Wall clock time and date at job start Tue Mar 31 2020 03:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99823 * 2 1 4 4 H 1.48500 * 109.47303 * 240.00253 * 3 2 1 5 5 H 1.48498 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47211 * 120.00346 * 3 2 1 7 7 C 1.37883 * 120.00628 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00704 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99594 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47111 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.47139 * 180.02562 * 10 9 7 12 12 C 1.46856 * 110.99619 * 293.95452 * 11 10 9 13 13 C 1.53039 * 109.51787 * 185.84053 * 12 11 10 14 14 C 1.53123 * 109.31189 * 300.79882 * 13 12 11 15 15 C 1.53203 * 109.11533 * 57.63615 * 14 13 12 16 16 H 1.09007 * 109.52297 * 62.34418 * 15 14 13 17 17 N 1.46504 * 109.48949 * 182.41992 * 15 14 13 18 18 C 1.34583 * 125.74604 * 34.54861 * 17 15 14 19 19 N 1.30873 * 107.61974 * 179.86087 * 18 17 15 20 20 C 1.34543 * 107.27217 * 0.38770 * 19 18 17 21 21 C 1.47876 * 126.05072 * 179.73425 * 20 19 18 22 22 N 1.34772 * 119.99790 * 0.02562 * 21 20 19 23 23 O 1.21550 * 120.00016 * 180.02562 * 21 20 19 24 24 N 1.28854 * 125.74503 * 214.84559 * 17 15 14 25 25 C 1.46846 * 111.00121 * 58.16335 * 11 10 9 26 26 H 0.96992 * 120.00288 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.46979 * 59.99792 * 9 7 2 28 28 H 1.09002 * 109.47115 * 300.00084 * 9 7 2 29 29 H 1.09000 * 109.46927 * 60.00064 * 10 9 7 30 30 H 1.09002 * 109.47148 * 300.00001 * 10 9 7 31 31 H 1.09000 * 109.46462 * 65.82793 * 12 11 10 32 32 H 1.09002 * 109.45930 * 305.85061 * 12 11 10 33 33 H 1.09002 * 109.50563 * 60.76214 * 13 12 11 34 34 H 1.09003 * 109.50107 * 180.84195 * 13 12 11 35 35 H 1.08994 * 109.52349 * 177.58253 * 14 13 12 36 36 H 1.08997 * 109.52263 * 297.77214 * 14 13 12 37 37 H 1.07997 * 126.19103 * 0.02562 * 18 17 15 38 38 H 0.97004 * 120.00433 * 0.02562 * 22 21 20 39 39 H 0.97000 * 120.00087 * 180.02562 * 22 21 20 40 40 H 1.09004 * 109.46012 * 294.17710 * 25 11 10 41 41 H 1.08997 * 109.46257 * 54.15030 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 7 1.5110 -4.9343 -0.0012 12 6 0.7654 -5.1121 1.2515 13 6 0.1331 -6.5055 1.2768 14 6 -0.8061 -6.6573 0.0770 15 6 -0.0146 -6.4190 -1.2129 16 1 0.7663 -7.1738 -1.3059 17 7 -0.9176 -6.5053 -2.3634 18 6 -2.2043 -6.1113 -2.3842 19 7 -2.6710 -6.3459 -3.5842 20 6 -1.6727 -6.8933 -4.3011 21 6 -1.7510 -7.3256 -5.7131 22 7 -2.9026 -7.1832 -6.3986 23 8 -0.7767 -7.8094 -6.2555 24 7 -0.6151 -6.9762 -3.5240 25 6 0.6220 -5.0282 -1.1662 26 1 -0.4850 0.8400 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6249 -2.5571 0.8897 29 1 2.8721 -3.6043 0.8895 30 1 2.8721 -3.6043 -0.8905 31 1 -0.0176 -4.3567 1.3185 32 1 1.4453 -5.0063 2.0969 33 1 0.9164 -7.2616 1.2238 34 1 -0.4326 -6.6317 2.2000 35 1 -1.2254 -7.6633 0.0677 36 1 -1.6115 -5.9266 0.1502 37 1 -2.7518 -5.6773 -1.5607 38 1 -3.6800 -6.7968 -5.9659 39 1 -2.9541 -7.4671 -7.3247 40 1 -0.1603 -4.2731 -1.0878 41 1 1.1976 -4.8615 -2.0766 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331158008.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:04 Heat of formation + Delta-G solvation = 48.085254 kcal Electronic energy + Delta-G solvation = -23521.144400 eV Core-core repulsion = 20051.514501 eV Total energy + Delta-G solvation = -3469.629898 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.54138 -39.41720 -38.96740 -35.28362 -34.00846 -33.32413 -32.54350 -31.69319 -29.72721 -29.01044 -25.44489 -24.98509 -23.79059 -23.19239 -22.11848 -20.82957 -20.64975 -19.18612 -18.28149 -17.28805 -16.64779 -16.55498 -16.33503 -15.33643 -15.15784 -14.93717 -14.64523 -14.47088 -14.11931 -13.96044 -13.80909 -13.36910 -12.78282 -12.53534 -12.28858 -12.05986 -11.68744 -11.41484 -11.10314 -10.97581 -10.85134 -10.78373 -10.67089 -10.51649 -10.50501 -10.25807 -10.02008 -9.90686 -9.86923 -9.56329 -9.27911 -8.45703 -7.79194 -6.12173 -4.15396 1.35722 1.98931 2.08478 3.18077 3.26537 3.30976 3.31339 3.33772 4.06401 4.17500 4.28262 4.39160 4.58750 4.67037 4.77551 4.84837 5.08282 5.16096 5.24329 5.39276 5.56101 5.68370 5.72702 5.76606 5.88584 5.96524 6.06187 6.19035 6.21404 6.28732 6.43088 6.49994 6.56080 6.72847 7.07593 7.25468 7.28012 7.51112 7.64186 7.86208 7.91521 8.12445 8.28531 8.90800 9.49772 10.98917 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.015164 B = 0.003799 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.031190 B = 7367.715563 C = 8470.401037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.056 0.944 9 C -0.008 4.008 10 C 0.058 3.942 11 N -0.535 5.535 12 C 0.045 3.955 13 C -0.109 4.109 14 C -0.129 4.129 15 C 0.148 3.852 16 H 0.119 0.881 17 N -0.285 5.285 18 C 0.198 3.802 19 N -0.489 5.489 20 C 0.124 3.876 21 C 0.626 3.374 22 N -0.834 5.834 23 O -0.524 6.524 24 N -0.243 5.243 25 C 0.047 3.953 26 H 0.262 0.738 27 H 0.016 0.984 28 H 0.018 0.982 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.048 0.952 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.224 0.776 38 H 0.411 0.589 39 H 0.409 0.591 40 H 0.056 0.944 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.387 -14.853 -1.596 16.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.142 4.142 3 Si 0.721 3.279 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.562 4.562 8 H 0.075 0.925 9 C -0.046 4.046 10 C -0.068 4.068 11 N -0.259 5.259 12 C -0.083 4.083 13 C -0.148 4.148 14 C -0.167 4.167 15 C 0.047 3.953 16 H 0.137 0.863 17 N -0.080 5.080 18 C -0.097 4.097 19 N -0.215 5.215 20 C -0.156 4.156 21 C 0.407 3.593 22 N -0.400 5.400 23 O -0.396 6.396 24 N -0.083 5.083 25 C -0.082 4.082 26 H 0.071 0.929 27 H 0.034 0.966 28 H 0.036 0.964 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.240 0.760 38 H 0.241 0.759 39 H 0.241 0.759 40 H 0.074 0.926 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.160 -15.612 -2.181 16.924 hybrid contribution -0.685 2.030 0.221 2.154 sum -6.844 -13.582 -1.961 15.335 Atomic orbital electron populations 1.69931 1.06113 1.26898 1.50447 1.25008 0.94851 0.99358 0.95010 0.86637 0.79610 0.82941 0.78735 1.20148 1.21238 1.20145 1.21093 0.93054 0.90826 1.51213 0.92546 1.19661 0.94918 0.92859 0.97209 1.22371 0.96794 0.86020 1.01660 1.62276 1.26304 1.36599 1.00762 1.22174 0.97624 0.95548 0.93005 1.21551 0.98333 0.98411 0.96484 1.22014 0.98911 1.02815 0.92984 1.21896 0.91322 1.01671 0.80393 0.86265 1.47677 1.10784 1.40232 1.09332 1.26368 0.84799 1.00839 0.97741 1.71215 1.29898 1.17806 1.02584 1.23555 0.87792 1.06830 0.97388 1.16244 0.83274 0.77495 0.82284 1.43427 1.13807 1.66320 1.16409 1.90873 1.36069 1.43883 1.68781 1.74327 1.25098 1.16329 0.92515 1.22319 0.96996 0.92697 0.96219 0.92860 0.96552 0.96398 0.91330 0.91644 0.93403 0.90264 0.90737 0.90460 0.90656 0.90572 0.75962 0.75860 0.75895 0.92599 0.89971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.98 13.29 55.43 0.74 -25.24 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -14.21 9.11 -34.44 -0.31 -14.52 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C -0.01 -0.20 4.27 -27.88 -0.12 -0.32 16 10 C 0.06 1.12 5.30 -3.82 -0.02 1.10 16 11 N -0.54 -8.43 4.86 -234.66 -1.14 -9.57 16 12 C 0.04 0.61 5.05 -3.83 -0.02 0.59 16 13 C -0.11 -1.07 6.09 -26.65 -0.16 -1.23 16 14 C -0.13 -1.21 4.97 -26.56 -0.13 -1.35 16 15 C 0.15 1.81 3.28 -67.81 -0.22 1.59 16 16 H 0.12 1.47 8.14 -51.92 -0.42 1.04 16 17 N -0.29 -3.85 3.24 -55.94 -0.18 -4.03 16 18 C 0.20 2.40 11.71 -90.48 -1.06 1.34 16 19 N -0.49 -6.58 11.09 -12.36 -0.14 -6.72 16 20 C 0.12 1.87 7.96 -156.36 -1.24 0.63 16 21 C 0.63 8.89 8.10 -12.32 -0.10 8.79 16 22 N -0.83 -7.62 8.87 30.54 0.27 -7.35 16 23 O -0.52 -9.22 17.92 5.32 0.10 -9.12 16 24 N -0.24 -3.92 12.08 32.07 0.39 -3.53 16 25 C 0.05 0.73 4.44 -3.84 -0.02 0.71 16 26 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 27 H 0.02 0.42 6.51 -51.93 -0.34 0.08 16 28 H 0.02 0.45 6.68 -51.93 -0.35 0.10 16 29 H 0.07 1.29 8.06 -51.93 -0.42 0.87 16 30 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.05 0.74 6.76 -51.93 -0.35 0.39 16 32 H 0.08 1.06 8.06 -51.93 -0.42 0.64 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.68 7.01 -51.93 -0.36 0.31 16 37 H 0.22 1.87 7.16 -52.49 -0.38 1.49 16 38 H 0.41 3.09 8.54 -40.82 -0.35 2.74 16 39 H 0.41 2.76 8.93 -40.82 -0.36 2.40 16 40 H 0.06 0.96 6.61 -51.93 -0.34 0.62 16 41 H 0.08 1.40 8.12 -51.93 -0.42 0.98 16 LS Contribution 337.15 15.07 5.08 5.08 Total: -1.00 -33.52 337.15 -9.16 -42.69 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -5.75 Total: 2.75 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -3.51 Total: -1.13 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: -0.06 Total: -56.43 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.10 Total: -9.12 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.52 -9.16 -42.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331158008.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.771 kcal (2) G-P(sol) polarization free energy of solvation -33.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds