Wall clock time and date at job start Tue Mar 31 2020 03:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36343 * 125.63847 * 2 1 4 4 C 1.34851 * 108.22295 * 180.02562 * 3 2 1 5 5 C 1.40892 * 107.41480 * 0.02562 * 4 3 2 6 6 C 1.34858 * 107.41686 * 359.73710 * 5 4 3 7 7 C 1.50694 * 125.88994 * 180.25251 * 6 5 4 8 8 N 1.46502 * 109.47121 * 95.20019 * 7 6 5 9 9 C 1.34776 * 120.00297 * 179.97438 * 8 7 6 10 10 O 1.21349 * 119.99608 * 0.02562 * 9 8 7 11 11 C 1.49448 * 120.00328 * 180.02562 * 9 8 7 12 12 O 1.21349 * 120.00064 * 0.02562 * 11 9 8 13 13 N 1.34783 * 120.00185 * 180.02562 * 11 9 8 14 14 C 1.46494 * 120.00035 * 180.02562 * 13 11 9 15 15 C 1.52999 * 109.47198 * 179.97438 * 14 13 11 16 16 C 1.52994 * 109.47148 * 179.97438 * 15 14 13 17 17 C 1.50708 * 109.46997 * 179.97438 * 16 15 14 18 18 H 1.08000 * 119.99972 * 359.97438 * 17 16 15 19 19 C 1.37875 * 119.99624 * 180.02562 * 17 16 15 20 20 N 1.31523 * 119.99672 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 120.00396 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47165 * 90.00019 * 21 19 17 23 23 H 1.48502 * 109.47087 * 209.99808 * 21 19 17 24 24 H 1.48498 * 109.47114 * 329.99810 * 21 19 17 25 25 H 1.09002 * 109.47391 * 90.02039 * 1 2 3 26 26 H 1.09001 * 109.46813 * 330.02096 * 1 2 3 27 27 H 1.09004 * 109.47041 * 210.02223 * 1 2 3 28 28 H 1.08001 * 125.88585 * 359.97438 * 3 2 1 29 29 H 1.07993 * 126.29100 * 180.02562 * 4 3 2 30 30 H 1.08001 * 126.29295 * 179.97438 * 5 4 3 31 31 H 1.08998 * 109.46981 * 215.19849 * 7 6 5 32 32 H 1.08999 * 109.47479 * 335.19896 * 7 6 5 33 33 H 0.96998 * 119.99970 * 0.02562 * 8 7 6 34 34 H 0.97000 * 119.99351 * 359.97438 * 13 11 9 35 35 H 1.09011 * 109.46644 * 299.99444 * 14 13 11 36 36 H 1.08999 * 109.47473 * 59.99143 * 14 13 11 37 37 H 1.08998 * 109.46835 * 299.99410 * 15 14 13 38 38 H 1.09003 * 109.46947 * 59.99341 * 15 14 13 39 39 H 1.09006 * 109.47449 * 299.99759 * 16 15 14 40 40 H 1.09003 * 109.47373 * 60.00045 * 16 15 14 41 41 H 0.96997 * 119.99827 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2594 1.1081 0.0000 4 6 3.5461 0.7045 -0.0006 5 6 3.5461 -0.7045 -0.0015 6 6 2.2594 -1.1081 0.0044 7 6 1.7819 -2.5374 0.0111 8 7 1.5132 -2.9560 1.3891 9 6 1.0726 -4.2047 1.6403 10 8 0.8988 -4.9823 0.7250 11 6 0.7980 -4.6316 3.0459 12 8 0.9713 -3.8538 3.9611 13 7 0.3578 -5.8805 3.2972 14 6 0.0881 -6.2988 4.6750 15 6 -0.3971 -7.7498 4.6818 16 6 -0.6782 -8.1868 6.1208 17 6 -1.1567 -9.6159 6.1274 18 1 -1.2512 -10.1580 5.1981 19 6 -1.4746 -10.2308 7.3198 20 7 -1.8927 -11.4778 7.3255 21 14 -1.3131 -9.2925 8.9269 22 1 -2.5930 -8.6021 9.2278 23 1 -0.9925 -10.2409 10.0237 24 1 -0.2255 -8.2886 8.8068 25 1 -0.3634 -0.0004 -1.0277 26 1 -0.3633 0.8902 0.5135 27 1 -0.3633 -0.8898 0.5142 28 1 1.9172 2.1324 -0.0004 29 1 4.4165 1.3437 -0.0003 30 1 4.4166 -1.3437 -0.0026 31 1 0.8682 -2.6180 -0.5778 32 1 2.5500 -3.1791 -0.4204 33 1 1.6518 -2.3343 2.1206 34 1 0.2189 -6.5021 2.5655 35 1 1.0014 -6.2179 5.2646 36 1 -0.6805 -5.6570 5.1057 37 1 -1.3104 -7.8302 4.0924 38 1 0.3712 -8.3918 4.2509 39 1 0.2354 -8.1064 6.7100 40 1 -1.4463 -7.5448 6.5521 41 1 -2.1168 -11.9103 8.1643 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340412682.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:15 Heat of formation + Delta-G solvation = -29.090124 kcal Electronic energy + Delta-G solvation = -22058.882553 eV Core-core repulsion = 18553.613328 eV Total energy + Delta-G solvation = -3505.269225 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.71019 -40.60003 -38.59434 -35.98835 -35.14853 -33.33564 -33.27977 -31.49493 -30.59178 -27.76127 -26.80143 -26.32081 -24.10510 -22.29639 -21.01753 -20.80197 -20.35372 -19.67589 -18.55195 -17.25953 -16.97781 -16.71717 -16.20161 -15.89363 -15.33534 -15.19424 -15.06929 -14.47992 -14.20883 -13.89547 -13.71214 -13.66746 -13.12073 -12.93733 -12.73732 -12.71564 -12.46593 -12.19170 -12.08861 -11.98590 -11.80416 -11.12995 -10.93238 -10.20390 -10.00425 -9.80761 -9.60847 -9.59193 -9.25237 -9.09436 -9.00868 -8.57197 -8.52820 -6.07588 -4.06622 1.32648 1.57378 2.34605 2.50528 2.71310 3.13374 3.29584 3.37396 3.40859 3.65904 4.17295 4.32090 4.42527 4.42985 4.64173 4.68634 4.84131 4.95863 5.15197 5.25040 5.26024 5.32031 5.41965 5.54980 5.83284 5.86593 5.91344 5.93845 6.13617 6.37219 6.51682 6.58513 6.72377 6.77563 6.81867 6.92189 7.18658 7.30165 7.32084 7.62020 7.73616 7.95357 8.48698 8.96448 9.54165 11.05584 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.038210 B = 0.002188 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.620213 B =12795.756410 C =13045.993582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.442 5.442 3 C -0.003 4.003 4 C -0.203 4.203 5 C -0.168 4.168 6 C -0.017 4.017 7 C 0.191 3.809 8 N -0.702 5.702 9 C 0.509 3.491 10 O -0.518 6.518 11 C 0.501 3.499 12 O -0.526 6.526 13 N -0.691 5.691 14 C 0.111 3.889 15 C -0.115 4.115 16 C -0.010 4.010 17 C -0.523 4.523 18 H 0.073 0.927 19 C 0.066 3.934 20 N -0.902 5.902 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.264 1.264 25 H 0.075 0.925 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.164 0.836 29 H 0.138 0.862 30 H 0.139 0.861 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.415 0.585 34 H 0.413 0.587 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.019 0.981 40 H 0.015 0.985 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.447 25.945 -16.638 31.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.118 5.118 3 C -0.134 4.134 4 C -0.228 4.228 5 C -0.194 4.194 6 C -0.127 4.127 7 C 0.068 3.932 8 N -0.357 5.357 9 C 0.289 3.711 10 O -0.394 6.394 11 C 0.281 3.719 12 O -0.403 6.403 13 N -0.343 5.343 14 C -0.011 4.011 15 C -0.153 4.153 16 C -0.048 4.048 17 C -0.561 4.561 18 H 0.091 0.909 19 C -0.135 4.135 20 N -0.541 5.541 21 Si 0.708 3.292 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.189 1.189 25 H 0.094 0.906 26 H 0.105 0.895 27 H 0.102 0.898 28 H 0.181 0.819 29 H 0.156 0.844 30 H 0.157 0.843 31 H 0.095 0.905 32 H 0.114 0.886 33 H 0.251 0.749 34 H 0.249 0.751 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.038 0.962 40 H 0.033 0.967 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.977 25.755 -16.521 31.384 hybrid contribution -0.021 0.457 0.887 0.998 sum 6.955 26.213 -15.634 31.303 Atomic orbital electron populations 1.22084 0.77163 1.04700 1.03480 1.43965 1.06202 1.05676 1.55972 1.21903 0.90587 0.91353 1.09531 1.20931 0.96084 0.95015 1.10758 1.20829 0.95105 0.95346 1.08071 1.20132 0.90741 0.87920 1.13954 1.19704 1.01747 0.88878 0.82869 1.45941 1.66164 1.13648 1.09950 1.20345 0.78244 0.82591 0.89882 1.90778 1.50427 1.52099 1.46051 1.19991 0.79512 0.83560 0.88857 1.90765 1.51358 1.52388 1.45809 1.46018 1.63981 1.12688 1.11575 1.21855 1.01293 0.97774 0.80166 1.21742 1.00908 0.91394 1.01272 1.19506 0.96662 0.97382 0.91295 1.21089 1.44401 0.95588 0.94994 0.90929 1.25039 0.94510 0.94784 0.99201 1.69915 1.45330 1.11810 1.27017 0.86768 0.79063 0.80023 0.83383 1.20265 1.21357 1.18906 0.90650 0.89534 0.89764 0.81901 0.84416 0.84345 0.90457 0.88624 0.74891 0.75115 0.91065 0.91132 0.91818 0.91755 0.96222 0.96695 0.92677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.31 10.80 59.85 0.65 0.96 16 2 N -0.44 -3.17 3.15 -119.90 -0.38 -3.55 16 3 C 0.00 -0.02 11.43 -16.75 -0.19 -0.21 16 4 C -0.20 -1.59 10.86 -39.78 -0.43 -2.02 16 5 C -0.17 -1.43 10.77 -39.78 -0.43 -1.85 16 6 C -0.02 -0.14 6.26 -81.79 -0.51 -0.65 16 7 C 0.19 1.58 5.58 -5.20 -0.03 1.55 16 8 N -0.70 -6.85 5.54 -61.91 -0.34 -7.20 16 9 C 0.51 6.27 7.89 -11.59 -0.09 6.18 16 10 O -0.52 -7.31 16.48 5.50 0.09 -7.22 16 11 C 0.50 7.06 7.89 -11.58 -0.09 6.97 16 12 O -0.53 -8.50 16.48 5.50 0.09 -8.41 16 13 N -0.69 -9.72 5.55 -60.73 -0.34 -10.06 16 14 C 0.11 1.77 5.67 -4.05 -0.02 1.74 16 15 C -0.12 -2.11 5.27 -26.73 -0.14 -2.25 16 16 C -0.01 -0.24 4.04 -27.88 -0.11 -0.35 16 17 C -0.52 -14.62 9.66 -34.44 -0.33 -14.95 16 18 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 19 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 20 N -0.90 -27.62 13.96 55.43 0.77 -26.84 16 21 Si 0.88 21.52 27.47 -169.99 -4.67 16.85 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 24 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 25 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 26 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.08 0.42 7.74 -51.93 -0.40 0.02 16 28 H 0.16 0.68 8.06 -52.49 -0.42 0.26 16 29 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 30 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 31 H 0.08 0.61 7.94 -51.93 -0.41 0.20 16 32 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.41 3.98 7.94 -40.82 -0.32 3.65 16 34 H 0.41 5.32 7.94 -40.82 -0.32 4.99 16 35 H 0.07 1.15 8.14 -51.92 -0.42 0.73 16 36 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 40 H 0.01 0.34 7.57 -51.93 -0.39 -0.06 16 41 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 354.75 15.07 5.35 5.35 Total: -1.00 -33.41 354.75 -7.30 -40.72 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -6.04 Total: 3.45 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: -1.84 Total: -3.08 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: -0.28 Total: -47.65 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: 0.18 Total: -15.63 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.41 -7.30 -40.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340412682.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.628 kcal (2) G-P(sol) polarization free energy of solvation -33.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds