Wall clock time and date at job start Tue Mar 31 2020 03:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46499 * 120.00146 * 2 1 4 4 C 1.50701 * 109.46682 * 269.99638 * 3 2 1 5 5 H 1.08002 * 120.00226 * 359.97438 * 4 3 2 6 6 C 1.37884 * 119.99820 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99890 * 180.02562 * 6 4 3 8 8 Si 1.86794 * 120.00073 * 359.97438 * 6 4 3 9 9 H 1.48503 * 109.47113 * 90.00286 * 8 6 4 10 10 H 1.48496 * 109.47387 * 209.99925 * 8 6 4 11 11 H 1.48500 * 109.47236 * 330.00195 * 8 6 4 12 12 C 1.34779 * 119.99961 * 179.97438 * 2 1 3 13 13 O 1.21284 * 120.00184 * 180.02562 * 12 2 1 14 14 C 1.50699 * 120.00032 * 0.02562 * 12 2 1 15 15 H 1.09002 * 110.43730 * 59.29624 * 14 12 2 16 16 C 1.54816 * 110.59947 * 296.67187 * 14 12 2 17 17 C 1.54985 * 102.09264 * 262.15035 * 16 14 12 18 18 O 1.44381 * 103.49481 * 322.97373 * 17 16 14 19 19 C 1.43748 * 106.97039 * 40.06333 * 18 17 16 20 20 H 1.08999 * 110.00435 * 92.98443 * 19 18 17 21 21 C 1.50700 * 109.87753 * 214.06495 * 19 18 17 22 22 C 1.35318 * 126.12431 * 202.85852 * 21 19 18 23 23 C 1.39880 * 107.91618 * 179.97438 * 22 21 19 24 24 N 1.30835 * 108.20241 * 359.97438 * 23 22 21 25 25 N 1.34950 * 126.12791 * 22.54174 * 21 19 18 26 26 C 1.46496 * 126.03400 * 0.03920 * 25 21 19 27 27 H 1.08997 * 109.47429 * 270.00755 * 1 2 3 28 28 H 1.09006 * 109.46956 * 30.00544 * 1 2 3 29 29 H 1.08997 * 109.47189 * 150.00465 * 1 2 3 30 30 H 1.08992 * 109.47473 * 29.99226 * 3 2 1 31 31 H 1.09004 * 109.47503 * 150.00267 * 3 2 1 32 32 H 0.96995 * 119.99830 * 179.97438 * 7 6 4 33 33 H 1.09006 * 110.90483 * 20.34819 * 16 14 12 34 34 H 1.09000 * 110.90867 * 143.94811 * 16 14 12 35 35 H 1.09004 * 110.61812 * 204.47726 * 17 16 14 36 36 H 1.09004 * 110.75715 * 81.54333 * 17 16 14 37 37 H 1.08000 * 126.04338 * 359.97438 * 22 21 19 38 38 H 1.07998 * 125.89084 * 180.02562 * 23 22 21 39 39 H 1.09004 * 109.47041 * 90.00387 * 26 25 21 40 40 H 1.09001 * 109.46766 * 209.99678 * 26 25 21 41 41 H 1.08994 * 109.47729 * 329.99717 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7036 -1.4209 5 1 2.0982 1.0955 -2.2417 6 6 3.1261 2.8778 -1.6729 7 7 3.3449 3.2576 -2.9128 8 14 3.7318 3.9299 -0.2532 9 1 5.1051 3.5092 0.1239 10 1 3.7467 5.3564 -0.6653 11 1 2.8250 3.7603 0.9106 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1673 0.0010 14 6 1.3854 -2.4723 0.0005 15 1 0.7437 -2.5414 -0.8779 16 6 0.5492 -2.6185 1.2952 17 6 1.4668 -3.5039 2.1762 18 8 2.0609 -4.4189 1.2304 19 6 2.3652 -3.6608 0.0476 20 1 3.3906 -3.2942 0.0932 21 6 2.1834 -4.5234 -1.1747 22 6 2.7635 -4.3291 -2.3817 23 6 2.3332 -5.3503 -3.2353 24 7 1.5244 -6.1299 -2.5647 25 7 1.4176 -5.6313 -1.2599 26 6 0.6142 -6.2088 -0.1796 27 1 -0.3634 0.0001 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8900 -0.5137 30 1 1.6085 2.0284 0.5137 31 1 3.1500 1.1384 0.5138 32 1 3.8211 4.0838 -3.0901 33 1 0.3813 -1.6476 1.7615 34 1 -0.3972 -3.1199 1.0925 35 1 0.8800 -4.0459 2.9178 36 1 2.2346 -2.9014 2.6616 37 1 3.4393 -3.5273 -2.6402 38 1 2.6200 -5.4742 -4.2691 39 1 -0.3862 -5.7763 -0.1996 40 1 0.5460 -7.2882 -0.3147 41 1 1.0848 -5.9917 0.7792 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332394971.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:44 Heat of formation + Delta-G solvation = -10.285756 kcal Electronic energy + Delta-G solvation = -24476.280219 eV Core-core repulsion = 20971.826412 eV Total energy + Delta-G solvation = -3504.453806 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.55551 -41.31852 -39.45701 -36.74856 -34.83091 -34.09483 -33.61409 -32.45229 -30.40073 -29.07600 -27.58751 -27.43520 -25.43454 -23.80765 -23.10770 -22.00037 -21.07157 -20.16561 -19.14811 -18.37011 -17.93085 -17.44050 -16.72708 -16.52972 -16.27176 -16.20391 -16.02863 -15.51672 -15.01166 -14.77052 -14.52684 -14.42275 -14.12819 -13.85628 -13.67376 -13.53258 -13.41712 -13.19145 -12.88363 -12.85337 -12.63742 -12.45583 -12.28290 -12.14458 -12.01023 -11.76135 -11.74421 -10.90271 -10.83027 -10.67122 -10.22309 -9.54609 -9.44933 -8.33676 -6.39406 0.73453 1.33427 1.37884 1.45791 1.60786 1.66813 1.75429 2.17680 2.31349 2.63553 3.01002 3.28617 3.37165 3.54672 3.72614 3.85125 3.93560 4.27199 4.27612 4.38909 4.39529 4.48799 4.58111 4.62904 4.71207 4.72967 4.76863 4.78608 4.83482 4.92239 4.96688 5.00541 5.01706 5.12652 5.45081 5.55417 5.63467 5.65662 6.02296 6.22195 6.60531 6.63040 6.67210 7.19022 7.33059 8.83403 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.020756 B = 0.004594 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.700779 B = 6093.260352 C = 6825.816530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.600 5.600 3 C 0.223 3.777 4 C -0.538 4.538 5 H 0.026 0.974 6 C 0.011 3.989 7 N -0.946 5.946 8 Si 0.949 3.051 9 H -0.277 1.277 10 H -0.277 1.277 11 H -0.234 1.234 12 C 0.509 3.491 13 O -0.586 6.586 14 C -0.123 4.123 15 H 0.113 0.887 16 C -0.137 4.137 17 C 0.041 3.959 18 O -0.371 6.371 19 C 0.160 3.840 20 H 0.089 0.911 21 C 0.085 3.915 22 C -0.289 4.289 23 C 0.047 3.953 24 N -0.322 5.322 25 N -0.357 5.357 26 C 0.083 3.917 27 H 0.091 0.909 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.055 0.945 31 H 0.021 0.979 32 H 0.268 0.732 33 H 0.102 0.898 34 H 0.122 0.878 35 H 0.141 0.859 36 H 0.055 0.945 37 H 0.137 0.863 38 H 0.210 0.790 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.841 -15.542 12.205 22.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.330 5.330 3 C 0.101 3.899 4 C -0.576 4.576 5 H 0.044 0.956 6 C -0.187 4.187 7 N -0.586 5.586 8 Si 0.771 3.229 9 H -0.203 1.203 10 H -0.202 1.202 11 H -0.157 1.157 12 C 0.297 3.703 13 O -0.467 6.467 14 C -0.145 4.145 15 H 0.131 0.869 16 C -0.174 4.174 17 C -0.035 4.035 18 O -0.290 6.290 19 C 0.099 3.901 20 H 0.107 0.893 21 C -0.045 4.045 22 C -0.319 4.319 23 C -0.138 4.138 24 N -0.144 5.144 25 N -0.140 5.140 26 C -0.056 4.056 27 H 0.109 0.891 28 H 0.084 0.916 29 H 0.101 0.899 30 H 0.073 0.927 31 H 0.039 0.961 32 H 0.077 0.923 33 H 0.120 0.880 34 H 0.140 0.860 35 H 0.159 0.841 36 H 0.074 0.926 37 H 0.155 0.845 38 H 0.227 0.773 39 H 0.106 0.894 40 H 0.109 0.891 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.983 -16.730 12.218 23.448 hybrid contribution 1.365 1.848 -0.588 2.372 sum -9.618 -14.881 11.630 21.195 Atomic orbital electron populations 1.22102 0.77585 1.03823 1.03334 1.47848 1.08425 1.05690 1.71015 1.19379 0.92881 0.82363 0.95279 1.21560 1.36908 1.06718 0.92450 0.95564 1.25874 0.95262 0.98981 0.98618 1.70057 1.42685 1.24457 1.21417 0.85707 0.79610 0.77663 0.79909 1.20260 1.20197 1.15671 1.20724 0.87536 0.86141 0.75872 1.90640 1.16177 1.87561 1.52303 1.22543 0.97606 0.90629 1.03694 0.86900 1.23365 0.99448 1.03124 0.91498 1.23891 0.95501 0.91838 0.92221 1.88760 1.82233 1.33379 1.24677 1.20983 0.99836 0.87397 0.81841 0.89320 1.20938 0.95962 0.91021 0.96554 1.21412 1.10850 1.05620 0.93972 1.24203 0.95592 0.92612 1.01344 1.77255 1.23239 1.23727 0.90209 1.48717 1.36136 1.19607 1.09517 1.22518 0.95318 1.00091 0.87722 0.89108 0.91553 0.89884 0.92728 0.96070 0.92293 0.87968 0.85988 0.84144 0.92645 0.84538 0.77331 0.89405 0.89096 0.86186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.88 9.06 127.77 1.16 3.03 16 2 N -0.60 -22.69 2.83 -851.14 -2.41 -25.10 16 3 C 0.22 10.42 4.23 85.63 0.36 10.78 16 4 C -0.54 -31.17 9.94 25.60 0.25 -30.92 16 5 H 0.03 1.72 8.06 -2.91 -0.02 1.69 16 6 C 0.01 0.62 5.47 84.66 0.46 1.08 16 7 N -0.95 -59.64 13.96 21.45 0.30 -59.34 16 8 Si 0.95 43.55 27.47 68.60 1.88 45.43 16 9 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 10 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 11 H -0.23 -9.42 6.54 99.48 0.65 -8.77 16 12 C 0.51 19.41 7.01 87.66 0.61 20.03 16 13 O -0.59 -28.21 14.84 -3.04 -0.05 -28.25 16 14 C -0.12 -3.27 2.12 -10.55 -0.02 -3.29 16 15 H 0.11 2.97 6.95 -2.39 -0.02 2.95 16 16 C -0.14 -2.16 5.81 31.89 0.19 -1.98 16 17 C 0.04 0.65 7.72 72.66 0.56 1.21 16 18 O -0.37 -8.34 7.88 -148.98 -1.17 -9.51 16 19 C 0.16 4.58 3.48 30.22 0.11 4.69 16 20 H 0.09 3.20 6.44 -2.39 -0.02 3.18 16 21 C 0.08 2.54 5.84 41.41 0.24 2.78 16 22 C -0.29 -9.30 10.72 21.99 0.24 -9.06 16 23 C 0.05 1.32 12.03 85.24 1.03 2.35 16 24 N -0.32 -9.51 12.58 -57.02 -0.72 -10.23 16 25 N -0.36 -9.60 4.01 -356.04 -1.43 -11.03 16 26 C 0.08 1.45 11.06 127.77 1.41 2.86 16 27 H 0.09 1.59 7.09 -2.39 -0.02 1.57 16 28 H 0.07 1.87 8.07 -2.38 -0.02 1.85 16 29 H 0.08 1.74 6.25 -2.39 -0.01 1.73 16 30 H 0.05 2.30 7.13 -2.39 -0.02 2.28 16 31 H 0.02 1.06 6.85 -2.38 -0.02 1.05 16 32 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 33 H 0.10 1.51 5.91 -2.38 -0.01 1.50 16 34 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.14 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.14 4.69 8.06 -2.91 -0.02 4.67 16 38 H 0.21 4.41 8.06 -2.91 -0.02 4.38 16 39 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.12 1.95 5.18 -2.39 -0.01 1.94 16 Total: -1.00 -81.38 331.84 3.99 -77.39 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: 0.98 Total: 17.07 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: 6.60 Total: 3.58 kcal Atomic # 7 Polarization: -101.44 SS G_CDS: -4.26 Total: -105.70 kcal Atomic # 8 Polarization: -36.55 SS G_CDS: -1.22 Total: -37.77 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 1.88 Total: 45.43 kcal Total: -81.38 3.99 -77.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332394971.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.104 kcal (2) G-P(sol) polarization free energy of solvation -81.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds