Wall clock time and date at job start Tue Mar 31 2020 02:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46495 * 109.47250 * 2 1 4 4 C 1.36880 * 126.39650 * 265.18255 * 3 2 1 5 5 C 1.34663 * 106.82036 * 180.25268 * 4 3 2 6 6 N 1.34125 * 108.02045 * 359.74369 * 5 4 3 7 7 C 1.30494 * 109.25432 * 359.97438 * 6 5 4 8 8 C 1.50712 * 125.65200 * 180.02562 * 7 6 5 9 9 H 1.09001 * 109.99219 * 163.93873 * 8 7 6 10 10 O 1.43742 * 109.87478 * 42.85356 * 8 7 6 11 11 C 1.44385 * 106.97347 * 214.06033 * 10 8 7 12 12 C 1.55002 * 103.48745 * 40.06745 * 11 10 8 13 13 C 1.54102 * 109.87529 * 285.02519 * 8 7 6 14 14 H 1.09000 * 110.48888 * 2.64138 * 13 8 7 15 15 C 1.50703 * 110.48526 * 240.12722 * 13 8 7 16 16 O 1.21288 * 120.00042 * 0.02562 * 15 13 8 17 17 N 1.34780 * 119.99619 * 179.97438 * 15 13 8 18 18 C 1.46495 * 120.00125 * 0.02562 * 17 15 13 19 19 C 1.37098 * 119.99577 * 179.97438 * 17 15 13 20 20 H 1.08003 * 120.00272 * 24.90147 * 19 17 15 21 21 C 1.38956 * 120.00087 * 204.89722 * 19 17 15 22 22 N 1.31410 * 119.99824 * 12.48498 * 21 19 17 23 23 Si 1.86800 * 120.00206 * 192.49015 * 21 19 17 24 24 H 1.48500 * 109.46841 * 84.98518 * 23 21 19 25 25 H 1.48498 * 109.46854 * 204.98820 * 23 21 19 26 26 H 1.48496 * 109.46971 * 324.98763 * 23 21 19 27 27 H 1.08996 * 109.47367 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47640 * 300.00794 * 1 2 3 29 29 H 1.09011 * 109.46782 * 60.00828 * 1 2 3 30 30 H 1.09001 * 109.47640 * 239.99206 * 2 1 3 31 31 H 1.09006 * 109.46661 * 119.99896 * 2 1 3 32 32 H 1.08005 * 126.58862 * 359.97438 * 4 3 2 33 33 H 1.08004 * 125.99357 * 179.72240 * 5 4 3 34 34 H 1.09000 * 110.61906 * 158.56022 * 11 10 8 35 35 H 1.08994 * 110.62040 * 281.40988 * 11 10 8 36 36 H 1.09006 * 110.90697 * 204.77546 * 12 11 10 37 37 H 1.08999 * 110.91059 * 81.17257 * 12 11 10 38 38 H 1.09001 * 109.47664 * 88.41687 * 18 17 15 39 39 H 1.09004 * 109.46857 * 208.41219 * 18 17 15 40 40 H 1.09000 * 109.47041 * 328.41021 * 18 17 15 41 41 H 0.96996 * 120.00203 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3763 2.1161 -1.0979 5 6 2.7689 3.3230 -0.6478 6 7 2.6484 3.3270 0.6880 7 6 2.1956 2.1685 1.0827 8 6 1.9222 1.7725 2.5109 9 1 1.2966 0.8803 2.5370 10 8 1.2658 2.8500 3.1997 11 6 1.7292 2.8206 4.5668 12 6 3.2388 2.4967 4.4300 13 6 3.2509 1.5026 3.2433 14 1 4.0966 1.7013 2.5850 15 6 3.2973 0.0824 3.7454 16 8 2.3614 -0.6626 3.5449 17 7 4.3792 -0.3601 4.4163 18 6 5.5098 0.5396 4.6580 19 6 4.4212 -1.6519 4.8735 20 1 3.8299 -2.4154 4.3899 21 6 5.2246 -1.9789 5.9591 22 7 5.7493 -1.0276 6.6984 23 14 5.5589 -3.7708 6.3674 24 1 6.7026 -4.2585 5.5553 25 1 5.8869 -3.8968 7.8103 26 1 4.3531 -4.5816 6.0613 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8902 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 2.3531 1.7890 -2.1270 33 1 3.1196 4.1438 -1.2558 34 1 1.5866 3.7915 5.0414 35 1 1.2163 2.0406 5.1294 36 1 3.6193 2.0253 5.3362 37 1 3.8093 3.3943 4.1912 38 1 5.3497 1.0823 5.5897 39 1 6.4285 -0.0426 4.7300 40 1 5.5925 1.2485 3.8341 41 1 6.3098 -1.2559 7.4564 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332396770.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:22 Heat of formation + Delta-G solvation = -5.479545 kcal Electronic energy + Delta-G solvation = -24818.850456 eV Core-core repulsion = 21314.605062 eV Total energy + Delta-G solvation = -3504.245393 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -41.97951 -39.65790 -37.58297 -34.90139 -34.71642 -32.30892 -31.26565 -30.69091 -29.92172 -27.58620 -26.35407 -24.87361 -23.75701 -22.85533 -21.82295 -21.07129 -19.59045 -18.82027 -17.26888 -16.95532 -16.15462 -15.61916 -15.46066 -15.13761 -14.90823 -14.44652 -14.36516 -13.92514 -13.79929 -13.61924 -13.43414 -12.68102 -12.62255 -12.48555 -12.16087 -12.06730 -11.76134 -11.50063 -11.29302 -11.23989 -11.02336 -10.89513 -10.79036 -10.60925 -10.41500 -10.30233 -9.69067 -9.44327 -9.42472 -9.08753 -8.51734 -8.14690 -7.75808 -6.40452 -3.98287 2.17435 2.87339 3.10748 3.20127 3.24191 3.32404 3.73315 4.04264 4.22529 4.64224 4.68143 4.73156 4.95002 5.01314 5.02877 5.11757 5.29131 5.32683 5.36998 5.48414 5.54076 5.67980 5.70497 5.80767 5.82934 5.91872 6.03355 6.05490 6.21295 6.29138 6.35101 6.41921 6.53721 6.77865 6.94399 7.10690 7.15373 7.34581 7.48504 8.04312 8.35866 8.37950 9.07671 9.31806 9.86163 10.64044 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.019551 B = 0.005011 C = 0.004560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.790446 B = 5586.140870 C = 6139.460824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.091 3.909 3 N -0.446 5.446 4 C -0.063 4.063 5 C -0.035 4.035 6 N -0.473 5.473 7 C 0.216 3.784 8 C 0.175 3.825 9 H 0.107 0.893 10 O -0.360 6.360 11 C 0.050 3.950 12 C -0.141 4.141 13 C -0.121 4.121 14 H 0.096 0.904 15 C 0.452 3.548 16 O -0.590 6.590 17 N -0.436 5.436 18 C 0.109 3.891 19 C -0.310 4.310 20 H 0.098 0.902 21 C 0.033 3.967 22 N -0.879 5.879 23 Si 0.926 3.074 24 H -0.277 1.277 25 H -0.283 1.283 26 H -0.269 1.269 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.090 0.910 31 H 0.107 0.893 32 H 0.171 0.829 33 H 0.167 0.833 34 H 0.094 0.906 35 H 0.064 0.936 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.059 0.941 39 H 0.070 0.930 40 H 0.028 0.972 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.083 4.914 -9.881 11.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.032 4.032 3 N -0.129 5.129 4 C -0.196 4.196 5 C -0.184 4.184 6 N -0.192 5.192 7 C -0.047 4.047 8 C 0.115 3.885 9 H 0.125 0.875 10 O -0.277 6.277 11 C -0.026 4.026 12 C -0.179 4.179 13 C -0.144 4.144 14 H 0.114 0.886 15 C 0.239 3.761 16 O -0.476 6.476 17 N -0.153 5.153 18 C -0.035 4.035 19 C -0.438 4.438 20 H 0.116 0.884 21 C -0.170 4.170 22 N -0.517 5.517 23 Si 0.753 3.247 24 H -0.203 1.203 25 H -0.209 1.209 26 H -0.194 1.194 27 H 0.096 0.904 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.109 0.891 31 H 0.126 0.874 32 H 0.189 0.811 33 H 0.184 0.816 34 H 0.112 0.888 35 H 0.082 0.918 36 H 0.112 0.888 37 H 0.101 0.899 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.046 0.954 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.394 5.197 -9.357 11.570 hybrid contribution 0.463 -1.539 -0.289 1.633 sum -3.932 3.658 -9.646 11.040 Atomic orbital electron populations 1.22117 0.93997 1.03240 1.02949 1.22023 0.95908 0.79723 1.05501 1.45434 1.48189 1.12749 1.06499 1.22645 1.10183 0.94255 0.92507 1.22303 1.07182 0.97339 0.91588 1.70251 1.17959 1.19442 1.11533 1.23009 1.03394 0.87602 0.90650 1.20808 0.93788 0.90566 0.83365 0.87532 1.88860 1.65695 1.51471 1.21717 1.23564 0.93400 1.01941 0.83740 1.23164 0.97397 0.98821 0.98564 1.22428 0.98193 0.95874 0.97914 0.88615 1.19693 0.83316 0.87844 0.85232 1.90459 1.36748 1.57457 1.62986 1.43489 1.13001 1.11407 1.47448 1.21581 0.90863 0.92905 0.98128 1.19627 1.27251 0.84413 1.12487 0.88413 1.25362 0.97259 0.99682 0.94742 1.69973 1.32746 1.32292 1.16713 0.85939 0.78988 0.82274 0.77487 1.20291 1.20879 1.19391 0.90391 0.91494 0.92297 0.89139 0.87431 0.81146 0.81575 0.88832 0.91761 0.88791 0.89926 0.92250 0.91153 0.95368 0.92095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.89 10.24 37.16 0.38 -1.51 16 2 C 0.09 1.18 6.34 -4.05 -0.03 1.15 16 3 N -0.45 -6.82 2.75 -113.90 -0.31 -7.13 16 4 C -0.06 -0.84 11.58 -16.56 -0.19 -1.03 16 5 C -0.04 -0.52 11.87 -17.82 -0.21 -0.74 16 6 N -0.47 -8.72 11.24 -10.81 -0.12 -8.84 16 7 C 0.22 3.91 6.59 -155.42 -1.02 2.89 16 8 C 0.17 3.31 3.31 -27.30 -0.09 3.22 16 9 H 0.11 2.14 5.46 -51.93 -0.28 1.86 16 10 O -0.36 -6.79 11.16 -35.23 -0.39 -7.18 16 11 C 0.05 0.83 7.72 38.21 0.29 1.12 16 12 C -0.14 -2.44 5.90 -24.72 -0.15 -2.58 16 13 C -0.12 -2.35 2.12 -90.24 -0.19 -2.55 16 14 H 0.10 1.86 6.85 -51.93 -0.36 1.51 16 15 C 0.45 10.54 6.93 -10.98 -0.08 10.47 16 16 O -0.59 -15.12 14.89 5.55 0.08 -15.03 16 17 N -0.44 -10.77 2.99 -122.19 -0.37 -11.13 16 18 C 0.11 2.38 7.38 59.84 0.44 2.82 16 19 C -0.31 -8.32 9.23 -14.93 -0.14 -8.45 16 20 H 0.10 2.73 7.46 -52.48 -0.39 2.34 16 21 C 0.03 0.86 5.06 -17.47 -0.09 0.77 16 22 N -0.88 -22.68 10.84 55.50 0.60 -22.08 16 23 Si 0.93 20.13 29.57 -169.99 -5.03 15.10 16 24 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 25 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 26 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 27 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.07 0.89 8.02 -51.93 -0.42 0.47 16 29 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 30 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.11 1.68 7.53 -51.93 -0.39 1.28 16 32 H 0.17 1.60 8.06 -52.48 -0.42 1.18 16 33 H 0.17 1.95 8.06 -52.48 -0.42 1.52 16 34 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.09 1.72 6.08 -51.93 -0.32 1.41 16 37 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.06 1.31 6.67 -51.93 -0.35 0.97 16 39 H 0.07 1.62 7.01 -51.93 -0.36 1.26 16 40 H 0.03 0.53 6.34 -51.93 -0.33 0.20 16 41 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 LS Contribution 333.70 15.07 5.03 5.03 Total: -1.00 -31.43 333.70 -7.28 -38.71 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -5.71 Total: 6.99 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: -1.07 Total: 5.57 kcal Atomic # 7 Polarization: -48.99 SS G_CDS: -0.20 Total: -49.18 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -0.31 Total: -22.22 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.03 Total: 15.10 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.43 -7.28 -38.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332396770.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.232 kcal (2) G-P(sol) polarization free energy of solvation -31.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds