Wall clock time and date at job start Tue Mar 31 2020 02:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46501 * 109.46852 * 2 1 4 4 C 1.37097 * 120.00378 * 266.49451 * 3 2 1 5 5 H 1.07997 * 119.99784 * 142.60920 * 4 3 2 6 6 C 1.38946 * 119.99692 * 322.33608 * 4 3 2 7 7 N 1.31410 * 120.00105 * 160.62293 * 6 4 3 8 8 Si 1.86804 * 120.00301 * 340.62552 * 6 4 3 9 9 H 1.48501 * 109.46983 * 95.35272 * 8 6 4 10 10 H 1.48499 * 109.47058 * 215.35547 * 8 6 4 11 11 H 1.48499 * 109.47086 * 335.35789 * 8 6 4 12 12 C 1.34775 * 119.99837 * 86.50145 * 3 2 1 13 13 O 1.21293 * 120.00476 * 173.97168 * 12 3 2 14 14 C 1.50705 * 120.00159 * 353.97255 * 12 3 2 15 15 H 1.09005 * 110.43074 * 319.95113 * 14 12 3 16 16 C 1.54798 * 110.49010 * 82.50171 * 14 12 3 17 17 C 1.55349 * 101.93397 * 97.82674 * 16 14 12 18 18 O 1.44377 * 103.50187 * 37.05347 * 17 16 14 19 19 C 1.43748 * 106.97360 * 319.90774 * 18 17 16 20 20 H 1.08995 * 110.00742 * 267.02234 * 19 18 17 21 21 C 1.50701 * 109.87872 * 145.93780 * 19 18 17 22 22 C 1.39871 * 126.04018 * 326.86042 * 21 19 18 23 23 N 1.30836 * 108.20398 * 179.81492 * 22 21 19 24 24 N 1.40088 * 108.20307 * 0.44156 * 23 22 21 25 25 C 1.46496 * 126.03762 * 179.73789 * 24 23 22 26 26 C 1.34941 * 107.92467 * 359.71521 * 24 23 22 27 27 H 1.09006 * 109.46616 * 305.32078 * 1 2 3 28 28 H 1.08996 * 109.46978 * 65.31864 * 1 2 3 29 29 H 1.08992 * 109.46998 * 185.32257 * 1 2 3 30 30 H 1.08994 * 109.46727 * 240.00423 * 2 1 3 31 31 H 1.08997 * 109.46768 * 119.99809 * 2 1 3 32 32 H 0.97001 * 120.00720 * 180.02562 * 7 6 4 33 33 H 1.08999 * 110.90722 * 215.99580 * 16 14 12 34 34 H 1.09003 * 110.91170 * 339.59634 * 16 14 12 35 35 H 1.08997 * 110.63796 * 278.53628 * 17 16 14 36 36 H 1.08998 * 110.58376 * 155.54468 * 17 16 14 37 37 H 1.08001 * 125.89843 * 0.02562 * 22 21 19 38 38 H 1.08998 * 109.46840 * 269.97847 * 25 24 23 39 39 H 1.09006 * 109.47224 * 29.97135 * 25 24 23 40 40 H 1.09000 * 109.47664 * 149.97287 * 25 24 23 41 41 H 1.08006 * 126.12972 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3153 2.0034 -1.1850 5 1 2.0908 3.0517 -1.3156 6 6 2.9102 1.2866 -2.2160 7 7 2.8534 1.7386 -3.4486 8 14 3.7907 -0.3197 -1.8499 9 1 2.8633 -1.4563 -2.0809 10 1 4.9692 -0.4530 -2.7435 11 1 4.2394 -0.3269 -0.4344 12 6 2.1758 2.0403 1.1650 13 8 2.6820 3.1425 1.1748 14 6 1.7229 1.4078 2.4558 15 1 0.7742 0.8902 2.3135 16 6 2.7992 0.4304 2.9871 17 6 3.5401 1.3067 4.0342 18 8 2.4822 2.0899 4.6275 19 6 1.5956 2.4725 3.5626 20 1 1.8816 3.4491 3.1720 21 6 0.1769 2.5186 4.0686 22 6 -0.3728 1.6915 5.0536 23 7 -1.6240 2.0342 5.2236 24 7 -1.9133 3.0851 4.3436 25 6 -3.2048 3.7625 4.2051 26 6 -0.7920 3.3636 3.6464 27 1 -0.3633 0.5942 0.8386 28 1 -0.3633 0.4291 -0.9338 29 1 -0.3633 -1.0232 0.0953 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.2684 1.2381 -4.1684 33 1 2.3378 -0.4363 3.4606 34 1 3.4735 0.1223 2.1880 35 1 4.2695 1.9536 3.5467 36 1 4.0220 0.6810 4.7855 37 1 0.1469 0.9078 5.5848 38 1 -3.8040 3.2517 3.4513 39 1 -3.7295 3.7433 5.1604 40 1 -3.0422 4.7964 3.9006 41 1 -0.6868 4.1243 2.8869 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332375983.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:26 Heat of formation + Delta-G solvation = 19.099949 kcal Electronic energy + Delta-G solvation = -24716.643709 eV Core-core repulsion = 21213.464162 eV Total energy + Delta-G solvation = -3503.179547 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 2.24 seconds Orbital eigenvalues (eV) -41.22594 -39.75960 -37.81165 -35.22690 -33.33165 -32.56498 -31.64227 -30.99834 -29.76370 -28.31647 -26.46916 -25.08630 -23.13015 -22.68034 -21.79038 -20.85375 -20.08364 -18.78039 -17.21196 -16.93189 -16.19144 -15.97427 -15.38689 -15.33618 -15.07667 -14.70654 -14.23737 -13.96626 -13.47566 -13.38210 -13.15266 -12.85774 -12.75679 -12.66445 -12.46242 -12.33577 -12.21476 -11.69702 -11.54528 -11.28001 -11.07798 -10.89862 -10.79919 -10.69996 -10.42956 -10.13384 -9.83859 -9.41602 -9.34100 -9.10462 -8.59155 -8.19136 -7.80084 -6.41774 -4.00300 1.93951 2.55131 2.85870 2.99250 3.17919 3.20904 3.62887 4.08325 4.13389 4.39119 4.57150 4.85290 4.97609 5.01376 5.03238 5.06327 5.20869 5.26745 5.28063 5.45420 5.47600 5.59600 5.65728 5.73845 5.77536 5.86819 5.93270 5.93790 6.06945 6.13268 6.21840 6.30771 6.38246 6.45901 6.71262 6.74176 7.01687 7.18100 7.52513 7.76312 8.24087 8.47942 8.92732 9.28136 9.73722 10.70296 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.019154 B = 0.005350 C = 0.004797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.481650 B = 5232.365291 C = 5836.153962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.085 3.915 3 N -0.462 5.462 4 C -0.311 4.311 5 H 0.105 0.895 6 C 0.059 3.941 7 N -0.866 5.866 8 Si 0.879 3.121 9 H -0.275 1.275 10 H -0.288 1.288 11 H -0.264 1.264 12 C 0.473 3.527 13 O -0.562 6.562 14 C -0.135 4.135 15 H 0.099 0.901 16 C -0.144 4.144 17 C 0.050 3.950 18 O -0.370 6.370 19 C 0.168 3.832 20 H 0.096 0.904 21 C -0.231 4.231 22 C 0.071 3.929 23 N -0.307 5.307 24 N -0.380 5.380 25 C 0.104 3.896 26 C 0.068 3.932 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.274 0.726 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.090 0.910 37 H 0.182 0.818 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.397 -3.118 13.148 15.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.039 4.039 3 N -0.183 5.183 4 C -0.439 4.439 5 H 0.122 0.878 6 C -0.146 4.146 7 N -0.502 5.502 8 Si 0.707 3.293 9 H -0.203 1.203 10 H -0.215 1.215 11 H -0.189 1.189 12 C 0.261 3.739 13 O -0.444 6.444 14 C -0.157 4.157 15 H 0.117 0.883 16 C -0.182 4.182 17 C -0.026 4.026 18 O -0.289 6.289 19 C 0.109 3.891 20 H 0.114 0.886 21 C -0.243 4.243 22 C -0.115 4.115 23 N -0.128 5.128 24 N -0.162 5.162 25 C -0.038 4.038 26 C -0.078 4.078 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.084 0.916 36 H 0.108 0.892 37 H 0.199 0.801 38 H 0.092 0.908 39 H 0.105 0.895 40 H 0.105 0.895 41 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -8.362 -2.659 13.762 16.322 hybrid contribution 1.170 -0.909 -0.889 1.728 sum -7.192 -3.568 12.873 15.171 Atomic orbital electron populations 1.22138 0.96305 1.00821 1.02780 1.21852 0.94748 0.85929 1.01363 1.43732 1.57471 1.11488 1.05654 1.19052 1.39496 0.97926 0.87380 0.87792 1.25371 0.96045 0.98354 0.94861 1.69720 1.41567 1.39922 0.99038 0.86931 0.79840 0.83257 0.79259 1.20267 1.21475 1.18882 1.19929 0.82476 0.87475 0.84048 1.90542 1.46540 1.21283 1.86022 1.22732 1.00594 0.97242 0.95171 0.88300 1.23163 0.97635 0.98090 0.99325 1.23567 0.90769 0.92924 0.95370 1.88803 1.37044 1.71869 1.31176 1.20771 0.84899 0.98669 0.84742 0.88600 1.19996 0.96625 1.02499 1.05142 1.23670 0.91059 0.99428 0.97330 1.77314 1.16970 1.04326 1.14178 1.48406 1.09782 1.28069 1.29956 1.21817 0.81616 0.96641 1.03687 1.22276 0.86453 1.00725 0.98377 0.92834 0.91526 0.92765 0.91096 0.91929 0.91596 0.90082 0.89926 0.91637 0.89167 0.80060 0.90844 0.89502 0.89517 0.80690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 10.00 37.16 0.37 -2.36 16 2 C 0.08 1.66 4.43 -4.04 -0.02 1.64 16 3 N -0.46 -10.84 2.19 -114.81 -0.25 -11.09 16 4 C -0.31 -8.61 9.36 -14.93 -0.14 -8.75 16 5 H 0.10 3.23 7.97 -52.49 -0.42 2.81 16 6 C 0.06 1.61 5.34 -17.47 -0.09 1.52 16 7 N -0.87 -24.72 13.96 55.50 0.77 -23.94 16 8 Si 0.88 20.28 24.83 -169.99 -4.22 16.06 16 9 H -0.28 -5.92 6.71 56.52 0.38 -5.54 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.26 -5.96 7.11 56.52 0.40 -5.55 16 12 C 0.47 10.59 6.70 -10.98 -0.07 10.52 16 13 O -0.56 -14.61 15.33 5.55 0.09 -14.53 16 14 C -0.14 -2.35 2.11 -90.25 -0.19 -2.54 16 15 H 0.10 1.62 5.31 -51.93 -0.28 1.35 16 16 C -0.14 -2.15 5.62 -24.54 -0.14 -2.28 16 17 C 0.05 0.73 7.73 38.40 0.30 1.03 16 18 O -0.37 -6.04 10.89 -35.23 -0.38 -6.42 16 19 C 0.17 2.85 3.46 -27.31 -0.09 2.76 16 20 H 0.10 1.86 6.58 -51.93 -0.34 1.52 16 21 C -0.23 -3.56 4.95 -105.05 -0.52 -4.08 16 22 C 0.07 1.04 11.62 -17.36 -0.20 0.84 16 23 N -0.31 -4.55 12.58 30.62 0.39 -4.17 16 24 N -0.38 -4.95 4.01 -68.16 -0.27 -5.23 16 25 C 0.10 0.86 11.47 59.84 0.69 1.54 16 26 C 0.07 0.95 11.40 -17.23 -0.20 0.75 16 27 H 0.05 0.87 6.49 -51.93 -0.34 0.53 16 28 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 1.48 3.23 -51.93 -0.17 1.32 16 31 H 0.06 1.06 5.75 -51.93 -0.30 0.76 16 32 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 33 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.08 1.33 7.41 -51.93 -0.38 0.94 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.18 2.27 8.06 -52.49 -0.42 1.85 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.18 2.14 8.06 -52.48 -0.42 1.72 16 LS Contribution 331.22 15.07 4.99 4.99 Total: -1.00 -33.29 331.22 -4.81 -38.10 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -5.61 Total: 5.63 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: -0.31 Total: 0.60 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: 0.63 Total: -44.42 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: -0.30 Total: -20.95 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -4.22 Total: 16.06 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.29 -4.81 -38.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332375983.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.202 kcal (2) G-P(sol) polarization free energy of solvation -33.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.24 seconds