Wall clock time and date at job start Tue Mar 31 2020 03:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36343 * 125.63847 * 2 1 4 4 C 1.34851 * 108.22295 * 180.02562 * 3 2 1 5 5 C 1.40892 * 107.41480 * 0.02562 * 4 3 2 6 6 C 1.34858 * 107.41686 * 359.73710 * 5 4 3 7 7 C 1.50694 * 125.88994 * 180.25251 * 6 5 4 8 8 N 1.46502 * 109.47121 * 95.20019 * 7 6 5 9 9 C 1.34776 * 120.00297 * 179.97438 * 8 7 6 10 10 O 1.21349 * 119.99608 * 0.02562 * 9 8 7 11 11 C 1.49448 * 120.00328 * 180.02562 * 9 8 7 12 12 O 1.21349 * 120.00064 * 0.02562 * 11 9 8 13 13 N 1.34783 * 120.00185 * 180.02562 * 11 9 8 14 14 C 1.46494 * 120.00035 * 180.02562 * 13 11 9 15 15 C 1.52999 * 109.47198 * 179.97438 * 14 13 11 16 16 C 1.52994 * 109.47148 * 179.97438 * 15 14 13 17 17 C 1.50708 * 109.46997 * 179.97438 * 16 15 14 18 18 H 1.08000 * 119.99972 * 359.97438 * 17 16 15 19 19 C 1.37875 * 119.99624 * 180.02562 * 17 16 15 20 20 N 1.31523 * 119.99672 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 120.00396 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47165 * 90.00019 * 21 19 17 23 23 H 1.48502 * 109.47087 * 209.99808 * 21 19 17 24 24 H 1.48498 * 109.47114 * 329.99810 * 21 19 17 25 25 H 1.09002 * 109.47391 * 90.02039 * 1 2 3 26 26 H 1.09001 * 109.46813 * 330.02096 * 1 2 3 27 27 H 1.09004 * 109.47041 * 210.02223 * 1 2 3 28 28 H 1.08001 * 125.88585 * 359.97438 * 3 2 1 29 29 H 1.07993 * 126.29100 * 180.02562 * 4 3 2 30 30 H 1.08001 * 126.29295 * 179.97438 * 5 4 3 31 31 H 1.08998 * 109.46981 * 215.19849 * 7 6 5 32 32 H 1.08999 * 109.47479 * 335.19896 * 7 6 5 33 33 H 0.96998 * 119.99970 * 0.02562 * 8 7 6 34 34 H 0.97000 * 119.99351 * 359.97438 * 13 11 9 35 35 H 1.09011 * 109.46644 * 299.99444 * 14 13 11 36 36 H 1.08999 * 109.47473 * 59.99143 * 14 13 11 37 37 H 1.08998 * 109.46835 * 299.99410 * 15 14 13 38 38 H 1.09003 * 109.46947 * 59.99341 * 15 14 13 39 39 H 1.09006 * 109.47449 * 299.99759 * 16 15 14 40 40 H 1.09003 * 109.47373 * 60.00045 * 16 15 14 41 41 H 0.96997 * 119.99827 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2594 1.1081 0.0000 4 6 3.5461 0.7045 -0.0006 5 6 3.5461 -0.7045 -0.0015 6 6 2.2594 -1.1081 0.0044 7 6 1.7819 -2.5374 0.0111 8 7 1.5132 -2.9560 1.3891 9 6 1.0726 -4.2047 1.6403 10 8 0.8988 -4.9823 0.7250 11 6 0.7980 -4.6316 3.0459 12 8 0.9713 -3.8538 3.9611 13 7 0.3578 -5.8805 3.2972 14 6 0.0881 -6.2988 4.6750 15 6 -0.3971 -7.7498 4.6818 16 6 -0.6782 -8.1868 6.1208 17 6 -1.1567 -9.6159 6.1274 18 1 -1.2512 -10.1580 5.1981 19 6 -1.4746 -10.2308 7.3198 20 7 -1.8927 -11.4778 7.3255 21 14 -1.3131 -9.2925 8.9269 22 1 -2.5930 -8.6021 9.2278 23 1 -0.9925 -10.2409 10.0237 24 1 -0.2255 -8.2886 8.8068 25 1 -0.3634 -0.0004 -1.0277 26 1 -0.3633 0.8902 0.5135 27 1 -0.3633 -0.8898 0.5142 28 1 1.9172 2.1324 -0.0004 29 1 4.4165 1.3437 -0.0003 30 1 4.4166 -1.3437 -0.0026 31 1 0.8682 -2.6180 -0.5778 32 1 2.5500 -3.1791 -0.4204 33 1 1.6518 -2.3343 2.1206 34 1 0.2189 -6.5021 2.5655 35 1 1.0014 -6.2179 5.2646 36 1 -0.6805 -5.6570 5.1057 37 1 -1.3104 -7.8302 4.0924 38 1 0.3712 -8.3918 4.2509 39 1 0.2354 -8.1064 6.7100 40 1 -1.4463 -7.5448 6.5521 41 1 -2.1168 -11.9103 8.1643 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340412682.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:14 Heat of formation + Delta-G solvation = -52.930983 kcal Electronic energy + Delta-G solvation = -22059.916370 eV Core-core repulsion = 18553.613328 eV Total energy + Delta-G solvation = -3506.303042 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.28723 -41.62056 -39.67565 -37.26146 -36.17336 -35.11788 -33.74884 -33.30020 -31.29417 -29.34981 -27.23457 -27.22133 -25.40500 -23.65284 -22.28489 -21.57361 -21.40097 -20.48514 -19.50514 -18.87544 -18.04569 -17.75275 -17.26894 -16.81237 -16.39178 -16.30932 -16.01984 -15.78989 -15.40171 -14.92967 -14.77735 -14.72702 -14.24472 -13.89360 -13.81301 -13.60902 -13.41346 -13.16814 -12.93969 -12.92566 -12.78738 -12.73880 -12.69617 -11.90978 -11.78260 -11.60509 -11.33379 -10.82001 -10.75201 -10.45355 -10.28865 -9.54249 -9.10341 -8.28199 -6.32603 0.27434 0.88459 1.38497 1.40294 1.51397 1.52219 2.03017 2.06400 2.08082 2.37621 2.69533 3.07451 3.38762 3.58480 3.95198 4.01790 4.10544 4.17415 4.34498 4.39373 4.47859 4.49724 4.68167 4.71040 4.77829 4.80963 4.86368 4.99970 5.01955 5.17216 5.32597 5.37690 5.46553 5.55574 5.65162 5.84574 6.02169 6.22930 6.27482 6.28310 6.43472 6.63775 6.75798 6.87053 7.32054 8.88283 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.038210 B = 0.002188 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.620213 B =12795.756410 C =13045.993582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.445 5.445 3 C 0.000 4.000 4 C -0.224 4.224 5 C -0.184 4.184 6 C -0.029 4.029 7 C 0.195 3.805 8 N -0.687 5.687 9 C 0.516 3.484 10 O -0.538 6.538 11 C 0.504 3.496 12 O -0.547 6.547 13 N -0.687 5.687 14 C 0.124 3.876 15 C -0.104 4.104 16 C -0.011 4.011 17 C -0.532 4.532 18 H 0.035 0.965 19 C 0.001 3.999 20 N -0.952 5.952 21 Si 0.951 3.049 22 H -0.267 1.267 23 H -0.286 1.286 24 H -0.244 1.244 25 H 0.087 0.913 26 H 0.104 0.896 27 H 0.078 0.922 28 H 0.191 0.809 29 H 0.148 0.852 30 H 0.140 0.860 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.417 0.583 34 H 0.419 0.581 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.025 0.975 40 H 0.024 0.976 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.696 28.645 -16.496 33.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.120 5.120 3 C -0.132 4.132 4 C -0.249 4.249 5 C -0.210 4.210 6 C -0.140 4.140 7 C 0.072 3.928 8 N -0.340 5.340 9 C 0.296 3.704 10 O -0.415 6.415 11 C 0.284 3.716 12 O -0.425 6.425 13 N -0.340 5.340 14 C 0.001 3.999 15 C -0.142 4.142 16 C -0.049 4.049 17 C -0.570 4.570 18 H 0.053 0.947 19 C -0.195 4.195 20 N -0.592 5.592 21 Si 0.774 3.226 22 H -0.192 1.192 23 H -0.212 1.212 24 H -0.167 1.167 25 H 0.105 0.895 26 H 0.123 0.877 27 H 0.097 0.903 28 H 0.208 0.792 29 H 0.166 0.834 30 H 0.158 0.842 31 H 0.102 0.898 32 H 0.115 0.885 33 H 0.254 0.746 34 H 0.256 0.744 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.043 0.957 40 H 0.042 0.958 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.231 28.487 -16.410 33.661 hybrid contribution -0.096 -0.374 0.740 0.835 sum 7.135 28.113 -15.670 32.966 Atomic orbital electron populations 1.22271 0.75723 1.05368 1.04484 1.44183 1.07176 1.05388 1.55294 1.22387 0.90361 0.92421 1.08017 1.21197 0.97151 0.94932 1.11573 1.21053 0.95500 0.96061 1.08434 1.20087 0.90959 0.88093 1.14911 1.19749 1.02076 0.89154 0.81784 1.45934 1.64587 1.12637 1.10841 1.19968 0.78544 0.83173 0.88715 1.90780 1.51784 1.52784 1.46144 1.20239 0.78784 0.83098 0.89463 1.90755 1.52228 1.52882 1.46608 1.45889 1.63928 1.13051 1.11088 1.21555 1.01293 0.95883 0.81167 1.21521 1.01130 0.93126 0.98467 1.19465 0.96758 0.94325 0.94359 1.21478 1.43943 0.97971 0.93624 0.94700 1.26045 0.94255 0.95708 1.03536 1.70074 1.47094 1.13875 1.28183 0.85648 0.79991 0.78890 0.78067 1.19185 1.21245 1.16720 0.89484 0.87709 0.90302 0.79223 0.83434 0.84181 0.89815 0.88508 0.74607 0.74382 0.90993 0.90830 0.91737 0.91822 0.95689 0.95762 0.92550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.44 10.80 127.77 1.38 1.82 16 2 N -0.45 -5.56 3.15 -533.24 -1.68 -7.24 16 3 C 0.00 0.00 11.43 83.21 0.95 0.95 16 4 C -0.22 -3.23 10.86 22.14 0.24 -2.99 16 5 C -0.18 -2.99 10.77 22.14 0.24 -2.75 16 6 C -0.03 -0.45 6.26 41.08 0.26 -0.19 16 7 C 0.19 2.99 5.58 85.63 0.48 3.46 16 8 N -0.69 -12.50 5.54 -468.15 -2.59 -15.10 16 9 C 0.52 12.05 7.89 87.27 0.69 12.74 16 10 O -0.54 -14.54 16.48 -3.25 -0.05 -14.59 16 11 C 0.50 13.46 7.89 87.27 0.69 14.15 16 12 O -0.55 -16.80 16.48 -3.25 -0.05 -16.85 16 13 N -0.69 -18.31 5.55 -464.41 -2.58 -20.89 16 14 C 0.12 3.70 5.67 86.38 0.49 4.19 16 15 C -0.10 -3.71 5.27 30.59 0.16 -3.55 16 16 C -0.01 -0.49 4.04 29.85 0.12 -0.37 16 17 C -0.53 -30.08 9.66 25.60 0.25 -29.84 16 18 H 0.03 2.16 7.99 -2.91 -0.02 2.14 16 19 C 0.00 0.07 5.47 84.65 0.46 0.53 16 20 N -0.95 -59.51 13.96 21.45 0.30 -59.21 16 21 Si 0.95 43.77 27.47 68.60 1.88 45.65 16 22 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 23 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 24 H -0.24 -10.33 6.54 99.48 0.65 -9.68 16 25 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 26 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 27 H 0.08 0.65 7.74 -2.38 -0.02 0.63 16 28 H 0.19 1.04 8.06 -2.91 -0.02 1.01 16 29 H 0.15 1.68 8.06 -2.91 -0.02 1.65 16 30 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 31 H 0.08 1.20 7.94 -2.39 -0.02 1.18 16 32 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.42 7.44 7.94 -92.71 -0.74 6.70 16 34 H 0.42 10.25 7.94 -92.71 -0.74 9.52 16 35 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 36 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.02 1.09 7.20 -2.38 -0.02 1.07 16 40 H 0.02 1.04 7.57 -2.39 -0.02 1.02 16 41 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -71.62 354.75 1.15 -70.47 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: -0.48 Total: 19.61 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: 6.40 Total: -1.85 kcal Atomic # 7 Polarization: -95.88 SS G_CDS: -6.55 Total: -102.43 kcal Atomic # 8 Polarization: -31.34 SS G_CDS: -0.11 Total: -31.44 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 1.88 Total: 45.65 kcal Total: -71.62 1.15 -70.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340412682.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.537 kcal (2) G-P(sol) polarization free energy of solvation -71.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds