Wall clock time and date at job start Tue Mar 31 2020 03:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46498 * 119.99912 * 2 1 4 4 C 1.50699 * 109.46824 * 90.00142 * 3 2 1 5 5 H 1.07996 * 119.99909 * 0.02562 * 4 3 2 6 6 C 1.37883 * 120.00079 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00030 * 180.02562 * 6 4 3 8 8 Si 1.86805 * 119.99844 * 0.02562 * 6 4 3 9 9 H 1.48505 * 109.46849 * 270.00139 * 8 6 4 10 10 H 1.48496 * 109.47194 * 149.99900 * 8 6 4 11 11 H 1.48503 * 109.46950 * 29.99913 * 8 6 4 12 12 C 1.34773 * 119.99877 * 180.02562 * 2 1 3 13 13 O 1.21290 * 119.99463 * 185.76961 * 12 2 1 14 14 C 1.50700 * 120.00555 * 5.76727 * 12 2 1 15 15 H 1.09004 * 110.43352 * 47.96626 * 14 12 2 16 16 C 1.54809 * 110.48457 * 285.42148 * 14 12 2 17 17 C 1.54994 * 102.09370 * 262.20224 * 16 14 12 18 18 O 1.44380 * 103.48912 * 322.97598 * 17 16 14 19 19 C 1.44037 * 107.03985 * 40.01240 * 18 17 16 20 20 H 1.09001 * 109.91456 * 92.94857 * 19 18 17 21 21 C 1.50708 * 109.99397 * 214.19413 * 19 18 17 22 22 N 1.30493 * 125.64649 * 42.40794 * 21 19 18 23 23 C 1.34131 * 109.25742 * 179.89459 * 22 21 19 24 24 C 1.34675 * 108.01306 * 0.36873 * 23 22 21 25 25 N 1.35036 * 125.64695 * 222.71409 * 21 19 18 26 26 C 1.46494 * 126.40407 * 359.94011 * 25 21 19 27 27 H 1.08998 * 109.47554 * 94.31917 * 1 2 3 28 28 H 1.09006 * 109.46990 * 214.31480 * 1 2 3 29 29 H 1.09004 * 109.47365 * 334.31409 * 1 2 3 30 30 H 1.09004 * 109.47187 * 330.00706 * 3 2 1 31 31 H 1.09001 * 109.47586 * 210.00136 * 3 2 1 32 32 H 0.97004 * 119.99820 * 179.97438 * 7 6 4 33 33 H 1.09004 * 110.91160 * 20.40391 * 16 14 12 34 34 H 1.09010 * 110.90165 * 143.96892 * 16 14 12 35 35 H 1.08991 * 110.61843 * 81.48385 * 17 16 14 36 36 H 1.09001 * 110.61726 * 204.32224 * 17 16 14 37 37 H 1.07992 * 125.99410 * 180.18349 * 23 22 21 38 38 H 1.08001 * 126.58712 * 179.81579 * 24 23 22 39 39 H 1.09005 * 109.47404 * 90.00038 * 26 25 21 40 40 H 1.09001 * 109.47629 * 210.00309 * 26 25 21 41 41 H 1.09006 * 109.47243 * 330.00514 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 1.4208 5 1 2.0981 1.0956 2.2416 6 6 3.1269 2.8774 1.6729 7 7 3.3465 3.2567 2.9128 8 14 3.7338 3.9288 0.2531 9 1 5.1069 3.5068 -0.1236 10 1 3.7497 5.3554 0.6650 11 1 2.8272 3.7597 -0.9109 12 6 2.1388 -1.1672 -0.0005 13 8 3.3471 -1.1698 0.1051 14 6 1.3911 -2.4690 -0.1322 15 1 0.6775 -2.4165 -0.9545 16 6 0.6676 -2.8145 1.1920 17 6 1.6584 -3.8052 1.8545 18 8 2.1729 -4.5637 0.7389 19 6 2.3742 -3.6365 -0.3449 20 1 3.3990 -3.2655 -0.3305 21 6 2.0895 -4.3128 -1.6612 22 7 1.0907 -5.1172 -1.9026 23 6 1.1515 -5.5276 -3.1781 24 6 2.2336 -4.9621 -3.7465 25 7 2.8289 -4.1913 -2.7846 26 6 4.0415 -3.3850 -2.9443 27 1 -0.3634 -0.0774 -1.0247 28 1 -0.3633 -0.8489 0.5794 29 1 -0.3634 0.9261 0.4454 30 1 1.6083 2.0284 -0.5137 31 1 3.1499 1.1385 -0.5138 32 1 3.8240 4.0823 3.0901 33 1 0.5371 -1.9246 1.8078 34 1 -0.2916 -3.2946 0.9973 35 1 2.4624 -3.2664 2.3558 36 1 1.1381 -4.4563 2.5570 37 1 0.4565 -6.1967 -3.6634 38 1 2.5671 -5.0913 -4.7655 39 1 4.9145 -3.9879 -2.6941 40 1 4.1186 -3.0451 -3.9771 41 1 3.9939 -2.5217 -2.2803 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332434831.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:01 Heat of formation + Delta-G solvation = -26.782981 kcal Electronic energy + Delta-G solvation = -24485.146073 eV Core-core repulsion = 20979.976893 eV Total energy + Delta-G solvation = -3505.169180 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.17550 -41.50329 -39.42887 -36.75171 -34.97739 -34.80479 -33.54504 -32.11009 -30.43492 -28.99194 -27.87747 -27.47043 -25.47015 -23.96083 -23.09427 -22.25525 -20.93294 -20.13608 -19.14563 -18.62000 -17.81627 -17.47778 -16.99872 -16.65506 -16.45247 -16.28032 -16.08426 -15.58789 -14.95497 -14.75270 -14.49745 -14.37362 -14.12737 -14.00536 -13.84255 -13.70491 -13.55081 -13.35478 -13.09788 -12.86850 -12.70712 -12.45670 -12.26126 -12.19713 -11.99744 -11.74551 -11.01342 -10.95004 -10.83053 -10.68198 -10.59014 -9.48027 -9.37474 -8.33584 -6.38887 0.96100 1.33023 1.36262 1.44803 1.58815 1.71924 2.06540 2.20491 2.30762 2.86180 3.00823 3.19160 3.39207 3.51991 3.75566 3.90127 3.92395 3.94775 4.23816 4.25794 4.29262 4.36428 4.52598 4.59864 4.60649 4.62238 4.73189 4.74505 4.77615 4.80891 4.88142 4.94314 4.95461 5.32528 5.43553 5.54893 5.64438 5.84213 6.11288 6.21860 6.56396 6.62859 7.11751 7.16462 7.29793 8.83308 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.020490 B = 0.004654 C = 0.004241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.159618 B = 6014.387205 C = 6600.986038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.599 5.599 3 C 0.224 3.776 4 C -0.535 4.535 5 H 0.029 0.971 6 C 0.012 3.988 7 N -0.945 5.945 8 Si 0.947 3.053 9 H -0.275 1.275 10 H -0.277 1.277 11 H -0.237 1.237 12 C 0.510 3.490 13 O -0.580 6.580 14 C -0.117 4.117 15 H 0.120 0.880 16 C -0.134 4.134 17 C 0.044 3.956 18 O -0.370 6.370 19 C 0.179 3.821 20 H 0.086 0.914 21 C 0.176 3.824 22 N -0.495 5.495 23 C -0.056 4.056 24 C -0.040 4.040 25 N -0.453 5.453 26 C 0.061 3.939 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.052 0.948 31 H 0.022 0.978 32 H 0.268 0.732 33 H 0.087 0.913 34 H 0.119 0.881 35 H 0.049 0.951 36 H 0.129 0.871 37 H 0.195 0.805 38 H 0.217 0.783 39 H 0.091 0.909 40 H 0.120 0.880 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.871 -13.900 -14.713 21.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.329 5.329 3 C 0.102 3.898 4 C -0.573 4.573 5 H 0.048 0.952 6 C -0.186 4.186 7 N -0.585 5.585 8 Si 0.769 3.231 9 H -0.200 1.200 10 H -0.202 1.202 11 H -0.160 1.160 12 C 0.298 3.702 13 O -0.461 6.461 14 C -0.140 4.140 15 H 0.138 0.862 16 C -0.172 4.172 17 C -0.032 4.032 18 O -0.288 6.288 19 C 0.118 3.882 20 H 0.103 0.897 21 C -0.085 4.085 22 N -0.215 5.215 23 C -0.204 4.204 24 C -0.174 4.174 25 N -0.136 5.136 26 C -0.080 4.080 27 H 0.096 0.904 28 H 0.104 0.896 29 H 0.093 0.907 30 H 0.070 0.930 31 H 0.040 0.960 32 H 0.077 0.923 33 H 0.106 0.894 34 H 0.137 0.863 35 H 0.067 0.933 36 H 0.147 0.853 37 H 0.211 0.789 38 H 0.234 0.766 39 H 0.109 0.891 40 H 0.138 0.862 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.610 -14.092 -14.000 20.641 hybrid contribution 1.218 1.222 -0.373 1.765 sum -4.392 -12.869 -14.374 19.787 Atomic orbital electron populations 1.22106 0.77730 1.04393 1.03011 1.47859 1.08360 1.05762 1.70952 1.19406 0.92699 0.82165 0.95534 1.21523 1.36783 1.06681 0.92325 0.95223 1.25842 0.95332 0.98934 0.98528 1.70051 1.42657 1.24496 1.21323 0.85736 0.79626 0.77767 0.79943 1.20050 1.20243 1.16002 1.20662 0.87502 0.85891 0.76157 1.90624 1.16232 1.87406 1.51845 1.22510 0.98029 0.90911 1.02530 0.86157 1.23198 1.00415 1.00505 0.93053 1.23750 0.95737 0.94305 0.89432 1.88930 1.86006 1.32026 1.21836 1.20601 0.99085 0.86162 0.82314 0.89681 1.22683 0.92593 1.03046 0.90213 1.70164 1.21358 1.12374 1.17562 1.22902 1.00813 1.05907 0.90757 1.23417 0.97818 0.99014 0.97104 1.45472 1.22288 1.35808 1.10045 1.22335 0.84449 0.95315 1.05920 0.90404 0.89581 0.90663 0.92972 0.96029 0.92304 0.89449 0.86309 0.93306 0.85336 0.78852 0.76648 0.89057 0.86205 0.90993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.95 9.86 127.77 1.26 3.21 16 2 N -0.60 -23.41 2.86 -851.12 -2.43 -25.84 16 3 C 0.22 10.47 4.17 85.63 0.36 10.83 16 4 C -0.53 -30.63 9.94 25.60 0.25 -30.37 16 5 H 0.03 1.91 8.06 -2.91 -0.02 1.88 16 6 C 0.01 0.67 5.47 84.66 0.46 1.14 16 7 N -0.95 -58.90 13.96 21.45 0.30 -58.60 16 8 Si 0.95 43.09 27.47 68.60 1.88 44.97 16 9 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 10 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.24 -9.57 6.54 99.48 0.65 -8.92 16 12 C 0.51 19.98 6.85 87.66 0.60 20.58 16 13 O -0.58 -27.50 14.94 -3.06 -0.05 -27.54 16 14 C -0.12 -3.58 2.19 -10.55 -0.02 -3.60 16 15 H 0.12 3.33 7.42 -2.38 -0.02 3.31 16 16 C -0.13 -3.50 5.39 31.89 0.17 -3.33 16 17 C 0.04 1.23 7.72 72.66 0.56 1.79 16 18 O -0.37 -12.31 11.18 -148.98 -1.67 -13.98 16 19 C 0.18 5.81 3.29 30.22 0.10 5.91 16 20 H 0.09 3.09 5.49 -2.39 -0.01 3.08 16 21 C 0.18 5.33 6.59 138.14 0.91 6.24 16 22 N -0.49 -15.08 11.24 -188.13 -2.11 -17.20 16 23 C -0.06 -1.27 11.87 83.52 0.99 -0.28 16 24 C -0.04 -0.77 11.58 83.09 0.96 0.19 16 25 N -0.45 -10.94 3.15 -537.60 -1.69 -12.63 16 26 C 0.06 1.17 10.76 127.77 1.37 2.55 16 27 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.09 2.04 4.97 -2.38 -0.01 2.03 16 29 H 0.07 2.20 8.04 -2.39 -0.02 2.18 16 30 H 0.05 2.23 7.13 -2.39 -0.02 2.21 16 31 H 0.02 1.07 6.94 -2.39 -0.02 1.05 16 32 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 33 H 0.09 2.39 6.71 -2.38 -0.02 2.37 16 34 H 0.12 2.46 8.14 -2.38 -0.02 2.44 16 35 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.13 2.77 8.14 -2.39 -0.02 2.75 16 37 H 0.19 3.17 8.06 -2.91 -0.02 3.15 16 38 H 0.22 2.09 8.06 -2.91 -0.02 2.06 16 39 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 40 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.07 1.77 7.36 -2.38 -0.02 1.76 16 Total: -1.00 -80.19 336.64 3.19 -76.99 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: 0.98 Total: 18.98 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: 7.98 Total: 14.85 kcal Atomic # 7 Polarization: -108.33 SS G_CDS: -5.94 Total: -114.28 kcal Atomic # 8 Polarization: -39.81 SS G_CDS: -1.71 Total: -41.52 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 1.88 Total: 44.97 kcal Total: -80.19 3.19 -76.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332434831.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.209 kcal (2) G-P(sol) polarization free energy of solvation -80.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds