Wall clock time and date at job start Tue Mar 31 2020 03:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46498 * 119.99912 * 2 1 4 4 C 1.50699 * 109.46824 * 90.00142 * 3 2 1 5 5 H 1.07996 * 119.99909 * 0.02562 * 4 3 2 6 6 C 1.37883 * 120.00079 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00030 * 180.02562 * 6 4 3 8 8 Si 1.86805 * 119.99844 * 0.02562 * 6 4 3 9 9 H 1.48505 * 109.46849 * 270.00139 * 8 6 4 10 10 H 1.48496 * 109.47194 * 149.99900 * 8 6 4 11 11 H 1.48503 * 109.46950 * 29.99913 * 8 6 4 12 12 C 1.34773 * 119.99877 * 180.02562 * 2 1 3 13 13 O 1.21290 * 119.99463 * 185.76961 * 12 2 1 14 14 C 1.50700 * 120.00555 * 5.76727 * 12 2 1 15 15 H 1.09004 * 110.43352 * 47.96626 * 14 12 2 16 16 C 1.54809 * 110.48457 * 285.42148 * 14 12 2 17 17 C 1.54994 * 102.09370 * 262.20224 * 16 14 12 18 18 O 1.44380 * 103.48912 * 322.97598 * 17 16 14 19 19 C 1.44037 * 107.03985 * 40.01240 * 18 17 16 20 20 H 1.09001 * 109.91456 * 92.94857 * 19 18 17 21 21 C 1.50708 * 109.99397 * 214.19413 * 19 18 17 22 22 N 1.30493 * 125.64649 * 42.40794 * 21 19 18 23 23 C 1.34131 * 109.25742 * 179.89459 * 22 21 19 24 24 C 1.34675 * 108.01306 * 0.36873 * 23 22 21 25 25 N 1.35036 * 125.64695 * 222.71409 * 21 19 18 26 26 C 1.46494 * 126.40407 * 359.94011 * 25 21 19 27 27 H 1.08998 * 109.47554 * 94.31917 * 1 2 3 28 28 H 1.09006 * 109.46990 * 214.31480 * 1 2 3 29 29 H 1.09004 * 109.47365 * 334.31409 * 1 2 3 30 30 H 1.09004 * 109.47187 * 330.00706 * 3 2 1 31 31 H 1.09001 * 109.47586 * 210.00136 * 3 2 1 32 32 H 0.97004 * 119.99820 * 179.97438 * 7 6 4 33 33 H 1.09004 * 110.91160 * 20.40391 * 16 14 12 34 34 H 1.09010 * 110.90165 * 143.96892 * 16 14 12 35 35 H 1.08991 * 110.61843 * 81.48385 * 17 16 14 36 36 H 1.09001 * 110.61726 * 204.32224 * 17 16 14 37 37 H 1.07992 * 125.99410 * 180.18349 * 23 22 21 38 38 H 1.08001 * 126.58712 * 179.81579 * 24 23 22 39 39 H 1.09005 * 109.47404 * 90.00038 * 26 25 21 40 40 H 1.09001 * 109.47629 * 210.00309 * 26 25 21 41 41 H 1.09006 * 109.47243 * 330.00514 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 1.4208 5 1 2.0981 1.0956 2.2416 6 6 3.1269 2.8774 1.6729 7 7 3.3465 3.2567 2.9128 8 14 3.7338 3.9288 0.2531 9 1 5.1069 3.5068 -0.1236 10 1 3.7497 5.3554 0.6650 11 1 2.8272 3.7597 -0.9109 12 6 2.1388 -1.1672 -0.0005 13 8 3.3471 -1.1698 0.1051 14 6 1.3911 -2.4690 -0.1322 15 1 0.6775 -2.4165 -0.9545 16 6 0.6676 -2.8145 1.1920 17 6 1.6584 -3.8052 1.8545 18 8 2.1729 -4.5637 0.7389 19 6 2.3742 -3.6365 -0.3449 20 1 3.3990 -3.2655 -0.3305 21 6 2.0895 -4.3128 -1.6612 22 7 1.0907 -5.1172 -1.9026 23 6 1.1515 -5.5276 -3.1781 24 6 2.2336 -4.9621 -3.7465 25 7 2.8289 -4.1913 -2.7846 26 6 4.0415 -3.3850 -2.9443 27 1 -0.3634 -0.0774 -1.0247 28 1 -0.3633 -0.8489 0.5794 29 1 -0.3634 0.9261 0.4454 30 1 1.6083 2.0284 -0.5137 31 1 3.1499 1.1385 -0.5138 32 1 3.8240 4.0823 3.0901 33 1 0.5371 -1.9246 1.8078 34 1 -0.2916 -3.2946 0.9973 35 1 2.4624 -3.2664 2.3558 36 1 1.1381 -4.4563 2.5570 37 1 0.4565 -6.1967 -3.6634 38 1 2.5671 -5.0913 -4.7655 39 1 4.9145 -3.9879 -2.6941 40 1 4.1186 -3.0451 -3.9771 41 1 3.9939 -2.5217 -2.2803 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332434831.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:02 Heat of formation + Delta-G solvation = -1.795059 kcal Electronic energy + Delta-G solvation = -24484.062515 eV Core-core repulsion = 20979.976893 eV Total energy + Delta-G solvation = -3504.085622 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.18211 -40.14057 -38.03342 -35.11255 -34.03514 -32.86199 -32.06910 -31.03313 -28.64095 -27.88302 -26.96247 -26.08023 -23.92564 -22.58299 -21.64933 -21.32708 -19.81128 -18.66752 -17.54066 -17.01164 -16.53843 -15.99076 -15.83110 -15.56951 -15.13651 -14.84807 -14.63476 -14.04949 -13.83452 -13.55869 -13.14235 -13.08281 -12.96537 -12.68797 -12.65152 -12.49368 -12.16839 -11.92174 -11.63507 -11.44372 -11.17634 -11.00034 -10.91846 -10.59333 -10.22262 -9.94699 -9.73366 -9.64049 -9.60259 -9.13844 -8.65240 -8.41820 -7.83895 -6.14597 -4.13796 1.92914 2.64845 3.07129 3.09872 3.23049 3.28941 3.30315 3.63478 3.99978 4.31263 4.33140 4.57812 4.70086 4.76289 4.82628 4.97975 5.04329 5.13596 5.20927 5.23770 5.39449 5.39884 5.47515 5.57367 5.61682 5.76562 5.80576 5.85020 5.94736 6.02449 6.11603 6.25633 6.58604 6.70416 6.79439 6.85119 7.07970 7.19970 7.52990 8.08637 8.10990 8.38826 8.76134 8.89116 9.45006 10.98725 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.020490 B = 0.004654 C = 0.004241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.159618 B = 6014.387205 C = 6600.986038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.591 5.591 3 C 0.216 3.784 4 C -0.529 4.529 5 H 0.075 0.925 6 C 0.073 3.927 7 N -0.896 5.896 8 Si 0.875 3.125 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.267 1.267 12 C 0.514 3.486 13 O -0.537 6.537 14 C -0.132 4.132 15 H 0.106 0.894 16 C -0.141 4.141 17 C 0.048 3.952 18 O -0.354 6.354 19 C 0.176 3.824 20 H 0.107 0.893 21 C 0.208 3.792 22 N -0.469 5.469 23 C -0.033 4.033 24 C -0.059 4.059 25 N -0.451 5.451 26 C 0.063 3.937 27 H 0.045 0.955 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.031 0.969 31 H 0.034 0.966 32 H 0.265 0.735 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.099 0.901 37 H 0.170 0.830 38 H 0.174 0.826 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.704 -13.320 -11.634 18.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.322 5.322 3 C 0.096 3.904 4 C -0.567 4.567 5 H 0.093 0.907 6 C -0.129 4.129 7 N -0.534 5.534 8 Si 0.702 3.298 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.191 1.191 12 C 0.300 3.700 13 O -0.415 6.415 14 C -0.155 4.155 15 H 0.124 0.876 16 C -0.179 4.179 17 C -0.028 4.028 18 O -0.272 6.272 19 C 0.116 3.884 20 H 0.124 0.876 21 C -0.055 4.055 22 N -0.187 5.187 23 C -0.182 4.182 24 C -0.192 4.192 25 N -0.134 5.134 26 C -0.079 4.079 27 H 0.064 0.936 28 H 0.084 0.916 29 H 0.098 0.902 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.111 0.889 34 H 0.108 0.892 35 H 0.087 0.913 36 H 0.117 0.883 37 H 0.187 0.813 38 H 0.192 0.808 39 H 0.098 0.902 40 H 0.106 0.894 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.398 -13.500 -10.916 17.909 hybrid contribution 0.850 1.144 -1.374 1.980 sum -3.548 -12.356 -12.290 17.784 Atomic orbital electron populations 1.21825 0.80707 1.03649 1.00594 1.47778 1.06433 1.06881 1.71123 1.19705 0.92249 0.79904 0.98572 1.21289 1.37138 1.07174 0.91128 0.90687 1.24855 0.95231 0.97317 0.95536 1.69892 1.41287 1.23580 1.18628 0.86867 0.80051 0.79920 0.82927 1.19925 1.20987 1.19144 1.19998 0.87796 0.84805 0.77412 1.90650 1.14133 1.86654 1.50080 1.22623 0.98337 0.93483 1.01083 0.87595 1.23159 0.99582 1.00726 0.94385 1.23611 0.96002 0.93724 0.89470 1.88947 1.85742 1.31337 1.21167 1.20784 1.00110 0.85971 0.81560 0.87557 1.22935 0.91218 1.01514 0.89830 1.70248 1.20791 1.12001 1.15689 1.22353 0.99396 1.04942 0.91523 1.22713 0.99158 1.01295 0.96068 1.45253 1.22012 1.35757 1.10345 1.22205 0.84939 0.96211 1.04575 0.93607 0.91634 0.90161 0.95103 0.94754 0.92501 0.88909 0.89153 0.91255 0.88301 0.81313 0.80833 0.90158 0.89431 0.88448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.14 9.86 59.85 0.59 1.73 16 2 N -0.59 -11.66 2.86 -182.95 -0.52 -12.18 16 3 C 0.22 5.08 4.17 -5.19 -0.02 5.06 16 4 C -0.53 -14.73 9.94 -34.44 -0.34 -15.07 16 5 H 0.08 2.30 8.06 -52.49 -0.42 1.87 16 6 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 7 N -0.90 -27.06 13.96 55.43 0.77 -26.29 16 8 Si 0.88 20.95 27.47 -169.99 -4.67 16.28 16 9 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.27 -5.99 6.54 56.52 0.37 -5.62 16 12 C 0.51 9.94 6.85 -10.99 -0.08 9.86 16 13 O -0.54 -12.21 14.94 5.55 0.08 -12.12 16 14 C -0.13 -2.05 2.19 -90.24 -0.20 -2.25 16 15 H 0.11 1.56 7.42 -51.93 -0.39 1.17 16 16 C -0.14 -1.91 5.39 -24.73 -0.13 -2.04 16 17 C 0.05 0.68 7.72 38.21 0.30 0.97 16 18 O -0.35 -5.85 11.18 -35.23 -0.39 -6.25 16 19 C 0.18 2.83 3.29 -27.30 -0.09 2.74 16 20 H 0.11 1.83 5.49 -51.93 -0.29 1.54 16 21 C 0.21 3.22 6.59 -155.42 -1.02 2.19 16 22 N -0.47 -7.49 11.24 -10.82 -0.12 -7.61 16 23 C -0.03 -0.42 11.87 -17.81 -0.21 -0.63 16 24 C -0.06 -0.66 11.58 -16.56 -0.19 -0.85 16 25 N -0.45 -5.84 3.15 -121.28 -0.38 -6.22 16 26 C 0.06 0.65 10.76 59.84 0.64 1.29 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.84 4.97 -51.93 -0.26 0.59 16 29 H 0.08 1.23 8.04 -51.93 -0.42 0.81 16 30 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 31 H 0.03 0.85 6.94 -51.93 -0.36 0.49 16 32 H 0.27 7.48 8.31 -40.82 -0.34 7.15 16 33 H 0.09 1.29 6.71 -51.93 -0.35 0.94 16 34 H 0.09 1.06 8.14 -51.92 -0.42 0.63 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.17 1.64 8.06 -52.49 -0.42 1.21 16 38 H 0.17 1.28 8.06 -52.49 -0.42 0.85 16 39 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.10 1.18 7.36 -51.93 -0.38 0.80 16 LS Contribution 336.64 15.07 5.07 5.07 Total: -1.00 -35.24 336.64 -6.80 -42.03 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -5.78 Total: 2.31 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: -0.86 Total: 4.97 kcal Atomic # 7 Polarization: -52.05 SS G_CDS: -0.25 Total: -52.30 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: -0.31 Total: -18.37 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.67 Total: 16.28 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -35.24 -6.80 -42.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332434831.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.238 kcal (2) G-P(sol) polarization free energy of solvation -35.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds