 8.3260 -6.2097 0.5488 25 6 6.0169 -3.9865 -0.2372 26 1 -0.4850 0.8400 -0.0004 27 1 3.8746 -0.6799 0.8911 28 1 3.8752 -0.6803 -0.8889 29 1 3.6586 -3.1501 -0.8892 30 1 3.6580 -3.1505 0.8908 31 1 5.7540 -2.0109 -1.9867 32 1 5.5850 -0.6966 -0.7985 33 1 7.8031 -1.2558 0.1454 34 1 7.9318 -0.9035 -1.5953 35 1 9.2214 -2.9459 -0.9580 36 1 7.9113 -3.3169 -2.1052 37 1 8.2397 -5.3274 -2.5041 38 1 9.6992 -9.4980 -1.0911 39 1 9.9217 -10.3994 0.3091 40 1 5.7541 -4.3061 -1.2456 41 1 5.5851 -4.6774 0.4870 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331158006.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:59 Heat of formation + Delta-G solvation = 28.083239 kcal Electronic energy + Delta-G solvation = -23188.049418 eV Core-core repulsion = 19717.552167 eV Total energy + Delta-G solvation = -3470.497251 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -44.59454 -40.52267 -40.10430 -36.65199 -35.20556 -34.70176 -33.93656 -32.75487 -31.90838 -30.39869 -27.12602 -26.11152 -25.04027 -24.08407 -23.45835 -21.73651 -21.60240 -20.63099 -19.25632 -19.07128 -18.13425 -17.68774 -17.50948 -16.66569 -16.40491 -16.18159 -15.94164 -15.75118 -15.48117 -15.12309 -14.85960 -14.79065 -14.49993 -14.36735 -13.59975 -13.35685 -13.28150 -12.92476 -12.66258 -12.13659 -11.97872 -11.86205 -11.80134 -11.78452 -11.66037 -11.65911 -11.55830 -11.30777 -11.19981 -10.88396 -10.75194 -10.60702 -9.33163 -8.30212 -6.35647 0.25615 0.99925 1.07379 1.36424 1.40532 1.52082 2.20202 2.22362 2.36564 2.92609 3.05476 3.10105 3.33824 3.52888 3.75498 3.83096 3.90840 4.09173 4.12170 4.35555 4.39643 4.45622 4.55197 4.63332 4.72536 4.83628 4.85878 4.87422 5.01947 5.10709 5.21867 5.25635 5.37279 5.45708 5.50854 5.62049 5.73350 6.00700 6.11115 6.19503 6.28431 6.72713 6.93552 7.15539 7.29243 8.86652 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.030141 B = 0.002950 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.758743 B = 9488.623465 C =10013.938798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.004 3.996 3 Si 0.953 3.047 4 H -0.261 1.261 5 H -0.288 1.288 6 H -0.242 1.242 7 C -0.536 4.536 8 H 0.028 0.972 9 C -0.003 4.003 10 C 0.084 3.916 11 N -0.541 5.541 12 C 0.034 3.966 13 C -0.103 4.103 14 C -0.119 4.119 15 C 0.155 3.845 16 H 0.111 0.889 17 N -0.289 5.289 18 C 0.207 3.793 19 N -0.492 5.492 20 C 0.114 3.886 21 C 0.619 3.381 22 N -0.805 5.805 23 O -0.569 6.569 24 N -0.284 5.284 25 C 0.053 3.947 26 H 0.267 0.733 27 H 0.024 0.976 28 H 0.032 0.968 29 H 0.023 0.977 30 H 0.054 0.946 31 H 0.043 0.957 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.107 0.893 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.269 0.731 38 H 0.423 0.577 39 H 0.422 0.578 40 H 0.051 0.949 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.421 -9.676 -8.692 27.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.193 4.193 3 Si 0.776 3.224 4 H -0.186 1.186 5 H -0.214 1.214 6 H -0.165 1.165 7 C -0.575 4.575 8 H 0.046 0.954 9 C -0.041 4.041 10 C -0.043 4.043 11 N -0.266 5.266 12 C -0.093 4.093 13 C -0.142 4.142 14 C -0.157 4.157 15 C 0.054 3.946 16 H 0.129 0.871 17 N -0.084 5.084 18 C -0.087 4.087 19 N -0.218 5.218 20 C -0.166 4.166 21 C 0.400 3.600 22 N -0.371 5.371 23 O -0.445 6.445 24 N -0.124 5.124 25 C -0.076 4.076 26 H 0.075 0.925 27 H 0.042 0.958 28 H 0.050 0.950 29 H 0.041 0.959 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.125 0.875 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.284 0.716 38 H 0.255 0.745 39 H 0.256 0.744 40 H 0.070 0.930 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 24.380 -9.544 -7.002 27.102 hybrid contribution -1.047 0.144 -0.792 1.321 sum 23.333 -9.400 -7.793 26.335 Atomic orbital electron populations 1.70077 1.08501 1.28281 1.52448 1.26046 0.95612 1.03742 0.93905 0.85613 0.79608 0.77738 0.79451 1.18563 1.21402 1.16543 1.21414 0.92107 0.93090 1.50855 0.95390 1.19579 0.93411 0.93879 0.97220 1.21801 0.85152 0.98156 0.99230 1.61896 1.07826 1.05968 1.50890 1.22454 0.96594 0.96980 0.93279 1.21555 0.92411 0.96046 1.04154 1.22027 1.01625 0.93530 0.98518 1.21800 0.93243 0.75238 1.04274 0.87107 1.47707 1.42912 1.12972 1.04763 1.27264 0.97283 0.90470 0.93724 1.71237 1.21321 1.15098 1.14143 1.23757 1.07649 0.96170 0.88983 1.16429 0.76679 0.81790 0.85110 1.43238 1.65815 1.15545 1.12465 1.90859 1.56046 1.82568 1.15074 1.74321 1.17052 0.99802 1.21197 1.22265 0.93062 0.91497 1.00811 0.92459 0.95809 0.94974 0.95857 0.92717 0.93837 0.90482 0.90891 0.87451 0.88458 0.88253 0.71583 0.74502 0.74352 0.93048 0.92021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.34 13.96 21.45 0.30 -59.04 16 2 C 0.00 0.21 5.47 84.65 0.46 0.68 16 3 Si 0.95 42.65 27.47 68.60 1.88 44.54 16 4 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 5 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.24 -9.93 6.54 99.48 0.65 -9.28 16 7 C -0.54 -30.38 9.66 25.60 0.25 -30.13 16 8 H 0.03 1.76 7.99 -2.91 -0.02 1.74 16 9 C 0.00 -0.15 3.29 29.85 0.10 -0.05 16 10 C 0.08 3.18 5.21 86.31 0.45 3.63 16 11 N -0.54 -15.51 4.81 -896.35 -4.31 -19.82 16 12 C 0.03 0.79 4.85 86.33 0.42 1.21 16 13 C -0.10 -1.47 6.10 30.65 0.19 -1.29 16 14 C -0.12 -1.30 4.97 30.68 0.15 -1.15 16 15 C 0.16 2.86 3.28 45.05 0.15 3.00 16 16 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 17 N -0.29 -5.88 3.24 -331.05 -1.07 -6.95 16 18 C 0.21 3.17 11.71 180.30 2.11 5.28 16 19 N -0.49 -9.68 11.09 -193.03 -2.14 -11.82 16 20 C 0.11 2.89 7.96 137.13 1.09 3.98 16 21 C 0.62 15.35 8.10 86.79 0.70 16.06 16 22 N -0.80 -10.99 8.87 -175.58 -1.56 -12.55 16 23 O -0.57 -18.93 17.92 -3.87 -0.07 -19.00 16 24 N -0.28 -7.93 12.08 -52.44 -0.63 -8.56 16 25 C 0.05 1.26 5.03 86.33 0.43 1.70 16 26 H 0.27 15.46 8.31 -92.71 -0.77 14.68 16 27 H 0.02 1.07 7.20 -2.39 -0.02 1.05 16 28 H 0.03 1.33 5.63 -2.39 -0.01 1.32 16 29 H 0.02 0.89 8.08 -2.39 -0.02 0.87 16 30 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.08 2.09 5.81 -2.39 -0.01 2.08 16 33 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.10 0.64 7.02 -2.39 -0.02 0.62 16 37 H 0.27 1.25 7.18 -2.91 -0.02 1.23 16 38 H 0.42 3.98 8.54 -92.71 -0.79 3.19 16 39 H 0.42 3.90 8.93 -92.71 -0.83 3.07 16 40 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.06 1.74 8.12 -2.38 -0.02 1.72 16 Total: -1.00 -79.23 335.63 -1.70 -80.93 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -0.61 Total: 9.36 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: 6.50 Total: 2.92 kcal Atomic # 7 Polarization: -109.33 SS G_CDS: -9.41 Total: -118.74 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.07 Total: -19.00 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 1.88 Total: 44.54 kcal Total: -79.23 -1.70 -80.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331158006.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.015 kcal (2) G-P(sol) polarization free energy of solvation -79.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds