Wall clock time and date at job start Tue Mar 31 2020 03:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 113.99728 * 2 1 4 4 H 1.08996 * 109.47581 * 30.00138 * 3 2 1 5 5 C 1.50701 * 109.46984 * 269.99694 * 3 2 1 6 6 O 1.21279 * 119.99948 * 353.61749 * 5 3 2 7 7 N 1.34772 * 119.99851 * 173.62042 * 5 3 2 8 8 C 1.46499 * 119.99847 * 185.02146 * 7 5 3 9 9 C 1.53000 * 109.47299 * 184.60927 * 8 7 5 10 10 C 1.50706 * 115.54765 * 295.12847 * 9 8 7 11 11 H 1.08000 * 119.99807 * 92.40708 * 10 9 8 12 12 C 1.37873 * 119.99954 * 272.41113 * 10 9 8 13 13 N 1.31521 * 119.99947 * 183.34564 * 12 10 9 14 14 Si 1.86802 * 120.00031 * 3.34159 * 12 10 9 15 15 H 1.48499 * 109.47195 * 265.47649 * 14 12 10 16 16 H 1.48503 * 109.46923 * 25.48092 * 14 12 10 17 17 H 1.48498 * 109.47014 * 145.47616 * 14 12 10 18 18 C 1.53000 * 117.50196 * 80.79585 * 9 8 7 19 19 C 1.52999 * 117.50445 * 149.45785 * 9 8 7 20 20 C 1.50703 * 109.46852 * 150.00119 * 3 2 1 21 21 C 1.39866 * 126.04156 * 36.91163 * 20 3 2 22 22 N 1.30840 * 108.20613 * 179.82017 * 21 20 3 23 23 N 1.40089 * 108.20124 * 0.43980 * 22 21 20 24 24 C 1.46492 * 126.03809 * 179.74368 * 23 22 21 25 25 C 1.34954 * 107.92612 * 359.71684 * 23 22 21 26 26 H 1.08998 * 109.47522 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47599 * 300.00383 * 1 2 3 28 28 H 1.09004 * 109.47107 * 59.99929 * 1 2 3 29 29 H 0.97000 * 119.99980 * 5.01892 * 7 5 3 30 30 H 1.08998 * 109.47265 * 64.60898 * 8 7 5 31 31 H 1.09002 * 109.46957 * 304.60700 * 8 7 5 32 32 H 0.97000 * 119.99807 * 179.97438 * 13 12 10 33 33 H 1.08998 * 117.50078 * 215.00525 * 18 9 8 34 34 H 1.08999 * 117.49770 * 0.02562 * 18 9 8 35 35 H 1.08996 * 117.49538 * 359.97438 * 19 9 8 36 36 H 1.09003 * 117.50157 * 144.97169 * 19 9 8 37 37 H 1.08003 * 125.89662 * 359.97438 * 21 20 3 38 38 H 1.09005 * 109.47111 * 269.96876 * 24 23 22 39 39 H 1.09002 * 109.47479 * 29.97181 * 24 23 22 40 40 H 1.09005 * 109.47520 * 149.97581 * 24 23 22 41 41 H 1.07996 * 126.12836 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2145 1.7644 -1.4208 6 8 2.0032 1.0025 -2.3404 7 7 2.6322 3.0214 -1.6695 8 6 2.7254 3.5026 -3.0501 9 6 3.3290 4.9085 -3.0605 10 6 2.4994 5.9770 -2.3963 11 1 2.6541 6.2103 -1.3532 12 6 1.5428 6.6565 -3.1203 13 7 0.8645 7.6337 -2.5591 14 14 1.2104 6.1896 -4.8982 15 1 2.0127 7.0581 -5.7965 16 1 1.5874 4.7698 -5.1158 17 1 -0.2334 6.3694 -5.1955 18 6 4.8506 5.0249 -2.9500 19 6 4.1554 5.3135 -4.2828 20 6 3.3386 1.2639 0.7104 21 6 4.2660 0.2181 0.6608 22 7 5.2940 0.5479 1.3999 23 7 5.0485 1.8117 1.9521 24 6 5.9431 2.5499 2.8469 25 6 3.8423 2.2293 1.5137 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 2.8710 3.6075 -0.9344 30 1 1.7298 3.5314 -3.4928 31 1 3.3603 2.8303 -3.6271 32 1 0.1918 8.1120 -3.0686 33 1 5.2515 5.8742 -2.3969 34 1 5.4216 4.0998 -2.8702 35 1 4.2693 4.5783 -5.0793 36 1 4.0986 6.3527 -4.6068 37 1 4.1540 -0.7018 0.1060 38 1 5.7168 2.2914 3.8813 39 1 6.9774 2.2871 2.6246 40 1 5.8009 3.6207 2.7006 41 1 3.3646 3.1660 1.7603 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331696818.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:31 Heat of formation + Delta-G solvation = 7.043514 kcal Electronic energy + Delta-G solvation = -23979.628459 eV Core-core repulsion = 20475.926106 eV Total energy + Delta-G solvation = -3503.702353 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.30530 -40.76055 -39.00267 -38.03853 -35.07111 -34.26210 -34.16526 -32.32315 -29.44673 -28.39282 -27.35906 -27.13001 -25.72537 -23.36590 -22.15911 -21.90266 -21.22918 -20.82058 -18.76735 -18.33692 -17.87158 -17.43765 -16.93830 -16.57599 -16.24350 -16.04805 -15.78032 -15.51178 -15.22529 -14.99054 -14.75242 -14.27110 -14.08052 -13.98381 -13.77411 -13.52097 -13.38726 -13.09306 -12.96050 -12.65139 -12.37676 -12.20902 -11.97238 -11.67982 -11.56597 -11.53726 -10.96741 -10.69498 -10.58005 -10.38855 -10.25966 -9.88755 -9.39018 -8.28606 -6.33860 0.87811 1.33801 1.41277 1.50978 1.52334 1.65416 1.81526 2.17994 2.37567 2.93066 3.06957 3.26429 3.66770 3.89605 3.94420 4.03503 4.12383 4.21590 4.35581 4.35839 4.41241 4.50612 4.52791 4.55367 4.59126 4.76433 4.81362 4.84659 4.85230 4.86224 4.94934 5.07474 5.27734 5.46033 5.55393 5.59107 5.71238 6.02762 6.11647 6.30553 6.67157 6.71192 6.76751 7.32680 7.37089 8.85268 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.015010 B = 0.005143 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.028239 B = 5443.108668 C = 6299.410591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.373 6.373 3 C 0.167 3.833 4 H 0.115 0.885 5 C 0.488 3.512 6 O -0.583 6.583 7 N -0.694 5.694 8 C 0.164 3.836 9 C -0.034 4.034 10 C -0.475 4.475 11 H 0.055 0.945 12 C 0.034 3.966 13 N -0.939 5.939 14 Si 0.920 3.080 15 H -0.271 1.271 16 H -0.244 1.244 17 H -0.301 1.301 18 C -0.151 4.151 19 C -0.194 4.194 20 C -0.260 4.260 21 C 0.066 3.934 22 N -0.328 5.328 23 N -0.371 5.371 24 C 0.091 3.909 25 C 0.088 3.912 26 H 0.105 0.895 27 H 0.066 0.934 28 H 0.028 0.972 29 H 0.410 0.590 30 H 0.038 0.962 31 H 0.048 0.952 32 H 0.264 0.736 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.180 0.820 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.114 0.886 41 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.639 -9.539 10.799 15.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.290 6.290 3 C 0.104 3.896 4 H 0.132 0.868 5 C 0.275 3.725 6 O -0.463 6.463 7 N -0.345 5.345 8 C 0.040 3.960 9 C -0.036 4.036 10 C -0.513 4.513 11 H 0.073 0.927 12 C -0.165 4.165 13 N -0.578 5.578 14 Si 0.747 3.253 15 H -0.197 1.197 16 H -0.167 1.167 17 H -0.228 1.228 18 C -0.188 4.188 19 C -0.232 4.232 20 C -0.272 4.272 21 C -0.119 4.119 22 N -0.150 5.150 23 N -0.152 5.152 24 C -0.048 4.048 25 C -0.060 4.060 26 H 0.123 0.877 27 H 0.085 0.915 28 H 0.047 0.953 29 H 0.246 0.754 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.099 0.901 37 H 0.197 0.803 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.133 0.867 41 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 6.726 -10.389 10.678 16.346 hybrid contribution -1.445 0.873 -1.170 2.054 sum 5.281 -9.516 9.508 14.452 Atomic orbital electron populations 1.23033 0.79356 1.04316 1.00454 1.87924 1.21407 1.25334 1.94338 1.19858 0.93281 0.87057 0.89390 0.86752 1.21863 0.76285 0.81542 0.92834 1.90629 1.53164 1.54809 1.47730 1.45746 1.66050 1.13253 1.09444 1.20883 0.98975 0.93446 0.82702 1.19456 0.91367 0.92650 1.00085 1.20319 1.17302 1.16465 0.97217 0.92733 1.25575 0.95389 0.94171 1.01387 1.69992 1.25704 1.23225 1.38894 0.86164 0.76382 0.80824 0.81957 1.19688 1.16711 1.22835 1.22817 0.94618 1.02132 0.99278 1.23011 1.06822 1.01342 0.92018 1.19474 0.98719 0.98710 1.10306 1.23769 0.90778 0.99978 0.97383 1.77337 1.23789 0.97491 1.16393 1.48815 1.15170 1.13763 1.37419 1.22272 0.93609 0.96627 0.92341 1.22766 0.87413 1.00448 0.95414 0.87668 0.91544 0.95282 0.75388 0.94375 0.93400 0.92664 0.89207 0.88931 0.88893 0.90114 0.80285 0.88901 0.89113 0.86713 0.76954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.56 10.81 113.37 1.23 1.79 16 2 O -0.37 -10.95 9.63 -130.02 -1.25 -12.21 16 3 C 0.17 4.67 2.96 29.10 0.09 4.76 16 4 H 0.11 2.58 7.79 -2.39 -0.02 2.56 16 5 C 0.49 17.63 7.10 87.66 0.62 18.25 16 6 O -0.58 -25.66 16.50 15.93 0.26 -25.40 16 7 N -0.69 -24.95 5.45 -463.07 -2.52 -27.47 16 8 C 0.16 6.74 5.12 86.38 0.44 7.18 16 9 C -0.03 -1.43 0.83 -52.93 -0.04 -1.48 16 10 C -0.48 -23.86 9.17 25.60 0.23 -23.62 16 11 H 0.05 2.94 8.06 -2.91 -0.02 2.91 16 12 C 0.03 1.80 5.47 84.65 0.46 2.26 16 13 N -0.94 -54.45 13.96 21.45 0.30 -54.15 16 14 Si 0.92 42.89 24.96 68.60 1.71 44.61 16 15 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 16 H -0.24 -10.80 5.63 99.48 0.56 -10.24 16 17 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 18 C -0.15 -5.38 9.96 30.62 0.30 -5.07 16 19 C -0.19 -7.47 7.59 30.62 0.23 -7.24 16 20 C -0.26 -6.75 5.10 -20.14 -0.10 -6.85 16 21 C 0.07 1.89 11.66 85.23 0.99 2.88 16 22 N -0.33 -9.08 12.58 -57.02 -0.72 -9.80 16 23 N -0.37 -7.83 4.01 -369.56 -1.48 -9.31 16 24 C 0.09 1.05 11.47 127.77 1.47 2.52 16 25 C 0.09 1.80 11.40 83.54 0.95 2.75 16 26 H 0.10 1.99 8.14 -2.39 -0.02 1.98 16 27 H 0.07 1.19 8.09 -2.39 -0.02 1.17 16 28 H 0.03 0.76 8.14 -2.38 -0.02 0.74 16 29 H 0.41 13.29 8.33 -92.71 -0.77 12.51 16 30 H 0.04 1.74 6.62 -2.39 -0.02 1.72 16 31 H 0.05 1.94 8.06 -2.39 -0.02 1.92 16 32 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 33 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 34 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 35 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 36 H 0.08 3.27 7.32 -2.39 -0.02 3.25 16 37 H 0.18 5.00 8.06 -2.91 -0.02 4.97 16 38 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 39 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.11 0.80 8.14 -2.38 -0.02 0.78 16 41 H 0.21 2.72 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -72.15 349.36 3.29 -68.85 By element: Atomic # 1 Polarization: 26.63 SS G_CDS: 0.12 Total: 26.74 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: 6.88 Total: -1.87 kcal Atomic # 7 Polarization: -96.31 SS G_CDS: -4.42 Total: -100.73 kcal Atomic # 8 Polarization: -36.62 SS G_CDS: -0.99 Total: -37.61 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 1.71 Total: 44.61 kcal Total: -72.15 3.29 -68.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331696818.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.898 kcal (2) G-P(sol) polarization free energy of solvation -72.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds