Wall clock time and date at job start Tue Mar 31 2020 03:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99823 * 2 1 4 4 H 1.48500 * 109.47303 * 240.00253 * 3 2 1 5 5 H 1.48498 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47211 * 120.00346 * 3 2 1 7 7 C 1.37883 * 120.00628 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00704 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99594 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47111 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.47139 * 180.02562 * 10 9 7 12 12 C 1.46856 * 110.99619 * 293.95452 * 11 10 9 13 13 C 1.53039 * 109.51787 * 185.84053 * 12 11 10 14 14 C 1.53123 * 109.31189 * 300.79882 * 13 12 11 15 15 C 1.53203 * 109.11533 * 57.63615 * 14 13 12 16 16 H 1.09007 * 109.52297 * 62.34418 * 15 14 13 17 17 N 1.46504 * 109.48949 * 182.41992 * 15 14 13 18 18 C 1.34583 * 125.74604 * 34.54861 * 17 15 14 19 19 N 1.30873 * 107.61974 * 179.86087 * 18 17 15 20 20 C 1.34543 * 107.27217 * 0.38770 * 19 18 17 21 21 C 1.47876 * 126.05072 * 179.73425 * 20 19 18 22 22 N 1.34772 * 119.99790 * 0.02562 * 21 20 19 23 23 O 1.21550 * 120.00016 * 180.02562 * 21 20 19 24 24 N 1.28854 * 125.74503 * 214.84559 * 17 15 14 25 25 C 1.46846 * 111.00121 * 58.16335 * 11 10 9 26 26 H 0.96992 * 120.00288 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.46979 * 59.99792 * 9 7 2 28 28 H 1.09002 * 109.47115 * 300.00084 * 9 7 2 29 29 H 1.09000 * 109.46927 * 60.00064 * 10 9 7 30 30 H 1.09002 * 109.47148 * 300.00001 * 10 9 7 31 31 H 1.09000 * 109.46462 * 65.82793 * 12 11 10 32 32 H 1.09002 * 109.45930 * 305.85061 * 12 11 10 33 33 H 1.09002 * 109.50563 * 60.76214 * 13 12 11 34 34 H 1.09003 * 109.50107 * 180.84195 * 13 12 11 35 35 H 1.08994 * 109.52349 * 177.58253 * 14 13 12 36 36 H 1.08997 * 109.52263 * 297.77214 * 14 13 12 37 37 H 1.07997 * 126.19103 * 0.02562 * 18 17 15 38 38 H 0.97004 * 120.00433 * 0.02562 * 22 21 20 39 39 H 0.97000 * 120.00087 * 180.02562 * 22 21 20 40 40 H 1.09004 * 109.46012 * 294.17710 * 25 11 10 41 41 H 1.08997 * 109.46257 * 54.15030 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 7 1.5110 -4.9343 -0.0012 12 6 0.7654 -5.1121 1.2515 13 6 0.1331 -6.5055 1.2768 14 6 -0.8061 -6.6573 0.0770 15 6 -0.0146 -6.4190 -1.2129 16 1 0.7663 -7.1738 -1.3059 17 7 -0.9176 -6.5053 -2.3634 18 6 -2.2043 -6.1113 -2.3842 19 7 -2.6710 -6.3459 -3.5842 20 6 -1.6727 -6.8933 -4.3011 21 6 -1.7510 -7.3256 -5.7131 22 7 -2.9026 -7.1832 -6.3986 23 8 -0.7767 -7.8094 -6.2555 24 7 -0.6151 -6.9762 -3.5240 25 6 0.6220 -5.0282 -1.1662 26 1 -0.4850 0.8400 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6249 -2.5571 0.8897 29 1 2.8721 -3.6043 0.8895 30 1 2.8721 -3.6043 -0.8905 31 1 -0.0176 -4.3567 1.3185 32 1 1.4453 -5.0063 2.0969 33 1 0.9164 -7.2616 1.2238 34 1 -0.4326 -6.6317 2.2000 35 1 -1.2254 -7.6633 0.0677 36 1 -1.6115 -5.9266 0.1502 37 1 -2.7518 -5.6773 -1.5607 38 1 -3.6800 -6.7968 -5.9659 39 1 -2.9541 -7.4671 -7.3247 40 1 -0.1603 -4.2731 -1.0878 41 1 1.1976 -4.8615 -2.0766 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331158008.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:03 Heat of formation + Delta-G solvation = 22.614294 kcal Electronic energy + Delta-G solvation = -23522.248903 eV Core-core repulsion = 20051.514501 eV Total energy + Delta-G solvation = -3470.734402 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.60156 -40.54577 -40.13131 -36.59418 -35.24339 -34.71063 -33.93661 -32.78748 -31.08073 -30.47711 -27.03866 -26.06715 -25.02834 -24.61022 -23.26694 -22.15129 -21.71833 -20.37413 -19.30253 -18.66279 -18.12201 -17.68709 -17.52979 -16.66037 -16.38787 -16.23622 -16.05805 -15.61084 -15.31534 -15.14068 -15.09279 -14.61839 -14.14641 -14.06278 -13.69967 -13.24245 -13.18561 -12.82650 -12.72618 -12.66667 -12.05926 -11.91551 -11.82397 -11.77916 -11.65663 -11.60733 -11.58396 -11.38156 -11.23109 -10.89068 -10.62079 -10.56929 -9.23640 -8.24532 -6.35564 0.24563 0.96915 1.08551 1.37890 1.39627 1.47478 2.18076 2.22850 2.37118 3.00325 3.08799 3.09022 3.33495 3.56877 3.74375 3.82389 3.90555 4.10665 4.14163 4.39326 4.44204 4.53992 4.63278 4.71396 4.77959 4.84316 4.89600 4.97730 5.00103 5.10423 5.20789 5.37328 5.42859 5.47026 5.54436 5.68671 5.72808 5.92505 6.13629 6.18218 6.27201 6.80846 6.91792 7.14458 7.33915 8.85961 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.015164 B = 0.003799 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.031190 B = 7367.715563 C = 8470.401037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.006 3.994 3 Si 0.959 3.041 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.060 0.940 9 C 0.004 3.996 10 C 0.071 3.929 11 N -0.527 5.527 12 C 0.041 3.959 13 C -0.099 4.099 14 C -0.122 4.122 15 C 0.157 3.843 16 H 0.121 0.879 17 N -0.288 5.288 18 C 0.204 3.796 19 N -0.492 5.492 20 C 0.112 3.888 21 C 0.622 3.378 22 N -0.804 5.804 23 O -0.567 6.567 24 N -0.280 5.280 25 C 0.054 3.946 26 H 0.263 0.737 27 H -0.011 1.011 28 H 0.001 0.999 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.025 0.975 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.084 0.916 37 H 0.260 0.740 38 H 0.422 0.578 39 H 0.423 0.577 40 H 0.033 0.967 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.045 -15.508 -0.540 17.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.193 4.193 3 Si 0.784 3.216 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.189 1.189 7 C -0.585 4.585 8 H 0.078 0.922 9 C -0.034 4.034 10 C -0.056 4.056 11 N -0.250 5.250 12 C -0.087 4.087 13 C -0.137 4.137 14 C -0.161 4.161 15 C 0.056 3.944 16 H 0.139 0.861 17 N -0.083 5.083 18 C -0.091 4.091 19 N -0.218 5.218 20 C -0.167 4.167 21 C 0.402 3.598 22 N -0.370 5.370 23 O -0.443 6.443 24 N -0.119 5.119 25 C -0.076 4.076 26 H 0.072 0.928 27 H 0.007 0.993 28 H 0.019 0.981 29 H 0.094 0.906 30 H 0.075 0.925 31 H 0.043 0.957 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.124 0.876 35 H 0.121 0.879 36 H 0.103 0.897 37 H 0.276 0.724 38 H 0.254 0.746 39 H 0.257 0.743 40 H 0.051 0.949 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.856 -16.277 -1.129 17.698 hybrid contribution -0.538 2.263 -0.106 2.329 sum -7.395 -14.013 -1.235 15.893 Atomic orbital electron populations 1.70052 1.07632 1.27801 1.51404 1.25886 0.95716 1.03090 0.94600 0.85586 0.78395 0.78468 0.79154 1.19621 1.20858 1.18950 1.21592 0.93589 0.92378 1.50892 0.92220 1.19494 0.95074 0.93911 0.94937 1.22095 0.95937 0.86058 1.01542 1.62297 1.26894 1.33808 1.02044 1.22318 0.96981 0.97707 0.91694 1.21531 0.98760 0.95545 0.97854 1.22065 0.98621 1.04680 0.90719 1.21872 0.91947 0.99044 0.81520 0.86110 1.47732 1.11350 1.40288 1.08911 1.27133 0.84360 0.99379 0.98198 1.71225 1.29559 1.18004 1.03002 1.23826 0.88052 1.06973 0.97890 1.16365 0.83859 0.77324 0.82231 1.43227 1.12569 1.64459 1.16784 1.90845 1.37746 1.46208 1.69530 1.74276 1.26217 1.17801 0.93647 1.22185 0.95887 0.94524 0.94992 0.92792 0.99290 0.98100 0.90627 0.92461 0.95666 0.89904 0.89705 0.87619 0.87912 0.89712 0.72449 0.74557 0.74265 0.94886 0.92553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.82 13.29 21.45 0.28 -54.54 16 2 C 0.01 0.31 5.46 84.66 0.46 0.77 16 3 Si 0.96 43.47 29.54 68.60 2.03 45.49 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 7 C -0.55 -30.14 9.11 25.60 0.23 -29.91 16 8 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 9 C 0.00 0.20 4.27 29.85 0.13 0.33 16 10 C 0.07 2.80 5.30 86.30 0.46 3.26 16 11 N -0.53 -16.58 4.86 -896.34 -4.35 -20.94 16 12 C 0.04 1.06 5.05 86.32 0.44 1.50 16 13 C -0.10 -1.62 6.09 30.65 0.19 -1.44 16 14 C -0.12 -1.95 4.97 30.70 0.15 -1.80 16 15 C 0.16 3.67 3.28 45.07 0.15 3.82 16 16 H 0.12 2.83 8.14 -2.38 -0.02 2.81 16 17 N -0.29 -7.56 3.24 -330.90 -1.07 -8.63 16 18 C 0.20 4.62 11.71 180.30 2.11 6.73 16 19 N -0.49 -12.65 11.09 -193.03 -2.14 -14.79 16 20 C 0.11 3.37 7.96 137.13 1.09 4.46 16 21 C 0.62 17.61 8.10 86.80 0.70 18.32 16 22 N -0.80 -13.81 8.87 -175.59 -1.56 -15.36 16 23 O -0.57 -20.38 17.92 -3.87 -0.07 -20.45 16 24 N -0.28 -9.05 12.08 -52.44 -0.63 -9.68 16 25 C 0.05 1.69 4.44 86.32 0.38 2.07 16 26 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 27 H -0.01 -0.61 6.51 -2.39 -0.02 -0.63 16 28 H 0.00 0.04 6.68 -2.39 -0.02 0.02 16 29 H 0.08 2.85 8.06 -2.39 -0.02 2.83 16 30 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.02 0.78 6.76 -2.39 -0.02 0.76 16 32 H 0.08 2.10 8.06 -2.39 -0.02 2.08 16 33 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.08 1.24 7.01 -2.39 -0.02 1.22 16 37 H 0.26 3.60 7.16 -2.91 -0.02 3.58 16 38 H 0.42 5.66 8.54 -92.71 -0.79 4.87 16 39 H 0.42 5.14 8.93 -92.71 -0.83 4.32 16 40 H 0.03 1.18 6.61 -2.38 -0.02 1.17 16 41 H 0.06 2.03 8.12 -2.39 -0.02 2.01 16 Total: -1.00 -75.00 337.15 -1.57 -76.58 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -0.55 Total: 14.21 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: 6.49 Total: 8.11 kcal Atomic # 7 Polarization: -114.47 SS G_CDS: -9.47 Total: -123.94 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -0.07 Total: -20.45 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Total: -75.00 -1.57 -76.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331158008.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.190 kcal (2) G-P(sol) polarization free energy of solvation -75.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds