Wall clock time and date at job start Tue Mar 31 2020 03:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34948 * 126.03993 * 2 1 4 4 C 1.35315 * 107.74520 * 179.97438 * 3 2 1 5 5 C 1.50700 * 126.03610 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.87187 * 25.70166 * 5 4 3 7 7 O 1.43746 * 109.87707 * 146.71281 * 5 4 3 8 8 C 1.44575 * 106.87023 * 145.82944 * 7 5 4 9 9 C 1.55001 * 103.58350 * 320.11913 * 8 7 5 10 10 C 1.54102 * 109.87835 * 264.69866 * 5 4 3 11 11 H 1.09001 * 110.48554 * 357.21993 * 10 5 4 12 12 C 1.50696 * 110.49238 * 119.87029 * 10 5 4 13 13 O 1.21282 * 119.99929 * 0.02562 * 12 10 5 14 14 N 1.34772 * 120.00034 * 179.97438 * 12 10 5 15 15 C 1.46506 * 119.99655 * 180.02562 * 14 12 10 16 16 C 1.53006 * 109.47042 * 180.02562 * 15 14 12 17 17 C 1.50693 * 109.47078 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00205 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99842 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99979 * 359.97438 * 19 17 16 21 21 Si 1.86810 * 120.00056 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46769 * 90.00058 * 21 19 17 23 23 H 1.48497 * 109.46957 * 209.99970 * 21 19 17 24 24 H 1.48492 * 109.46757 * 330.00079 * 21 19 17 25 25 C 1.39870 * 107.92205 * 0.02562 * 4 3 2 26 26 N 1.30839 * 108.19862 * 359.97438 * 25 4 3 27 27 H 1.09008 * 109.47064 * 89.99169 * 1 2 3 28 28 H 1.08998 * 109.47431 * 209.99518 * 1 2 3 29 29 H 1.08999 * 109.46741 * 329.99840 * 1 2 3 30 30 H 1.08007 * 126.12251 * 0.27272 * 3 2 1 31 31 H 1.08998 * 110.63760 * 201.55788 * 8 7 5 32 32 H 1.08998 * 110.50737 * 78.61594 * 8 7 5 33 33 H 1.09002 * 110.90201 * 278.74351 * 9 8 7 34 34 H 1.08998 * 110.91089 * 155.14780 * 9 8 7 35 35 H 0.96995 * 120.00495 * 0.02562 * 14 12 10 36 36 H 1.08998 * 109.47280 * 300.00100 * 15 14 12 37 37 H 1.08997 * 109.47079 * 60.00502 * 15 14 12 38 38 H 1.08998 * 109.46920 * 300.00021 * 16 15 14 39 39 H 1.08999 * 109.47021 * 59.99389 * 16 15 14 40 40 H 0.97005 * 119.99596 * 179.97438 * 20 19 17 41 41 H 1.07997 * 125.89658 * 179.97438 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6664 0.0006 5 6 4.7680 1.5452 0.0002 6 1 4.5303 2.5119 0.4441 7 8 5.8238 0.9126 0.7428 8 6 7.0657 1.2730 0.0962 9 6 6.7235 1.2031 -1.4139 10 6 5.2721 1.7409 -1.4428 11 1 4.6652 1.1638 -2.1404 12 6 5.2582 3.2017 -1.8129 13 8 4.8826 4.0276 -1.0080 14 7 5.6640 3.5904 -3.0378 15 6 5.6510 5.0106 -3.3973 16 6 6.1549 5.1781 -4.8323 17 6 6.1420 6.6389 -5.2019 18 1 5.8075 7.3744 -4.4852 19 6 6.5573 7.0366 -6.4550 20 7 6.9652 6.1411 -7.3276 21 14 6.5408 8.8475 -6.9135 22 1 7.8463 9.4598 -6.5587 23 1 6.3094 8.9863 -8.3737 24 1 5.4536 9.5358 -6.1723 25 6 3.5346 -0.7322 0.0003 26 7 2.2891 -1.1328 0.0002 27 1 -0.3634 0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5137 29 1 -0.3633 0.8900 0.5139 30 1 1.9281 2.1193 0.0042 31 1 7.8501 0.5583 0.3455 32 1 7.3627 2.2837 0.3761 33 1 6.7649 0.1754 -1.7749 34 1 7.3876 1.8444 -1.9934 35 1 5.9648 2.9300 -3.6814 36 1 4.6338 5.3950 -3.3227 37 1 6.2992 5.5634 -2.7175 38 1 7.1720 4.7936 -4.9074 39 1 5.5064 4.6252 -5.5119 40 1 7.2570 6.4210 -8.2093 41 1 4.4054 -1.3711 0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332356135.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:42 Heat of formation + Delta-G solvation = -11.709489 kcal Electronic energy + Delta-G solvation = -23122.856609 eV Core-core repulsion = 19618.341065 eV Total energy + Delta-G solvation = -3504.515544 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.46415 -40.11107 -38.15684 -34.93636 -33.53130 -33.02379 -32.31637 -31.27701 -29.57923 -28.54658 -26.58611 -24.96207 -23.09761 -22.52581 -21.09503 -21.03174 -20.38631 -19.69543 -17.48911 -17.09496 -16.49217 -15.82244 -15.68738 -15.53274 -15.02235 -14.74001 -14.66684 -14.43630 -14.36940 -13.46914 -13.43015 -13.07364 -13.04152 -12.89728 -12.62974 -12.35897 -11.98266 -11.70151 -11.33420 -11.23956 -11.21934 -11.05866 -10.75555 -10.67310 -10.37637 -9.90861 -9.69058 -9.54742 -9.49415 -9.23469 -8.59961 -8.48651 -8.40483 -6.12965 -4.16037 1.73226 2.35737 2.62684 2.88914 3.26841 3.33084 3.36573 3.54158 3.93198 4.35936 4.38671 4.44953 4.69599 4.76922 4.84433 4.88363 4.99012 5.12483 5.15738 5.22486 5.24191 5.28535 5.42747 5.53485 5.62446 5.71753 5.82701 5.95318 6.11415 6.28335 6.29307 6.51762 6.68352 6.78359 6.85377 6.87601 7.46994 7.56168 7.56829 7.84822 7.93998 8.23299 8.56206 8.89955 9.49094 10.98561 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.021026 B = 0.003041 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.363186 B = 9204.057719 C = 9946.438965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.379 5.379 3 C 0.070 3.930 4 C -0.237 4.237 5 C 0.168 3.832 6 H 0.099 0.901 7 O -0.367 6.367 8 C 0.047 3.953 9 C -0.146 4.146 10 C -0.139 4.139 11 H 0.110 0.890 12 C 0.514 3.486 13 O -0.548 6.548 14 N -0.719 5.719 15 C 0.121 3.879 16 C 0.013 3.987 17 C -0.522 4.522 18 H 0.059 0.941 19 C 0.059 3.941 20 N -0.894 5.894 21 Si 0.897 3.103 22 H -0.279 1.279 23 H -0.286 1.286 24 H -0.272 1.272 25 C 0.072 3.928 26 N -0.304 5.304 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.177 0.823 31 H 0.095 0.905 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.398 0.602 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.022 0.978 39 H 0.022 0.978 40 H 0.262 0.738 41 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.787 -14.193 13.380 20.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.160 5.160 3 C -0.076 4.076 4 C -0.249 4.249 5 C 0.108 3.892 6 H 0.117 0.883 7 O -0.286 6.286 8 C -0.030 4.030 9 C -0.184 4.184 10 C -0.161 4.161 11 H 0.128 0.872 12 C 0.299 3.701 13 O -0.426 6.426 14 N -0.368 5.368 15 C -0.001 4.001 16 C -0.025 4.025 17 C -0.561 4.561 18 H 0.077 0.923 19 C -0.143 4.143 20 N -0.533 5.533 21 Si 0.724 3.276 22 H -0.205 1.205 23 H -0.212 1.212 24 H -0.197 1.197 25 C -0.114 4.114 26 N -0.125 5.125 27 H 0.093 0.907 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.194 0.806 31 H 0.114 0.886 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.232 0.768 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.041 0.959 39 H 0.040 0.960 40 H 0.072 0.928 41 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -7.999 -14.732 13.944 21.805 hybrid contribution 0.703 1.522 -1.047 1.976 sum -7.296 -13.210 12.897 19.851 Atomic orbital electron populations 1.21853 0.74162 1.04434 1.03442 1.48455 1.06642 1.03815 1.57129 1.22289 0.90630 0.93587 1.01131 1.19914 0.93614 0.94151 1.17225 1.20751 0.84600 0.94897 0.88913 0.88330 1.88912 1.14641 1.72918 1.52099 1.23591 0.87715 1.01043 0.90656 1.23161 0.94270 1.02718 0.98208 1.22728 0.98898 0.94834 0.99655 0.87228 1.20232 0.77455 0.90009 0.82375 1.90646 1.48098 1.54082 1.49817 1.46320 1.65289 1.10995 1.14201 1.21745 1.00900 0.78027 0.99433 1.19320 0.96743 0.97904 0.88504 1.21044 1.44147 0.92051 0.98876 0.92256 1.24998 0.95016 0.97879 0.96371 1.69954 1.43698 1.33402 1.06209 0.86513 0.78552 0.84921 0.77589 1.20528 1.21154 1.19721 1.23699 0.94904 0.94407 0.98405 1.77355 1.01720 1.08226 1.25205 0.90709 0.89345 0.89431 0.80629 0.88643 0.91806 0.89402 0.89383 0.76822 0.92559 0.92490 0.95937 0.95967 0.92814 0.79928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.67 11.47 59.85 0.69 1.35 16 2 N -0.38 -4.16 4.01 -68.16 -0.27 -4.43 16 3 C 0.07 0.79 11.40 -17.22 -0.20 0.60 16 4 C -0.24 -2.95 4.95 -105.05 -0.52 -3.47 16 5 C 0.17 2.18 3.49 -27.31 -0.10 2.08 16 6 H 0.10 1.48 6.43 -51.93 -0.33 1.14 16 7 O -0.37 -4.72 10.91 -35.23 -0.38 -5.11 16 8 C 0.05 0.49 7.72 38.21 0.30 0.79 16 9 C -0.15 -1.47 6.70 -24.72 -0.17 -1.63 16 10 C -0.14 -1.71 3.06 -90.24 -0.28 -1.99 16 11 H 0.11 1.25 7.69 -51.93 -0.40 0.86 16 12 C 0.51 8.21 7.05 -10.99 -0.08 8.13 16 13 O -0.55 -10.57 15.25 5.56 0.08 -10.49 16 14 N -0.72 -11.90 5.40 -60.29 -0.33 -12.23 16 15 C 0.12 2.49 5.61 -4.04 -0.02 2.46 16 16 C 0.01 0.31 5.09 -27.88 -0.14 0.16 16 17 C -0.52 -14.25 9.11 -34.44 -0.31 -14.57 16 18 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.89 -25.78 13.29 55.43 0.74 -25.04 16 21 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 24 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 25 C 0.07 0.88 11.63 -17.36 -0.20 0.68 16 26 N -0.30 -3.92 12.57 30.62 0.39 -3.54 16 27 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 28 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.18 1.64 8.06 -52.48 -0.42 1.21 16 31 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.09 0.89 7.74 -51.93 -0.40 0.49 16 35 H 0.40 5.73 8.47 -40.82 -0.35 5.39 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 41 H 0.18 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 348.96 15.07 5.26 5.26 Total: -1.00 -33.47 348.96 -6.76 -40.24 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -6.10 Total: 3.12 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -1.13 Total: -3.85 kcal Atomic # 7 Polarization: -45.76 SS G_CDS: 0.52 Total: -45.24 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -0.30 Total: -15.60 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.47 -6.76 -40.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332356135.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.526 kcal (2) G-P(sol) polarization free energy of solvation -33.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds