Wall clock time and date at job start Tue Mar 31 2020 03:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47164 * 2 1 4 4 N 1.46496 * 109.47336 * 120.00251 * 2 1 3 5 5 C 1.34812 * 126.59770 * 274.70952 * 4 2 1 6 6 C 1.36593 * 106.84106 * 179.90742 * 5 4 2 7 7 C 1.47523 * 125.76823 * 180.13566 * 6 5 4 8 8 O 1.21595 * 120.00264 * 7.25251 * 7 6 5 9 9 N 1.34783 * 119.99864 * 187.25415 * 7 6 5 10 10 C 1.46963 * 120.59267 * 7.04014 * 9 7 6 11 11 C 1.53813 * 108.39605 * 124.76125 * 10 9 7 12 12 N 1.46969 * 108.57667 * 49.64056 * 11 10 9 13 13 C 1.36929 * 120.59631 * 124.67083 * 12 11 10 14 14 H 1.08004 * 120.00207 * 221.64983 * 13 12 11 15 15 C 1.38813 * 120.00197 * 41.64328 * 13 12 11 16 16 N 1.31624 * 119.99694 * 7.09348 * 15 13 12 17 17 Si 1.86799 * 120.00490 * 187.08457 * 15 13 12 18 18 H 1.48503 * 109.47159 * 90.00052 * 17 15 13 19 19 H 1.48493 * 109.47643 * 210.00275 * 17 15 13 20 20 H 1.48507 * 109.46941 * 330.00640 * 17 15 13 21 21 C 1.46969 * 118.81261 * 304.64293 * 12 11 10 22 22 C 1.46962 * 120.59234 * 187.32784 * 9 7 6 23 23 N 1.34398 * 108.46068 * 0.36448 * 6 5 4 24 24 N 1.28766 * 109.52273 * 359.77115 * 23 6 5 25 25 H 1.08998 * 109.47398 * 59.99509 * 1 2 3 26 26 H 1.09004 * 109.46670 * 299.99666 * 1 2 3 27 27 H 1.09000 * 109.47534 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46670 * 240.00334 * 2 1 3 29 29 H 1.09004 * 109.47055 * 60.00569 * 3 2 1 30 30 H 1.09000 * 109.47263 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47364 * 300.00512 * 3 2 1 32 32 H 1.08001 * 126.57641 * 0.04104 * 5 4 2 33 33 H 1.09001 * 109.61196 * 244.54745 * 10 9 7 34 34 H 1.08995 * 109.61044 * 5.05805 * 10 9 7 35 35 H 1.08993 * 109.74132 * 289.85095 * 11 10 9 36 36 H 1.09000 * 109.52956 * 169.30034 * 11 10 9 37 37 H 0.97001 * 119.99933 * 179.97438 * 16 15 13 38 38 H 1.09003 * 109.60996 * 295.48933 * 21 12 11 39 39 H 1.08993 * 109.75284 * 175.05787 * 21 12 11 40 40 H 1.09003 * 109.61038 * 354.94579 * 22 9 7 41 41 H 1.09009 * 109.61171 * 115.45537 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.2025 -0.1502 2.4173 6 6 2.6649 -1.1489 3.2264 7 6 3.0022 -1.0138 4.6562 8 8 2.7527 0.0205 5.2447 9 7 3.5872 -2.0370 5.3101 10 6 4.0345 -3.2323 4.5815 11 6 5.5260 -3.4554 4.8839 12 7 5.7222 -3.3983 6.3393 13 6 6.3164 -4.4378 7.0038 14 1 5.9234 -4.7660 7.9547 15 6 7.4239 -5.0697 6.4551 16 7 7.9878 -4.5843 5.3693 17 14 8.1140 -6.6089 7.2577 18 1 7.4542 -7.8070 6.6795 19 1 9.5766 -6.6822 7.0117 20 1 7.8598 -6.5611 8.7200 21 6 5.2698 -2.2053 7.0688 22 6 3.7834 -1.9799 6.7655 23 7 2.7652 -2.2743 2.4985 24 7 2.3899 -2.0394 1.2893 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.6767 1.9563 0.8901 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9563 -0.8899 32 1 2.0177 0.8751 2.7019 33 1 3.4585 -4.0976 4.9095 34 1 3.8953 -3.0816 3.5110 35 1 6.1193 -2.6772 4.4040 36 1 5.8309 -4.4334 4.5118 37 1 8.7619 -5.0257 4.9861 38 1 5.8450 -1.3381 6.7443 39 1 5.4061 -2.3548 8.1398 40 1 3.4783 -1.0018 7.1376 41 1 3.1899 -2.7581 7.2455 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340567842.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:21 Heat of formation + Delta-G solvation = 77.829681 kcal Electronic energy + Delta-G solvation = -23906.055120 eV Core-core repulsion = 20437.715037 eV Total energy + Delta-G solvation = -3468.340083 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.34805 -40.76455 -38.37799 -37.45029 -35.57849 -33.36174 -32.51423 -32.22127 -31.39972 -28.74802 -28.26322 -25.97798 -25.30455 -24.28046 -24.03245 -22.10341 -21.76175 -20.52410 -19.03796 -17.98643 -17.47827 -17.19208 -16.93277 -16.62341 -16.02558 -15.86711 -15.47809 -15.39410 -15.21811 -15.10345 -14.78596 -14.29097 -13.91506 -13.61091 -13.52403 -13.28220 -13.16665 -13.06070 -12.73055 -12.54574 -12.50246 -12.42289 -12.20480 -12.11436 -12.02215 -11.71272 -11.52245 -11.30179 -10.92538 -10.56337 -10.38146 -9.77627 -8.48900 -7.87527 -5.54183 0.14529 0.57329 1.08034 1.48248 1.48888 1.58552 1.97598 2.20705 2.49760 3.08902 3.27974 3.32305 3.63430 3.66952 3.81637 3.92205 4.01991 4.20280 4.24146 4.27312 4.43945 4.46402 4.62274 4.64128 4.67196 4.71992 4.78596 4.83097 4.89104 5.02895 5.14056 5.17807 5.21905 5.33507 5.49055 5.52433 5.63527 5.65112 6.39845 6.43835 6.83623 7.10613 7.13486 7.75040 8.38197 9.15716 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.027605 B = 0.003675 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.053994 B = 7616.265001 C = 8208.637768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.132 3.868 3 C -0.166 4.166 4 N -0.340 5.340 5 C 0.113 3.887 6 C -0.121 4.121 7 C 0.596 3.404 8 O -0.573 6.573 9 N -0.589 5.589 10 C 0.078 3.922 11 C 0.177 3.823 12 N -0.608 5.608 13 C -0.276 4.276 14 H 0.065 0.935 15 C -0.037 4.037 16 N -0.932 5.932 17 Si 0.973 3.027 18 H -0.282 1.282 19 H -0.294 1.294 20 H -0.265 1.265 21 C 0.133 3.867 22 C 0.105 3.895 23 N -0.226 5.226 24 N -0.090 5.090 25 H 0.113 0.887 26 H 0.067 0.933 27 H 0.052 0.948 28 H 0.121 0.879 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.116 0.884 32 H 0.234 0.766 33 H 0.060 0.940 34 H 0.129 0.871 35 H -0.007 1.007 36 H 0.056 0.944 37 H 0.252 0.748 38 H 0.007 0.993 39 H 0.077 0.923 40 H 0.096 0.904 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.111 12.399 -12.371 23.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.033 3.967 3 C -0.224 4.224 4 N -0.126 5.126 5 C -0.045 4.045 6 C -0.261 4.261 7 C 0.384 3.616 8 O -0.454 6.454 9 N -0.319 5.319 10 C -0.047 4.047 11 C 0.051 3.949 12 N -0.332 5.332 13 C -0.406 4.406 14 H 0.083 0.917 15 C -0.234 4.234 16 N -0.575 5.575 17 Si 0.800 3.200 18 H -0.208 1.208 19 H -0.220 1.220 20 H -0.190 1.190 21 C 0.007 3.993 22 C -0.019 4.019 23 N -0.099 5.099 24 N -0.069 5.069 25 H 0.132 0.868 26 H 0.086 0.914 27 H 0.072 0.928 28 H 0.139 0.861 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.134 0.866 32 H 0.250 0.750 33 H 0.078 0.922 34 H 0.146 0.854 35 H 0.011 0.989 36 H 0.074 0.926 37 H 0.061 0.939 38 H 0.025 0.975 39 H 0.095 0.905 40 H 0.114 0.886 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.971 11.556 -12.962 23.593 hybrid contribution 0.852 -0.173 0.791 1.175 sum -15.119 11.383 -12.171 22.501 Atomic orbital electron populations 1.22257 0.91118 1.03259 1.05253 1.22161 0.96680 0.94340 0.83532 1.22308 1.02127 0.91858 1.06071 1.51114 1.42765 1.08649 1.10042 1.23590 0.95510 1.01367 0.84044 1.21428 1.16228 0.91800 0.96638 1.17127 0.77200 0.82829 0.84456 1.90706 1.57758 1.28439 1.68449 1.47900 1.56994 1.18075 1.08883 1.23192 0.95949 0.86048 0.99472 1.20889 0.90887 0.98599 0.84566 1.44116 1.69818 1.16041 1.03195 1.19411 1.06808 1.09183 1.05173 0.91749 1.26251 0.96024 1.02698 0.98402 1.70136 1.22751 1.41146 1.23471 0.85213 0.76790 0.79200 0.78835 1.20805 1.22008 1.18998 1.21384 0.92134 0.88774 0.96995 1.22157 0.97769 1.02738 0.79232 1.74380 1.12113 1.24005 0.99355 1.81918 1.18629 0.93870 1.12456 0.86804 0.91357 0.92841 0.86078 0.90298 0.92106 0.86577 0.75005 0.92200 0.85416 0.98861 0.92557 0.93871 0.97450 0.90482 0.88599 0.90809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 9.52 71.98 0.69 -0.49 16 2 C 0.13 1.36 3.96 44.99 0.18 1.53 16 3 C -0.17 -0.93 8.84 71.98 0.64 -0.29 16 4 N -0.34 -6.94 3.54 -326.55 -1.16 -8.10 16 5 C 0.11 2.55 10.41 83.85 0.87 3.42 16 6 C -0.12 -3.90 6.70 40.82 0.27 -3.63 16 7 C 0.60 22.38 7.67 86.69 0.67 23.04 16 8 O -0.57 -22.43 16.29 -4.01 -0.07 -22.50 16 9 N -0.59 -23.63 2.94 -820.90 -2.41 -26.04 16 10 C 0.08 3.31 6.31 86.57 0.55 3.86 16 11 C 0.18 9.09 5.43 86.56 0.47 9.56 16 12 N -0.61 -32.04 2.89 -697.34 -2.02 -34.06 16 13 C -0.28 -15.44 9.45 84.03 0.79 -14.64 16 14 H 0.06 3.49 7.84 -2.91 -0.02 3.47 16 15 C -0.04 -2.08 5.08 84.86 0.43 -1.65 16 16 N -0.93 -56.23 11.63 21.65 0.25 -55.98 16 17 Si 0.97 45.08 29.56 68.60 2.03 47.11 16 18 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 19 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 20 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 21 C 0.13 5.97 6.67 86.42 0.58 6.54 16 22 C 0.10 4.03 6.60 86.42 0.57 4.60 16 23 N -0.23 -7.71 8.77 -50.00 -0.44 -8.14 16 24 N -0.09 -2.63 13.79 37.02 0.51 -2.12 16 25 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 26 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 27 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.12 1.11 8.14 -2.38 -0.02 1.09 16 29 H 0.08 0.36 7.22 -2.38 -0.02 0.34 16 30 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.12 0.06 8.14 -2.39 -0.02 0.04 16 32 H 0.23 3.49 7.34 -2.91 -0.02 3.46 16 33 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.13 5.23 4.03 -48.05 -0.19 5.03 16 35 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 36 H 0.06 3.17 6.73 -2.39 -0.02 3.15 16 37 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 38 H 0.01 0.35 8.14 -2.39 -0.02 0.34 16 39 H 0.08 3.23 7.94 -2.39 -0.02 3.21 16 40 H 0.10 3.44 6.99 -2.39 -0.02 3.42 16 41 H 0.07 2.70 8.14 -2.38 -0.02 2.68 16 Total: -1.00 -74.27 335.21 4.25 -70.03 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: 0.85 Total: 7.93 kcal Atomic # 6 Polarization: 25.17 SS G_CDS: 6.70 Total: 31.87 kcal Atomic # 7 Polarization: -129.18 SS G_CDS: -5.27 Total: -134.44 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -0.07 Total: -22.50 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -74.27 4.25 -70.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340567842.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.857 kcal (2) G-P(sol) polarization free energy of solvation -74.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds