Wall clock time and date at job start Tue Mar 31 2020 02:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46502 * 109.47191 * 2 1 4 4 C 1.37092 * 120.00579 * 96.74148 * 3 2 1 5 5 H 1.07996 * 120.00219 * 174.55124 * 4 3 2 6 6 C 1.38956 * 119.99962 * 354.54191 * 4 3 2 7 7 N 1.31411 * 119.99694 * 330.19505 * 6 4 3 8 8 Si 1.86797 * 119.99959 * 150.18841 * 6 4 3 9 9 H 1.48500 * 109.46809 * 94.98824 * 8 6 4 10 10 H 1.48493 * 109.47009 * 214.98829 * 8 6 4 11 11 H 1.48498 * 109.47041 * 334.99059 * 8 6 4 12 12 C 1.34786 * 119.99391 * 276.74098 * 3 2 1 13 13 O 1.21292 * 119.99817 * 6.17744 * 12 3 2 14 14 C 1.50693 * 119.99584 * 186.18047 * 12 3 2 15 15 H 1.08997 * 110.44116 * 35.46489 * 14 12 3 16 16 C 1.54812 * 110.48618 * 272.92085 * 14 12 3 17 17 C 1.54993 * 102.09262 * 262.07226 * 16 14 12 18 18 O 1.44373 * 103.63488 * 322.89720 * 17 16 14 19 19 C 1.44125 * 106.77105 * 40.03395 * 18 17 16 20 20 H 1.09004 * 109.84035 * 92.96775 * 19 18 17 21 21 C 1.50697 * 109.86175 * 214.08309 * 19 18 17 22 22 N 1.30506 * 125.64406 * 42.58078 * 21 19 18 23 23 C 1.34134 * 109.25351 * 179.89084 * 22 21 19 24 24 C 1.34669 * 108.01801 * 0.37493 * 23 22 21 25 25 N 1.35035 * 125.65664 * 222.88654 * 21 19 18 26 26 C 1.46502 * 126.39375 * 359.94536 * 25 21 19 27 27 H 1.08999 * 109.46847 * 67.16835 * 1 2 3 28 28 H 1.09003 * 109.47097 * 187.16590 * 1 2 3 29 29 H 1.09000 * 109.47326 * 307.16422 * 1 2 3 30 30 H 1.08999 * 109.47590 * 239.99047 * 2 1 3 31 31 H 1.09002 * 109.47154 * 119.99225 * 2 1 3 32 32 H 0.97005 * 119.99390 * 179.97438 * 7 6 4 33 33 H 1.08999 * 110.90619 * 143.87495 * 16 14 12 34 34 H 1.08995 * 110.90686 * 20.27267 * 16 14 12 35 35 H 1.08998 * 110.61769 * 81.48072 * 17 16 14 36 36 H 1.09005 * 110.61754 * 204.31450 * 17 16 14 37 37 H 1.07993 * 125.99123 * 180.18481 * 23 22 21 38 38 H 1.08004 * 126.59019 * 179.74568 * 24 23 22 39 39 H 1.09010 * 109.47350 * 90.00090 * 26 25 21 40 40 H 1.08997 * 109.47465 * 209.99566 * 26 25 21 41 41 H 1.08997 * 109.47305 * 329.99975 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3782 1.9811 1.1790 5 1 2.8204 2.9664 1.1706 6 6 2.1740 1.3216 2.3848 7 7 1.1795 0.4715 2.5085 8 14 3.3131 1.6432 3.8299 9 1 2.7193 2.6850 4.7059 10 1 3.4953 0.3897 4.6050 11 1 4.6300 2.1105 3.3276 12 6 2.1137 2.0622 -1.1593 13 8 1.6915 1.5736 -2.1861 14 6 2.7450 3.4304 -1.1796 15 1 3.5673 3.4808 -0.4659 16 6 1.6893 4.5188 -0.8677 17 6 1.3062 5.0154 -2.2851 18 8 2.5557 4.9795 -3.0074 19 6 3.2390 3.7786 -2.5971 20 1 3.0013 2.9651 -3.2827 21 6 4.7268 4.0175 -2.5771 22 7 5.3196 5.0842 -2.1147 23 6 6.6466 4.9494 -2.2568 24 6 6.8845 3.7574 -2.8366 25 7 5.6670 3.1659 -3.0399 26 6 5.4285 1.8536 -3.6460 27 1 -0.3633 0.3988 -0.9472 28 1 -0.3633 -1.0197 0.1282 29 1 -0.3634 0.6208 0.8189 30 1 1.8934 -0.5140 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 1.0372 0.0108 3.3502 33 1 2.1247 5.3252 -0.2775 34 1 0.8260 4.0892 -0.3595 35 1 0.5788 4.3452 -2.7429 36 1 0.9162 6.0324 -2.2431 37 1 7.3931 5.6716 -1.9613 38 1 7.8503 3.3473 -3.0925 39 1 5.3106 1.9671 -4.7237 40 1 6.2754 1.1990 -3.4403 41 1 4.5222 1.4183 -3.2252 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332372128.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:32 Heat of formation + Delta-G solvation = 1.605449 kcal Electronic energy + Delta-G solvation = -25006.124658 eV Core-core repulsion = 21502.186493 eV Total energy + Delta-G solvation = -3503.938165 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 2.59 seconds Orbital eigenvalues (eV) -41.88908 -39.58565 -37.71182 -35.07261 -33.78561 -32.00795 -31.67907 -30.70065 -29.61380 -27.58895 -26.70565 -24.96001 -23.61839 -22.20086 -21.23333 -21.04829 -19.52885 -19.03561 -17.40324 -17.01664 -16.07544 -15.49677 -15.32667 -15.11017 -14.85492 -14.37660 -14.20782 -13.80604 -13.60637 -13.26488 -12.98151 -12.82162 -12.66145 -12.43496 -12.36725 -12.01812 -11.62582 -11.38075 -11.18657 -11.03262 -10.89877 -10.61534 -10.58479 -10.45771 -10.34864 -9.75322 -9.66078 -9.38146 -9.36393 -8.98115 -8.49191 -8.10892 -7.94986 -6.56745 -3.92623 2.20921 2.91334 3.02269 3.16597 3.22040 3.37383 3.69908 3.99662 4.27022 4.62374 4.69434 4.87337 4.89141 5.03201 5.21128 5.28573 5.40861 5.48521 5.52123 5.59725 5.73913 5.82699 5.96840 6.05771 6.13577 6.32935 6.42350 6.49923 6.52044 6.57394 6.65700 6.71738 6.91276 6.97750 7.17077 7.25909 7.30110 7.36291 7.59600 7.65252 8.29490 8.39744 8.95181 9.40756 9.80368 10.44514 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.014711 B = 0.006166 C = 0.005517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.937837 B = 4539.732307 C = 5073.776604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.131 3.869 3 N -0.427 5.427 4 C -0.346 4.346 5 H 0.103 0.897 6 C 0.045 3.955 7 N -0.842 5.842 8 Si 0.904 3.096 9 H -0.277 1.277 10 H -0.281 1.281 11 H -0.268 1.268 12 C 0.452 3.548 13 O -0.612 6.612 14 C -0.110 4.110 15 H 0.102 0.898 16 C -0.129 4.129 17 C 0.050 3.950 18 O -0.360 6.360 19 C 0.175 3.825 20 H 0.100 0.900 21 C 0.216 3.784 22 N -0.471 5.471 23 C -0.033 4.033 24 C -0.064 4.064 25 N -0.452 5.452 26 C 0.067 3.933 27 H 0.031 0.969 28 H 0.036 0.964 29 H 0.078 0.922 30 H 0.036 0.964 31 H 0.094 0.906 32 H 0.270 0.730 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.064 0.936 36 H 0.091 0.909 37 H 0.168 0.832 38 H 0.172 0.828 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.101 2.165 -6.134 8.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.009 3.991 3 N -0.143 5.143 4 C -0.473 4.473 5 H 0.120 0.880 6 C -0.161 4.161 7 N -0.478 5.478 8 Si 0.730 3.270 9 H -0.203 1.203 10 H -0.206 1.206 11 H -0.192 1.192 12 C 0.240 3.760 13 O -0.501 6.501 14 C -0.133 4.133 15 H 0.120 0.880 16 C -0.167 4.167 17 C -0.027 4.027 18 O -0.277 6.277 19 C 0.115 3.885 20 H 0.117 0.883 21 C -0.047 4.047 22 N -0.189 5.189 23 C -0.182 4.182 24 C -0.197 4.197 25 N -0.135 5.135 26 C -0.076 4.076 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.097 0.903 30 H 0.054 0.946 31 H 0.112 0.888 32 H 0.080 0.920 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.082 0.918 36 H 0.109 0.891 37 H 0.185 0.815 38 H 0.190 0.810 39 H 0.095 0.905 40 H 0.104 0.896 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.448 2.439 -6.327 8.698 hybrid contribution 1.055 -0.806 0.810 1.555 sum 6.502 1.633 -5.517 8.682 Atomic orbital electron populations 1.21861 0.96645 1.00240 1.00870 1.21289 0.94633 0.82969 1.00254 1.43825 1.53798 1.11210 1.05473 1.19632 1.40742 1.03902 0.82994 0.87950 1.25129 0.95645 0.96638 0.98723 1.70220 1.23698 1.27419 1.26497 0.86288 0.81552 0.78149 0.81042 1.20258 1.20596 1.19245 1.19567 0.85533 0.86714 0.84185 1.90503 1.55369 1.70689 1.33507 1.22290 0.99797 0.95161 0.96021 0.88011 1.22939 0.98999 0.97364 0.97442 1.23568 0.86694 1.01460 0.90966 1.88930 1.31840 1.41891 1.65077 1.20842 0.82500 0.88598 0.96530 0.88273 1.23076 0.93075 0.87705 1.00858 1.70259 1.05915 1.22231 1.20485 1.22320 0.93319 0.97220 1.05332 1.22635 0.89388 0.97438 1.10240 1.45219 1.06556 1.16281 1.45458 1.22135 1.04577 0.81876 0.98999 0.95023 0.94544 0.90284 0.94573 0.88756 0.91956 0.90072 0.89395 0.91790 0.89086 0.81513 0.81046 0.90491 0.89622 0.88604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 9.58 37.16 0.36 -2.73 16 2 C 0.13 3.07 5.21 -4.04 -0.02 3.05 16 3 N -0.43 -10.28 2.64 -114.81 -0.30 -10.58 16 4 C -0.35 -8.40 9.12 -14.93 -0.14 -8.54 16 5 H 0.10 2.44 6.01 -52.49 -0.32 2.12 16 6 C 0.05 1.08 4.81 -17.47 -0.08 1.00 16 7 N -0.84 -20.43 9.08 55.50 0.50 -19.93 16 8 Si 0.90 18.80 29.64 -169.99 -5.04 13.76 16 9 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 10 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 11 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 12 C 0.45 10.39 6.63 -10.98 -0.07 10.32 16 13 O -0.61 -14.98 15.07 5.55 0.08 -14.89 16 14 C -0.11 -2.25 2.06 -90.25 -0.19 -2.43 16 15 H 0.10 2.20 6.30 -51.93 -0.33 1.88 16 16 C -0.13 -2.37 6.51 -24.72 -0.16 -2.53 16 17 C 0.05 0.84 7.71 38.21 0.29 1.14 16 18 O -0.36 -6.98 11.19 -35.23 -0.39 -7.37 16 19 C 0.18 3.40 3.25 -27.31 -0.09 3.31 16 20 H 0.10 1.98 5.70 -51.93 -0.30 1.69 16 21 C 0.22 4.05 6.59 -155.42 -1.02 3.02 16 22 N -0.47 -9.07 11.24 -10.82 -0.12 -9.20 16 23 C -0.03 -0.52 11.87 -17.81 -0.21 -0.73 16 24 C -0.06 -0.89 11.58 -16.56 -0.19 -1.08 16 25 N -0.45 -7.10 3.15 -121.28 -0.38 -7.48 16 26 C 0.07 0.82 10.76 59.85 0.64 1.47 16 27 H 0.03 0.71 7.94 -51.93 -0.41 0.30 16 28 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.08 1.91 6.81 -51.93 -0.35 1.56 16 30 H 0.04 0.82 7.73 -51.93 -0.40 0.42 16 31 H 0.09 2.28 5.75 -51.93 -0.30 1.98 16 32 H 0.27 6.22 8.31 -40.82 -0.34 5.88 16 33 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.09 1.68 7.85 -51.93 -0.41 1.28 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.17 2.07 8.06 -52.49 -0.42 1.65 16 38 H 0.17 1.67 8.06 -52.48 -0.42 1.25 16 39 H 0.08 0.80 8.14 -51.92 -0.42 0.38 16 40 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.10 1.37 7.36 -51.93 -0.38 0.98 16 LS Contribution 333.74 15.07 5.03 5.03 Total: -1.00 -29.62 333.74 -7.22 -36.84 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -5.71 Total: 8.56 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: -0.88 Total: 5.26 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: -0.30 Total: -47.18 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.31 Total: -22.27 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.04 Total: 13.76 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.62 -7.22 -36.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332372128.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.445 kcal (2) G-P(sol) polarization free energy of solvation -29.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.59 seconds