Wall clock time and date at job start Tue Mar 31 2020 03:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46499 * 120.00146 * 2 1 4 4 C 1.50701 * 109.46682 * 269.99638 * 3 2 1 5 5 H 1.08002 * 120.00226 * 359.97438 * 4 3 2 6 6 C 1.37884 * 119.99820 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99890 * 180.02562 * 6 4 3 8 8 Si 1.86794 * 120.00073 * 359.97438 * 6 4 3 9 9 H 1.48503 * 109.47113 * 90.00286 * 8 6 4 10 10 H 1.48496 * 109.47387 * 209.99925 * 8 6 4 11 11 H 1.48500 * 109.47236 * 330.00195 * 8 6 4 12 12 C 1.34779 * 119.99961 * 179.97438 * 2 1 3 13 13 O 1.21284 * 120.00184 * 180.02562 * 12 2 1 14 14 C 1.50699 * 120.00032 * 0.02562 * 12 2 1 15 15 H 1.09002 * 110.43730 * 59.29624 * 14 12 2 16 16 C 1.54816 * 110.59947 * 296.67187 * 14 12 2 17 17 C 1.54985 * 102.09264 * 262.15035 * 16 14 12 18 18 O 1.44381 * 103.49481 * 322.97373 * 17 16 14 19 19 C 1.43748 * 106.97039 * 40.06333 * 18 17 16 20 20 H 1.08999 * 110.00435 * 92.98443 * 19 18 17 21 21 C 1.50700 * 109.87753 * 214.06495 * 19 18 17 22 22 C 1.35318 * 126.12431 * 202.85852 * 21 19 18 23 23 C 1.39880 * 107.91618 * 179.97438 * 22 21 19 24 24 N 1.30835 * 108.20241 * 359.97438 * 23 22 21 25 25 N 1.34950 * 126.12791 * 22.54174 * 21 19 18 26 26 C 1.46496 * 126.03400 * 0.03920 * 25 21 19 27 27 H 1.08997 * 109.47429 * 270.00755 * 1 2 3 28 28 H 1.09006 * 109.46956 * 30.00544 * 1 2 3 29 29 H 1.08997 * 109.47189 * 150.00465 * 1 2 3 30 30 H 1.08992 * 109.47473 * 29.99226 * 3 2 1 31 31 H 1.09004 * 109.47503 * 150.00267 * 3 2 1 32 32 H 0.96995 * 119.99830 * 179.97438 * 7 6 4 33 33 H 1.09006 * 110.90483 * 20.34819 * 16 14 12 34 34 H 1.09000 * 110.90867 * 143.94811 * 16 14 12 35 35 H 1.09004 * 110.61812 * 204.47726 * 17 16 14 36 36 H 1.09004 * 110.75715 * 81.54333 * 17 16 14 37 37 H 1.08000 * 126.04338 * 359.97438 * 22 21 19 38 38 H 1.07998 * 125.89084 * 180.02562 * 23 22 21 39 39 H 1.09004 * 109.47041 * 90.00387 * 26 25 21 40 40 H 1.09001 * 109.46766 * 209.99678 * 26 25 21 41 41 H 1.08994 * 109.47729 * 329.99717 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7036 -1.4209 5 1 2.0982 1.0955 -2.2417 6 6 3.1261 2.8778 -1.6729 7 7 3.3449 3.2576 -2.9128 8 14 3.7318 3.9299 -0.2532 9 1 5.1051 3.5092 0.1239 10 1 3.7467 5.3564 -0.6653 11 1 2.8250 3.7603 0.9106 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1673 0.0010 14 6 1.3854 -2.4723 0.0005 15 1 0.7437 -2.5414 -0.8779 16 6 0.5492 -2.6185 1.2952 17 6 1.4668 -3.5039 2.1762 18 8 2.0609 -4.4189 1.2304 19 6 2.3652 -3.6608 0.0476 20 1 3.3906 -3.2942 0.0932 21 6 2.1834 -4.5234 -1.1747 22 6 2.7635 -4.3291 -2.3817 23 6 2.3332 -5.3503 -3.2353 24 7 1.5244 -6.1299 -2.5647 25 7 1.4176 -5.6313 -1.2599 26 6 0.6142 -6.2088 -0.1796 27 1 -0.3634 0.0001 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8900 -0.5137 30 1 1.6085 2.0284 0.5137 31 1 3.1500 1.1384 0.5138 32 1 3.8211 4.0838 -3.0901 33 1 0.3813 -1.6476 1.7615 34 1 -0.3972 -3.1199 1.0925 35 1 0.8800 -4.0459 2.9178 36 1 2.2346 -2.9014 2.6616 37 1 3.4393 -3.5273 -2.6402 38 1 2.6200 -5.4742 -4.2691 39 1 -0.3862 -5.7763 -0.1996 40 1 0.5460 -7.2882 -0.3147 41 1 1.0848 -5.9917 0.7792 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332394971.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:45 Heat of formation + Delta-G solvation = 14.955558 kcal Electronic energy + Delta-G solvation = -24475.185673 eV Core-core repulsion = 20971.826412 eV Total energy + Delta-G solvation = -3503.359261 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.44058 -40.07864 -38.20276 -35.14348 -33.15725 -32.92522 -32.22455 -31.40044 -28.68877 -27.92571 -26.62591 -26.11038 -23.89986 -22.72626 -21.70963 -20.91413 -19.96305 -18.77022 -17.27534 -16.97254 -16.72659 -16.00993 -15.62758 -15.27689 -15.15061 -14.95314 -14.68421 -14.04734 -13.81846 -13.47296 -13.33332 -13.01843 -12.81030 -12.62118 -12.48629 -12.25320 -12.14819 -11.88667 -11.61837 -11.60974 -11.39194 -11.19923 -10.95566 -10.65749 -10.56977 -10.20914 -9.86322 -9.60154 -9.30367 -9.05146 -8.63358 -8.39560 -7.84415 -6.12801 -4.12394 1.86979 2.61056 2.90550 3.10915 3.25301 3.31002 3.32960 3.47224 3.73198 4.30944 4.35199 4.45630 4.64332 4.71159 4.76817 4.99346 5.11938 5.18769 5.21386 5.27649 5.32858 5.42031 5.51651 5.57174 5.64840 5.68242 5.73622 5.75063 5.91028 5.92901 6.08307 6.22498 6.54756 6.63096 6.77013 6.84795 7.06252 7.19885 7.54617 7.79134 8.08343 8.40608 8.77187 8.90944 9.46616 11.00494 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.020756 B = 0.004594 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.700779 B = 6093.260352 C = 6825.816530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.592 5.592 3 C 0.215 3.785 4 C -0.531 4.531 5 H 0.075 0.925 6 C 0.073 3.927 7 N -0.895 5.895 8 Si 0.876 3.124 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.266 1.266 12 C 0.517 3.483 13 O -0.533 6.533 14 C -0.134 4.134 15 H 0.110 0.890 16 C -0.148 4.148 17 C 0.046 3.954 18 O -0.372 6.372 19 C 0.152 3.848 20 H 0.124 0.876 21 C 0.088 3.912 22 C -0.260 4.260 23 C 0.046 3.954 24 N -0.305 5.305 25 N -0.360 5.360 26 C 0.092 3.908 27 H 0.048 0.952 28 H 0.078 0.922 29 H 0.060 0.940 30 H 0.031 0.969 31 H 0.038 0.962 32 H 0.265 0.735 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.069 0.931 37 H 0.152 0.848 38 H 0.184 0.816 39 H 0.065 0.935 40 H 0.079 0.921 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.424 -14.738 9.358 19.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.323 5.323 3 C 0.095 3.905 4 C -0.570 4.570 5 H 0.093 0.907 6 C -0.129 4.129 7 N -0.534 5.534 8 Si 0.703 3.297 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.191 1.191 12 C 0.303 3.697 13 O -0.410 6.410 14 C -0.157 4.157 15 H 0.128 0.872 16 C -0.186 4.186 17 C -0.030 4.030 18 O -0.291 6.291 19 C 0.093 3.907 20 H 0.141 0.859 21 C -0.040 4.040 22 C -0.289 4.289 23 C -0.139 4.139 24 N -0.127 5.127 25 N -0.142 5.142 26 C -0.049 4.049 27 H 0.066 0.934 28 H 0.096 0.904 29 H 0.079 0.921 30 H 0.049 0.951 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.112 0.888 34 H 0.104 0.896 35 H 0.116 0.884 36 H 0.087 0.913 37 H 0.170 0.830 38 H 0.201 0.799 39 H 0.084 0.916 40 H 0.098 0.902 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.493 -15.892 9.346 20.299 hybrid contribution 0.623 1.674 0.350 1.820 sum -7.870 -14.218 9.696 18.924 Atomic orbital electron populations 1.21770 0.80928 1.03201 1.00416 1.47765 1.06290 1.06959 1.71268 1.19709 0.92435 0.79778 0.98567 1.21303 1.37265 1.07256 0.91153 0.90715 1.24856 0.95179 0.97319 0.95565 1.69893 1.41280 1.23521 1.18658 0.86856 0.80138 0.79844 0.82864 1.19848 1.21025 1.19121 1.19850 0.87817 0.84672 0.77358 1.90667 1.13616 1.86607 1.50160 1.22641 0.97835 0.94130 1.01053 0.87219 1.23261 0.98854 1.02133 0.94330 1.23624 0.95545 0.91692 0.92168 1.88749 1.81974 1.33273 1.25147 1.21331 1.01345 0.87122 0.80940 0.85908 1.20893 0.95863 0.90579 0.96670 1.21318 1.09896 1.04962 0.92718 1.23797 0.96262 0.93529 1.00285 1.77300 1.22660 1.23241 0.89450 1.48406 1.36421 1.20228 1.09185 1.22197 0.94763 0.99285 0.88692 0.93390 0.90363 0.92149 0.95113 0.94442 0.92491 0.88800 0.89612 0.88358 0.91263 0.82981 0.79926 0.91636 0.90246 0.86864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.14 9.06 59.85 0.54 1.68 16 2 N -0.59 -11.39 2.83 -182.96 -0.52 -11.91 16 3 C 0.22 5.05 4.23 -5.19 -0.02 5.03 16 4 C -0.53 -14.89 9.94 -34.44 -0.34 -15.24 16 5 H 0.07 2.31 8.06 -52.49 -0.42 1.89 16 6 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 7 N -0.90 -27.23 13.96 55.43 0.77 -26.45 16 8 Si 0.88 21.07 27.47 -169.99 -4.67 16.40 16 9 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.27 -5.98 6.54 56.52 0.37 -5.61 16 12 C 0.52 9.79 7.01 -10.99 -0.08 9.71 16 13 O -0.53 -12.25 14.84 5.55 0.08 -12.16 16 14 C -0.13 -1.88 2.12 -90.24 -0.19 -2.07 16 15 H 0.11 1.53 6.95 -51.93 -0.36 1.17 16 16 C -0.15 -1.47 5.81 -24.73 -0.14 -1.62 16 17 C 0.05 0.45 7.72 38.21 0.29 0.74 16 18 O -0.37 -4.58 7.88 -35.23 -0.28 -4.85 16 19 C 0.15 2.20 3.48 -27.31 -0.10 2.10 16 20 H 0.12 2.08 6.44 -51.93 -0.33 1.75 16 21 C 0.09 1.33 5.84 -82.26 -0.48 0.85 16 22 C -0.26 -4.01 10.72 -40.01 -0.43 -4.44 16 23 C 0.05 0.65 12.03 -17.36 -0.21 0.45 16 24 N -0.30 -4.65 12.58 30.63 0.39 -4.26 16 25 N -0.36 -5.10 4.01 -63.89 -0.26 -5.36 16 26 C 0.09 0.94 11.06 59.84 0.66 1.60 16 27 H 0.05 0.53 7.09 -51.93 -0.37 0.16 16 28 H 0.08 1.17 8.07 -51.93 -0.42 0.75 16 29 H 0.06 0.73 6.25 -51.93 -0.32 0.40 16 30 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 31 H 0.04 0.94 6.85 -51.93 -0.36 0.58 16 32 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 33 H 0.09 0.92 5.91 -51.93 -0.31 0.61 16 34 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.15 2.37 8.06 -52.49 -0.42 1.95 16 38 H 0.18 1.96 8.06 -52.49 -0.42 1.54 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.11 1.11 5.18 -51.93 -0.27 0.84 16 LS Contribution 331.84 15.07 5.00 5.00 Total: -1.00 -34.82 331.84 -5.72 -40.55 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -5.66 Total: 2.25 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -0.59 Total: 0.80 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: 0.38 Total: -47.98 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -0.20 Total: -17.02 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.67 Total: 16.40 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.82 -5.72 -40.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332394971.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.503 kcal (2) G-P(sol) polarization free energy of solvation -34.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds