Wall clock time and date at job start Tue Mar 31 2020 03:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34948 * 126.03993 * 2 1 4 4 C 1.35315 * 107.74520 * 179.97438 * 3 2 1 5 5 C 1.50700 * 126.03610 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.87187 * 25.70166 * 5 4 3 7 7 O 1.43746 * 109.87707 * 146.71281 * 5 4 3 8 8 C 1.44575 * 106.87023 * 145.82944 * 7 5 4 9 9 C 1.55001 * 103.58350 * 320.11913 * 8 7 5 10 10 C 1.54102 * 109.87835 * 264.69866 * 5 4 3 11 11 H 1.09001 * 110.48554 * 357.21993 * 10 5 4 12 12 C 1.50696 * 110.49238 * 119.87029 * 10 5 4 13 13 O 1.21282 * 119.99929 * 0.02562 * 12 10 5 14 14 N 1.34772 * 120.00034 * 179.97438 * 12 10 5 15 15 C 1.46506 * 119.99655 * 180.02562 * 14 12 10 16 16 C 1.53006 * 109.47042 * 180.02562 * 15 14 12 17 17 C 1.50693 * 109.47078 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00205 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99842 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99979 * 359.97438 * 19 17 16 21 21 Si 1.86810 * 120.00056 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46769 * 90.00058 * 21 19 17 23 23 H 1.48497 * 109.46957 * 209.99970 * 21 19 17 24 24 H 1.48492 * 109.46757 * 330.00079 * 21 19 17 25 25 C 1.39870 * 107.92205 * 0.02562 * 4 3 2 26 26 N 1.30839 * 108.19862 * 359.97438 * 25 4 3 27 27 H 1.09008 * 109.47064 * 89.99169 * 1 2 3 28 28 H 1.08998 * 109.47431 * 209.99518 * 1 2 3 29 29 H 1.08999 * 109.46741 * 329.99840 * 1 2 3 30 30 H 1.08007 * 126.12251 * 0.27272 * 3 2 1 31 31 H 1.08998 * 110.63760 * 201.55788 * 8 7 5 32 32 H 1.08998 * 110.50737 * 78.61594 * 8 7 5 33 33 H 1.09002 * 110.90201 * 278.74351 * 9 8 7 34 34 H 1.08998 * 110.91089 * 155.14780 * 9 8 7 35 35 H 0.96995 * 120.00495 * 0.02562 * 14 12 10 36 36 H 1.08998 * 109.47280 * 300.00100 * 15 14 12 37 37 H 1.08997 * 109.47079 * 60.00502 * 15 14 12 38 38 H 1.08998 * 109.46920 * 300.00021 * 16 15 14 39 39 H 1.08999 * 109.47021 * 59.99389 * 16 15 14 40 40 H 0.97005 * 119.99596 * 179.97438 * 20 19 17 41 41 H 1.07997 * 125.89658 * 179.97438 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6664 0.0006 5 6 4.7680 1.5452 0.0002 6 1 4.5303 2.5119 0.4441 7 8 5.8238 0.9126 0.7428 8 6 7.0657 1.2730 0.0962 9 6 6.7235 1.2031 -1.4139 10 6 5.2721 1.7409 -1.4428 11 1 4.6652 1.1638 -2.1404 12 6 5.2582 3.2017 -1.8129 13 8 4.8826 4.0276 -1.0080 14 7 5.6640 3.5904 -3.0378 15 6 5.6510 5.0106 -3.3973 16 6 6.1549 5.1781 -4.8323 17 6 6.1420 6.6389 -5.2019 18 1 5.8075 7.3744 -4.4852 19 6 6.5573 7.0366 -6.4550 20 7 6.9652 6.1411 -7.3276 21 14 6.5408 8.8475 -6.9135 22 1 7.8463 9.4598 -6.5587 23 1 6.3094 8.9863 -8.3737 24 1 5.4536 9.5358 -6.1723 25 6 3.5346 -0.7322 0.0003 26 7 2.2891 -1.1328 0.0002 27 1 -0.3634 0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5137 29 1 -0.3633 0.8900 0.5139 30 1 1.9281 2.1193 0.0042 31 1 7.8501 0.5583 0.3455 32 1 7.3627 2.2837 0.3761 33 1 6.7649 0.1754 -1.7749 34 1 7.3876 1.8444 -1.9934 35 1 5.9648 2.9300 -3.6814 36 1 4.6338 5.3950 -3.3227 37 1 6.2992 5.5634 -2.7175 38 1 7.1720 4.7936 -4.9074 39 1 5.5064 4.6252 -5.5119 40 1 7.2570 6.4210 -8.2093 41 1 4.4054 -1.3711 0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332356135.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:41 Heat of formation + Delta-G solvation = -35.028355 kcal Electronic energy + Delta-G solvation = -23123.867791 eV Core-core repulsion = 19618.341065 eV Total energy + Delta-G solvation = -3505.526726 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.35547 -41.24390 -39.32713 -36.59702 -34.86287 -34.28949 -33.47482 -32.19415 -31.31352 -29.40130 -27.49281 -26.67058 -24.28587 -23.50204 -22.75425 -21.92232 -21.42860 -20.84759 -18.65878 -18.38061 -18.08784 -17.02654 -16.78059 -16.51342 -16.30031 -16.08668 -15.95813 -15.85178 -15.21710 -14.85163 -14.61220 -14.31137 -14.09283 -13.79633 -13.67464 -13.36067 -13.23563 -12.98934 -12.91431 -12.61904 -12.53323 -12.24151 -12.17522 -12.12916 -11.65863 -11.65244 -11.44850 -10.88305 -10.60884 -10.59765 -10.39278 -10.02359 -9.37852 -8.24103 -6.34377 0.87499 1.42247 1.42308 1.53707 1.59564 1.64449 1.71987 2.21208 2.44233 3.00245 3.10898 3.50094 3.58365 3.77658 3.90329 3.97562 4.12346 4.28696 4.37102 4.37551 4.42882 4.47028 4.51359 4.52376 4.68500 4.71263 4.85211 4.86262 4.88962 5.00591 5.06879 5.17048 5.30315 5.49442 5.58930 5.65402 5.79057 5.90385 6.06794 6.16460 6.60180 6.69614 6.79128 7.24055 7.35102 8.87576 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.021026 B = 0.003041 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.363186 B = 9204.057719 C = 9946.438965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.378 5.378 3 C 0.068 3.932 4 C -0.255 4.255 5 C 0.174 3.826 6 H 0.074 0.926 7 O -0.377 6.377 8 C 0.041 3.959 9 C -0.139 4.139 10 C -0.128 4.128 11 H 0.124 0.876 12 C 0.516 3.484 13 O -0.582 6.582 14 N -0.713 5.713 15 C 0.141 3.859 16 C 0.023 3.977 17 C -0.547 4.547 18 H 0.058 0.942 19 C 0.008 3.992 20 N -0.926 5.926 21 Si 0.963 3.037 22 H -0.272 1.272 23 H -0.281 1.281 24 H -0.266 1.266 25 C 0.069 3.931 26 N -0.330 5.330 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.111 0.889 30 H 0.192 0.808 31 H 0.124 0.876 32 H 0.050 0.950 33 H 0.115 0.885 34 H 0.088 0.912 35 H 0.411 0.589 36 H 0.046 0.954 37 H 0.047 0.953 38 H 0.010 0.990 39 H 0.008 0.992 40 H 0.266 0.734 41 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.020 -14.639 13.460 21.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.160 5.160 3 C -0.080 4.080 4 C -0.267 4.267 5 C 0.114 3.886 6 H 0.091 0.909 7 O -0.296 6.296 8 C -0.035 4.035 9 C -0.176 4.176 10 C -0.150 4.150 11 H 0.142 0.858 12 C 0.304 3.696 13 O -0.463 6.463 14 N -0.364 5.364 15 C 0.017 3.983 16 C -0.014 4.014 17 C -0.585 4.585 18 H 0.077 0.923 19 C -0.191 4.191 20 N -0.566 5.566 21 Si 0.788 3.212 22 H -0.198 1.198 23 H -0.206 1.206 24 H -0.191 1.191 25 C -0.117 4.117 26 N -0.152 5.152 27 H 0.104 0.896 28 H 0.114 0.886 29 H 0.129 0.871 30 H 0.209 0.791 31 H 0.142 0.858 32 H 0.068 0.932 33 H 0.134 0.866 34 H 0.107 0.893 35 H 0.246 0.754 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.028 0.972 39 H 0.026 0.974 40 H 0.074 0.926 41 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -8.239 -15.212 14.029 22.273 hybrid contribution 0.736 1.648 -1.027 2.077 sum -7.503 -13.564 13.002 20.232 Atomic orbital electron populations 1.22209 0.71890 1.06003 1.04645 1.48803 1.07974 1.03156 1.56068 1.22599 0.90658 0.94404 1.00316 1.19956 0.93747 0.94345 1.18665 1.20543 0.85161 0.94009 0.88859 0.90860 1.88907 1.15323 1.72750 1.52664 1.23766 0.87592 1.01228 0.90880 1.23216 0.92324 1.04165 0.97940 1.22678 1.00909 0.91830 0.99580 0.85796 1.20842 0.76013 0.91454 0.81318 1.90636 1.49405 1.55542 1.50692 1.46119 1.65663 1.09574 1.15023 1.21230 0.99716 0.80360 0.96986 1.19127 0.95708 0.96352 0.90263 1.21472 1.44197 0.93587 0.99260 0.92331 1.25852 0.94532 1.02401 0.96319 1.70054 1.44407 1.35460 1.06636 0.85473 0.78851 0.79517 0.77389 1.19785 1.20595 1.19058 1.23940 0.95249 0.94458 0.98028 1.77300 1.02273 1.09443 1.26172 0.89645 0.88650 0.87086 0.79149 0.85829 0.93180 0.86646 0.89320 0.75356 0.93559 0.93432 0.97196 0.97383 0.92556 0.78529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.04 11.47 127.77 1.47 2.50 16 2 N -0.38 -7.81 4.01 -369.55 -1.48 -9.29 16 3 C 0.07 1.47 11.40 83.54 0.95 2.42 16 4 C -0.26 -6.11 4.95 -20.14 -0.10 -6.21 16 5 C 0.17 4.40 3.49 30.22 0.11 4.51 16 6 H 0.07 2.24 6.43 -2.39 -0.02 2.22 16 7 O -0.38 -9.29 10.91 -148.98 -1.63 -10.92 16 8 C 0.04 0.81 7.72 72.67 0.56 1.37 16 9 C -0.14 -2.49 6.70 31.90 0.21 -2.28 16 10 C -0.13 -2.98 3.06 -10.55 -0.03 -3.02 16 11 H 0.12 2.59 7.69 -2.39 -0.02 2.57 16 12 C 0.52 16.26 7.05 87.66 0.62 16.88 16 13 O -0.58 -22.67 15.25 -3.04 -0.05 -22.72 16 14 N -0.71 -23.33 5.40 -463.05 -2.50 -25.84 16 15 C 0.14 5.83 5.61 86.38 0.48 6.31 16 16 C 0.02 1.13 5.09 29.85 0.15 1.28 16 17 C -0.55 -30.00 9.11 25.60 0.23 -29.76 16 18 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 19 C 0.01 0.43 5.46 84.65 0.46 0.89 16 20 N -0.93 -53.52 13.29 21.45 0.28 -53.23 16 21 Si 0.96 42.97 29.54 68.60 2.03 45.00 16 22 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 23 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 24 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 25 C 0.07 1.59 11.63 85.24 0.99 2.58 16 26 N -0.33 -8.16 12.57 -57.02 -0.72 -8.88 16 27 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 28 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.19 3.37 8.06 -2.91 -0.02 3.35 16 31 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.09 1.62 7.74 -2.39 -0.02 1.60 16 35 H 0.41 11.45 8.47 -92.71 -0.79 10.66 16 36 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 40 H 0.27 14.44 8.31 -92.70 -0.77 13.67 16 41 H 0.20 3.69 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -71.69 348.96 2.29 -69.40 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: 0.25 Total: 18.99 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: 6.11 Total: -2.52 kcal Atomic # 7 Polarization: -92.82 SS G_CDS: -4.42 Total: -97.23 kcal Atomic # 8 Polarization: -31.96 SS G_CDS: -1.67 Total: -33.63 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -71.69 2.29 -69.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332356135.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.368 kcal (2) G-P(sol) polarization free energy of solvation -71.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds