Wall clock time and date at job start Tue Mar 31 2020 02:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46495 * 109.47250 * 2 1 4 4 C 1.36880 * 126.39650 * 265.18255 * 3 2 1 5 5 C 1.34663 * 106.82036 * 180.25268 * 4 3 2 6 6 N 1.34125 * 108.02045 * 359.74369 * 5 4 3 7 7 C 1.30494 * 109.25432 * 359.97438 * 6 5 4 8 8 C 1.50712 * 125.65200 * 180.02562 * 7 6 5 9 9 H 1.09001 * 109.99219 * 163.93873 * 8 7 6 10 10 O 1.43742 * 109.87478 * 42.85356 * 8 7 6 11 11 C 1.44385 * 106.97347 * 214.06033 * 10 8 7 12 12 C 1.55002 * 103.48745 * 40.06745 * 11 10 8 13 13 C 1.54102 * 109.87529 * 285.02519 * 8 7 6 14 14 H 1.09000 * 110.48888 * 2.64138 * 13 8 7 15 15 C 1.50703 * 110.48526 * 240.12722 * 13 8 7 16 16 O 1.21288 * 120.00042 * 0.02562 * 15 13 8 17 17 N 1.34780 * 119.99619 * 179.97438 * 15 13 8 18 18 C 1.46495 * 120.00125 * 0.02562 * 17 15 13 19 19 C 1.37098 * 119.99577 * 179.97438 * 17 15 13 20 20 H 1.08003 * 120.00272 * 24.90147 * 19 17 15 21 21 C 1.38956 * 120.00087 * 204.89722 * 19 17 15 22 22 N 1.31410 * 119.99824 * 12.48498 * 21 19 17 23 23 Si 1.86800 * 120.00206 * 192.49015 * 21 19 17 24 24 H 1.48500 * 109.46841 * 84.98518 * 23 21 19 25 25 H 1.48498 * 109.46854 * 204.98820 * 23 21 19 26 26 H 1.48496 * 109.46971 * 324.98763 * 23 21 19 27 27 H 1.08996 * 109.47367 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47640 * 300.00794 * 1 2 3 29 29 H 1.09011 * 109.46782 * 60.00828 * 1 2 3 30 30 H 1.09001 * 109.47640 * 239.99206 * 2 1 3 31 31 H 1.09006 * 109.46661 * 119.99896 * 2 1 3 32 32 H 1.08005 * 126.58862 * 359.97438 * 4 3 2 33 33 H 1.08004 * 125.99357 * 179.72240 * 5 4 3 34 34 H 1.09000 * 110.61906 * 158.56022 * 11 10 8 35 35 H 1.08994 * 110.62040 * 281.40988 * 11 10 8 36 36 H 1.09006 * 110.90697 * 204.77546 * 12 11 10 37 37 H 1.08999 * 110.91059 * 81.17257 * 12 11 10 38 38 H 1.09001 * 109.47664 * 88.41687 * 18 17 15 39 39 H 1.09004 * 109.46857 * 208.41219 * 18 17 15 40 40 H 1.09000 * 109.47041 * 328.41021 * 18 17 15 41 41 H 0.96996 * 120.00203 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3763 2.1161 -1.0979 5 6 2.7689 3.3230 -0.6478 6 7 2.6484 3.3270 0.6880 7 6 2.1956 2.1685 1.0827 8 6 1.9222 1.7725 2.5109 9 1 1.2966 0.8803 2.5370 10 8 1.2658 2.8500 3.1997 11 6 1.7292 2.8206 4.5668 12 6 3.2388 2.4967 4.4300 13 6 3.2509 1.5026 3.2433 14 1 4.0966 1.7013 2.5850 15 6 3.2973 0.0824 3.7454 16 8 2.3614 -0.6626 3.5449 17 7 4.3792 -0.3601 4.4163 18 6 5.5098 0.5396 4.6580 19 6 4.4212 -1.6519 4.8735 20 1 3.8299 -2.4154 4.3899 21 6 5.2246 -1.9789 5.9591 22 7 5.7493 -1.0276 6.6984 23 14 5.5589 -3.7708 6.3674 24 1 6.7026 -4.2585 5.5553 25 1 5.8869 -3.8968 7.8103 26 1 4.3531 -4.5816 6.0613 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8902 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 2.3531 1.7890 -2.1270 33 1 3.1196 4.1438 -1.2558 34 1 1.5866 3.7915 5.0414 35 1 1.2163 2.0406 5.1294 36 1 3.6193 2.0253 5.3362 37 1 3.8093 3.3943 4.1912 38 1 5.3497 1.0823 5.5897 39 1 6.4285 -0.0426 4.7300 40 1 5.5925 1.2485 3.8341 41 1 6.3098 -1.2559 7.4564 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332396770.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:21 Heat of formation + Delta-G solvation = -25.232330 kcal Electronic energy + Delta-G solvation = -24819.707001 eV Core-core repulsion = 21314.605062 eV Total energy + Delta-G solvation = -3505.101938 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.17461 -41.27521 -39.26881 -36.73120 -35.91406 -34.08101 -32.97157 -32.01638 -31.00754 -28.92373 -28.19355 -26.68298 -24.93359 -24.24699 -23.32375 -22.20857 -20.98400 -20.45942 -18.93018 -18.53378 -17.74910 -17.23095 -16.92820 -16.44460 -16.29806 -16.07815 -15.83907 -15.62990 -15.24165 -14.69842 -14.50527 -14.36817 -14.04261 -13.92396 -13.59052 -13.44741 -13.22839 -13.03719 -12.96048 -12.70231 -12.51090 -12.42429 -12.29345 -12.17610 -12.14163 -12.03039 -11.02255 -10.92362 -10.89205 -10.62344 -10.34450 -9.71159 -9.32731 -8.36379 -6.02605 1.00604 1.36607 1.41353 1.52422 1.74794 1.91814 2.12305 2.25357 2.81119 3.01867 3.04530 3.32051 3.53861 3.74908 3.80752 3.85102 3.99227 4.02300 4.09481 4.27130 4.32304 4.34779 4.50360 4.56063 4.62941 4.75007 4.77162 4.77768 4.84416 4.88746 4.95963 4.98977 5.11295 5.33043 5.40231 5.43192 5.70385 5.87898 6.06610 6.16622 6.42864 7.11157 7.16214 7.39700 7.94610 8.66657 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.019551 B = 0.005011 C = 0.004560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.790446 B = 5586.140870 C = 6139.460824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.089 3.911 3 N -0.447 5.447 4 C -0.042 4.042 5 C -0.057 4.057 6 N -0.500 5.500 7 C 0.182 3.818 8 C 0.182 3.818 9 H 0.086 0.914 10 O -0.371 6.371 11 C 0.049 3.951 12 C -0.135 4.135 13 C -0.111 4.111 14 H 0.097 0.903 15 C 0.448 3.552 16 O -0.620 6.620 17 N -0.451 5.451 18 C 0.121 3.879 19 C -0.345 4.345 20 H 0.075 0.925 21 C 0.001 3.999 22 N -0.893 5.893 23 Si 0.989 3.011 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.275 1.275 27 H 0.095 0.905 28 H 0.039 0.961 29 H 0.076 0.924 30 H 0.125 0.875 31 H 0.073 0.927 32 H 0.217 0.783 33 H 0.195 0.805 34 H 0.128 0.872 35 H 0.052 0.948 36 H 0.082 0.918 37 H 0.105 0.895 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.056 0.944 41 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.657 5.350 -11.322 13.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.033 4.033 3 N -0.130 5.130 4 C -0.175 4.175 5 C -0.205 4.205 6 N -0.220 5.220 7 C -0.080 4.080 8 C 0.122 3.878 9 H 0.104 0.896 10 O -0.289 6.289 11 C -0.027 4.027 12 C -0.173 4.173 13 C -0.133 4.133 14 H 0.115 0.885 15 C 0.237 3.763 16 O -0.508 6.508 17 N -0.168 5.168 18 C -0.022 4.022 19 C -0.473 4.473 20 H 0.093 0.907 21 C -0.201 4.201 22 N -0.531 5.531 23 Si 0.812 3.188 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.200 1.200 27 H 0.113 0.887 28 H 0.058 0.942 29 H 0.095 0.905 30 H 0.143 0.857 31 H 0.092 0.908 32 H 0.233 0.767 33 H 0.212 0.788 34 H 0.146 0.854 35 H 0.071 0.929 36 H 0.100 0.900 37 H 0.123 0.877 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.958 5.647 -10.788 12.804 hybrid contribution 0.293 -1.654 0.099 1.683 sum -3.665 3.993 -10.690 11.985 Atomic orbital electron populations 1.22069 0.92852 1.04235 1.02402 1.22137 0.96844 0.78800 1.05484 1.45643 1.47630 1.13267 1.06474 1.23387 1.07226 0.93278 0.93645 1.22884 1.07873 0.99090 0.90628 1.70161 1.18349 1.19784 1.13659 1.22711 1.06005 0.88616 0.90701 1.20534 0.92746 0.89967 0.84553 0.89648 1.88848 1.66107 1.51295 1.22648 1.23718 0.92578 1.03500 0.82944 1.23156 0.98278 0.98835 0.96989 1.22307 0.98785 0.93494 0.98747 0.88500 1.20346 0.82523 0.89193 0.84207 1.90430 1.37773 1.58788 1.63795 1.43696 1.14085 1.11310 1.47743 1.21494 0.89220 0.92485 0.99008 1.19604 1.28630 0.85260 1.13771 0.90747 1.26087 0.96385 1.03604 0.94039 1.70037 1.32504 1.33813 1.16726 0.85014 0.78691 0.77406 0.77646 1.19177 1.19877 1.19961 0.88676 0.94170 0.90542 0.85663 0.90842 0.76677 0.78841 0.85383 0.92931 0.89955 0.87661 0.92705 0.92692 0.92589 0.91585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.48 10.24 71.98 0.74 -2.75 16 2 C 0.09 2.24 6.34 86.38 0.55 2.79 16 3 N -0.45 -13.13 2.75 -514.28 -1.41 -14.54 16 4 C -0.04 -0.99 11.58 83.09 0.96 -0.03 16 5 C -0.06 -1.55 11.87 83.52 0.99 -0.56 16 6 N -0.50 -17.90 11.24 -188.13 -2.12 -20.01 16 7 C 0.18 6.53 6.59 138.13 0.91 7.44 16 8 C 0.18 7.06 3.31 30.22 0.10 7.16 16 9 H 0.09 3.64 5.46 -2.39 -0.01 3.63 16 10 O -0.37 -14.09 11.16 -148.98 -1.66 -15.75 16 11 C 0.05 1.59 7.72 72.67 0.56 2.15 16 12 C -0.13 -4.59 5.90 31.90 0.19 -4.40 16 13 C -0.11 -4.36 2.12 -10.55 -0.02 -4.38 16 14 H 0.10 3.78 6.85 -2.39 -0.02 3.76 16 15 C 0.45 21.67 6.93 87.66 0.61 22.27 16 16 O -0.62 -33.37 14.89 -3.05 -0.05 -33.41 16 17 N -0.45 -22.87 2.99 -658.89 -1.97 -24.84 16 18 C 0.12 5.32 7.38 127.77 0.94 6.26 16 19 C -0.34 -19.07 9.23 84.04 0.78 -18.30 16 20 H 0.07 4.36 7.46 -2.91 -0.02 4.34 16 21 C 0.00 0.07 5.06 84.93 0.43 0.50 16 22 N -0.89 -46.15 10.84 21.66 0.23 -45.91 16 23 Si 0.99 41.35 29.57 68.60 2.03 43.37 16 24 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 25 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 26 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 27 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.04 1.09 8.02 -2.39 -0.02 1.07 16 29 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 30 H 0.13 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.07 2.38 7.53 -2.38 -0.02 2.37 16 32 H 0.22 2.94 8.06 -2.91 -0.02 2.92 16 33 H 0.19 3.95 8.06 -2.91 -0.02 3.93 16 34 H 0.13 3.26 8.14 -2.39 -0.02 3.24 16 35 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.08 3.02 6.08 -2.38 -0.01 3.00 16 37 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 38 H 0.05 2.44 6.67 -2.39 -0.02 2.42 16 39 H 0.05 2.55 7.01 -2.38 -0.02 2.53 16 40 H 0.06 2.10 6.34 -2.39 -0.02 2.08 16 41 H 0.27 13.31 8.31 -92.71 -0.77 12.54 16 Total: -1.00 -69.85 333.70 3.82 -66.03 By element: Atomic # 1 Polarization: 25.86 SS G_CDS: 1.04 Total: 26.90 kcal Atomic # 6 Polarization: 10.43 SS G_CDS: 7.73 Total: 18.16 kcal Atomic # 7 Polarization: -100.04 SS G_CDS: -5.26 Total: -105.30 kcal Atomic # 8 Polarization: -47.45 SS G_CDS: -1.71 Total: -49.16 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.37 kcal Total: -69.85 3.82 -66.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332396770.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.800 kcal (2) G-P(sol) polarization free energy of solvation -69.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds