Wall clock time and date at job start Tue Mar 31 2020 03:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47164 * 2 1 4 4 N 1.46496 * 109.47336 * 120.00251 * 2 1 3 5 5 C 1.34812 * 126.59770 * 274.70952 * 4 2 1 6 6 C 1.36593 * 106.84106 * 179.90742 * 5 4 2 7 7 C 1.47523 * 125.76823 * 180.13566 * 6 5 4 8 8 O 1.21595 * 120.00264 * 7.25251 * 7 6 5 9 9 N 1.34783 * 119.99864 * 187.25415 * 7 6 5 10 10 C 1.46963 * 120.59267 * 7.04014 * 9 7 6 11 11 C 1.53813 * 108.39605 * 124.76125 * 10 9 7 12 12 N 1.46969 * 108.57667 * 49.64056 * 11 10 9 13 13 C 1.36929 * 120.59631 * 124.67083 * 12 11 10 14 14 H 1.08004 * 120.00207 * 221.64983 * 13 12 11 15 15 C 1.38813 * 120.00197 * 41.64328 * 13 12 11 16 16 N 1.31624 * 119.99694 * 7.09348 * 15 13 12 17 17 Si 1.86799 * 120.00490 * 187.08457 * 15 13 12 18 18 H 1.48503 * 109.47159 * 90.00052 * 17 15 13 19 19 H 1.48493 * 109.47643 * 210.00275 * 17 15 13 20 20 H 1.48507 * 109.46941 * 330.00640 * 17 15 13 21 21 C 1.46969 * 118.81261 * 304.64293 * 12 11 10 22 22 C 1.46962 * 120.59234 * 187.32784 * 9 7 6 23 23 N 1.34398 * 108.46068 * 0.36448 * 6 5 4 24 24 N 1.28766 * 109.52273 * 359.77115 * 23 6 5 25 25 H 1.08998 * 109.47398 * 59.99509 * 1 2 3 26 26 H 1.09004 * 109.46670 * 299.99666 * 1 2 3 27 27 H 1.09000 * 109.47534 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46670 * 240.00334 * 2 1 3 29 29 H 1.09004 * 109.47055 * 60.00569 * 3 2 1 30 30 H 1.09000 * 109.47263 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47364 * 300.00512 * 3 2 1 32 32 H 1.08001 * 126.57641 * 0.04104 * 5 4 2 33 33 H 1.09001 * 109.61196 * 244.54745 * 10 9 7 34 34 H 1.08995 * 109.61044 * 5.05805 * 10 9 7 35 35 H 1.08993 * 109.74132 * 289.85095 * 11 10 9 36 36 H 1.09000 * 109.52956 * 169.30034 * 11 10 9 37 37 H 0.97001 * 119.99933 * 179.97438 * 16 15 13 38 38 H 1.09003 * 109.60996 * 295.48933 * 21 12 11 39 39 H 1.08993 * 109.75284 * 175.05787 * 21 12 11 40 40 H 1.09003 * 109.61038 * 354.94579 * 22 9 7 41 41 H 1.09009 * 109.61171 * 115.45537 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.2025 -0.1502 2.4173 6 6 2.6649 -1.1489 3.2264 7 6 3.0022 -1.0138 4.6562 8 8 2.7527 0.0205 5.2447 9 7 3.5872 -2.0370 5.3101 10 6 4.0345 -3.2323 4.5815 11 6 5.5260 -3.4554 4.8839 12 7 5.7222 -3.3983 6.3393 13 6 6.3164 -4.4378 7.0038 14 1 5.9234 -4.7660 7.9547 15 6 7.4239 -5.0697 6.4551 16 7 7.9878 -4.5843 5.3693 17 14 8.1140 -6.6089 7.2577 18 1 7.4542 -7.8070 6.6795 19 1 9.5766 -6.6822 7.0117 20 1 7.8598 -6.5611 8.7200 21 6 5.2698 -2.2053 7.0688 22 6 3.7834 -1.9799 6.7655 23 7 2.7652 -2.2743 2.4985 24 7 2.3899 -2.0394 1.2893 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.6767 1.9563 0.8901 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9563 -0.8899 32 1 2.0177 0.8751 2.7019 33 1 3.4585 -4.0976 4.9095 34 1 3.8953 -3.0816 3.5110 35 1 6.1193 -2.6772 4.4040 36 1 5.8309 -4.4334 4.5118 37 1 8.7619 -5.0257 4.9861 38 1 5.8450 -1.3381 6.7443 39 1 5.4061 -2.3548 8.1398 40 1 3.4783 -1.0018 7.1376 41 1 3.1899 -2.7581 7.2455 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340567842.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:22 Heat of formation + Delta-G solvation = 100.484926 kcal Electronic energy + Delta-G solvation = -23905.072715 eV Core-core repulsion = 20437.715037 eV Total energy + Delta-G solvation = -3467.357678 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.25255 -39.23094 -36.72477 -36.62504 -33.74697 -31.78600 -31.41146 -30.61461 -29.86823 -27.90707 -26.88648 -24.57112 -23.91399 -22.74570 -22.44427 -20.93392 -20.50651 -19.01051 -17.56369 -16.53342 -16.13637 -15.84140 -15.58157 -15.02832 -14.79280 -14.60553 -14.45911 -13.68377 -13.57306 -13.51213 -13.26913 -13.08662 -13.04065 -12.83664 -12.28972 -12.19983 -12.05040 -11.85087 -11.56177 -11.36344 -10.85610 -10.72903 -10.56899 -10.40431 -10.39000 -10.13390 -9.90778 -9.78434 -9.32348 -9.21277 -8.46727 -8.11984 -6.41872 -5.77251 -3.37925 1.15789 1.86387 1.92231 3.38237 3.43794 3.45263 3.47045 3.60649 3.97214 4.25284 4.28355 4.47485 4.49424 4.71729 4.89788 4.93170 5.04095 5.11518 5.14164 5.33683 5.41348 5.44049 5.57567 5.58448 5.74521 5.98833 6.06369 6.17318 6.27726 6.33898 6.46861 6.59698 6.74254 6.92383 7.10221 7.36007 7.54639 7.82468 7.91724 8.08629 8.54924 8.57049 9.23522 9.80440 10.47060 11.28844 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.027605 B = 0.003675 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.053994 B = 7616.265001 C = 8208.637768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.144 3.856 3 C -0.169 4.169 4 N -0.358 5.358 5 C 0.088 3.912 6 C -0.087 4.087 7 C 0.594 3.406 8 O -0.561 6.561 9 N -0.577 5.577 10 C 0.057 3.943 11 C 0.166 3.834 12 N -0.590 5.590 13 C -0.264 4.264 14 H 0.061 0.939 15 C 0.016 3.984 16 N -0.897 5.897 17 Si 0.904 3.096 18 H -0.285 1.285 19 H -0.290 1.290 20 H -0.277 1.277 21 C 0.133 3.867 22 C 0.095 3.905 23 N -0.197 5.197 24 N -0.072 5.072 25 H 0.083 0.917 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.113 0.887 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.200 0.800 33 H 0.060 0.940 34 H 0.117 0.883 35 H 0.022 0.978 36 H 0.084 0.916 37 H 0.255 0.745 38 H 0.023 0.977 39 H 0.066 0.934 40 H 0.082 0.918 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.379 11.170 -11.699 21.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.042 3.958 3 C -0.227 4.227 4 N -0.144 5.144 5 C -0.069 4.069 6 C -0.226 4.226 7 C 0.379 3.621 8 O -0.440 6.440 9 N -0.307 5.307 10 C -0.067 4.067 11 C 0.040 3.960 12 N -0.313 5.313 13 C -0.394 4.394 14 H 0.078 0.922 15 C -0.184 4.184 16 N -0.539 5.539 17 Si 0.733 3.267 18 H -0.212 1.212 19 H -0.216 1.216 20 H -0.203 1.203 21 C 0.006 3.994 22 C -0.029 4.029 23 N -0.069 5.069 24 N -0.051 5.051 25 H 0.102 0.898 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.131 0.869 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.106 0.894 32 H 0.217 0.783 33 H 0.078 0.922 34 H 0.134 0.866 35 H 0.040 0.960 36 H 0.103 0.897 37 H 0.065 0.935 38 H 0.041 0.959 39 H 0.085 0.915 40 H 0.100 0.900 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.202 10.311 -12.269 21.414 hybrid contribution 0.388 0.063 0.697 0.800 sum -13.814 10.374 -11.573 20.794 Atomic orbital electron populations 1.22253 0.92641 1.03828 1.03683 1.21597 0.95550 0.93396 0.85207 1.22267 1.02831 0.93398 1.04246 1.50710 1.44810 1.09831 1.09074 1.23176 0.98151 1.00958 0.84587 1.21563 1.13319 0.90359 0.97346 1.16857 0.78129 0.83624 0.83457 1.90730 1.57287 1.28275 1.67738 1.47869 1.56156 1.17915 1.08719 1.23519 0.99156 0.85518 0.98522 1.21145 0.88628 1.01274 0.85000 1.43860 1.69489 1.15164 1.02807 1.19070 1.06729 1.08596 1.04997 0.92185 1.25465 0.95605 0.99549 0.97823 1.69970 1.22314 1.39634 1.22002 0.86293 0.78069 0.83039 0.79303 1.21215 1.21641 1.20252 1.21306 0.90562 0.90707 0.96808 1.22298 0.99909 1.01689 0.79025 1.74539 1.10894 1.22990 0.98513 1.82022 1.17962 0.91693 1.13395 0.89820 0.91482 0.91219 0.86860 0.91059 0.90996 0.89412 0.78344 0.92156 0.86571 0.95958 0.89743 0.93482 0.95936 0.91520 0.89973 0.91789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.86 9.52 37.16 0.35 -0.51 16 2 C 0.14 0.94 3.96 -67.93 -0.27 0.68 16 3 C -0.17 -0.78 8.84 37.15 0.33 -0.45 16 4 N -0.36 -4.00 3.54 -54.57 -0.19 -4.19 16 5 C 0.09 1.08 10.41 -16.84 -0.18 0.91 16 6 C -0.09 -1.43 6.70 -83.55 -0.56 -1.99 16 7 C 0.59 11.31 7.67 -12.47 -0.10 11.22 16 8 O -0.56 -11.33 16.29 5.28 0.09 -11.24 16 9 N -0.58 -11.58 2.94 -173.44 -0.51 -12.09 16 10 C 0.06 1.19 6.31 -3.37 -0.02 1.17 16 11 C 0.17 4.09 5.43 -3.36 -0.02 4.07 16 12 N -0.59 -15.21 2.89 -171.76 -0.50 -15.71 16 13 C -0.26 -7.30 9.45 -15.06 -0.14 -7.44 16 14 H 0.06 1.63 7.84 -52.48 -0.41 1.22 16 15 C 0.02 0.45 5.08 -17.43 -0.09 0.36 16 16 N -0.90 -26.29 11.63 55.49 0.65 -25.65 16 17 Si 0.90 21.69 29.56 -169.99 -5.02 16.67 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 21 C 0.13 2.95 6.67 -3.59 -0.02 2.93 16 22 C 0.09 1.85 6.60 -3.60 -0.02 1.82 16 23 N -0.20 -3.35 8.77 32.84 0.29 -3.07 16 24 N -0.07 -1.08 13.79 60.35 0.83 -0.24 16 25 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.31 7.22 -51.93 -0.38 -0.07 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.20 1.84 7.34 -52.49 -0.39 1.45 16 33 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.12 2.32 4.03 -87.22 -0.35 1.96 16 35 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 2.26 6.73 -51.93 -0.35 1.91 16 37 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.07 1.40 7.94 -51.93 -0.41 0.99 16 40 H 0.08 1.52 6.99 -51.93 -0.36 1.16 16 41 H 0.06 1.20 8.14 -51.92 -0.42 0.78 16 LS Contribution 335.21 15.07 5.05 5.05 Total: -1.00 -33.60 335.21 -6.07 -39.67 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -6.01 Total: -1.96 kcal Atomic # 6 Polarization: 13.50 SS G_CDS: -0.74 Total: 12.77 kcal Atomic # 7 Polarization: -61.51 SS G_CDS: 0.56 Total: -60.95 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.09 Total: -11.24 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.60 -6.07 -39.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340567842.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.151 kcal (2) G-P(sol) polarization free energy of solvation -33.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds