Wall clock time and date at job start Tue Mar 31 2020 03:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.40093 * 126.03238 * 2 1 4 4 C 1.30843 * 108.20280 * 180.02562 * 3 2 1 5 5 C 1.39872 * 108.20393 * 359.77459 * 4 3 2 6 6 C 1.34946 * 126.04416 * 180.02562 * 2 1 3 7 7 C 1.50705 * 126.12070 * 359.93943 * 6 2 1 8 8 O 1.42906 * 109.46659 * 180.02562 * 7 6 2 9 9 C 1.42898 * 113.99804 * 180.02562 * 8 7 6 10 10 C 1.50698 * 109.47246 * 180.02562 * 9 8 7 11 11 O 1.21278 * 119.99759 * 5.32865 * 10 9 8 12 12 N 1.34780 * 119.99810 * 185.33393 * 10 9 8 13 13 C 1.46499 * 119.99650 * 185.07137 * 12 10 9 14 14 C 1.53003 * 109.47294 * 183.90600 * 13 12 10 15 15 C 1.50701 * 115.54667 * 294.93563 * 14 13 12 16 16 H 1.08004 * 120.00057 * 114.84849 * 15 14 13 17 17 C 1.37876 * 120.00194 * 294.56752 * 15 14 13 18 18 N 1.31513 * 120.00198 * 174.41802 * 17 15 14 19 19 Si 1.86804 * 119.99573 * 354.41760 * 17 15 14 20 20 H 1.48495 * 109.47262 * 93.26752 * 19 17 15 21 21 H 1.48508 * 109.46920 * 213.26812 * 19 17 15 22 22 H 1.48494 * 109.47337 * 333.26481 * 19 17 15 23 23 C 1.52998 * 117.49798 * 80.60016 * 14 13 12 24 24 C 1.52995 * 117.49983 * 149.26281 * 14 13 12 25 25 H 1.09002 * 109.46994 * 269.97531 * 1 2 3 26 26 H 1.09001 * 109.47351 * 29.97626 * 1 2 3 27 27 H 1.09008 * 109.46667 * 149.97810 * 1 2 3 28 28 H 1.07994 * 125.89802 * 180.02562 * 4 3 2 29 29 H 1.07997 * 126.04479 * 180.23750 * 5 4 3 30 30 H 1.08998 * 109.46813 * 60.00704 * 7 6 2 31 31 H 1.08997 * 109.47147 * 300.00082 * 7 6 2 32 32 H 1.09004 * 109.47419 * 59.99615 * 9 8 7 33 33 H 1.09004 * 109.46974 * 299.99929 * 9 8 7 34 34 H 0.96999 * 120.00072 * 5.07588 * 12 10 9 35 35 H 1.08998 * 109.47271 * 63.90629 * 13 12 10 36 36 H 1.08997 * 109.47522 * 303.90619 * 13 12 10 37 37 H 0.97001 * 119.99371 * 180.02562 * 18 17 15 38 38 H 1.09001 * 117.50089 * 215.01014 * 23 14 13 39 39 H 1.09004 * 117.49770 * 0.02671 * 23 14 13 40 40 H 1.09000 * 117.50311 * 359.97438 * 24 14 13 41 41 H 1.09001 * 117.49823 * 144.97769 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2890 1.1329 0.0000 4 6 3.5346 0.7323 -0.0006 5 6 3.5438 -0.6664 0.0043 6 6 2.2590 -1.0911 -0.0005 7 6 1.7974 -2.5258 0.0002 8 8 2.9342 -3.3918 -0.0001 9 6 2.6053 -4.7824 -0.0001 10 6 3.8724 -5.5982 0.0003 11 8 4.9483 -5.0472 0.0981 12 7 3.8098 -6.9402 -0.1081 13 6 5.0310 -7.7418 0.0037 14 6 4.7001 -9.2136 -0.2515 15 6 3.7936 -9.8614 0.7632 16 1 2.8107 -10.2005 0.4707 17 6 4.2210 -10.0264 2.0636 18 7 3.3930 -10.4901 2.9741 19 14 5.9762 -9.5914 2.5321 20 1 6.0236 -8.1931 3.0296 21 1 6.4468 -10.5123 3.5979 22 1 6.8535 -9.7231 1.3413 23 6 4.5684 -9.6659 -1.7072 24 6 5.7890 -10.0832 -0.8831 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3634 0.8902 -0.5135 27 1 -0.3633 -0.8899 -0.5142 28 1 4.4053 1.3712 -0.0003 29 1 4.4211 -1.2961 0.0087 30 1 1.1964 -2.7144 -0.8893 31 1 1.1978 -2.7141 0.8906 32 1 2.0215 -5.0178 -0.8899 33 1 2.0218 -5.0178 0.8900 34 1 2.9563 -7.3752 -0.2603 35 1 5.4477 -7.6314 1.0048 36 1 5.7586 -7.4001 -0.7324 37 1 3.6937 -10.6058 3.8890 38 1 3.8260 -10.4320 -1.9310 39 1 4.7178 -8.9150 -2.4830 40 1 6.7410 -9.6068 -1.1172 41 1 5.8499 -11.1238 -0.5644 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341662968.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:31 Heat of formation + Delta-G solvation = 29.520983 kcal Electronic energy + Delta-G solvation = -22772.099160 eV Core-core repulsion = 19269.371503 eV Total energy + Delta-G solvation = -3502.727657 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.35853 -39.42904 -37.76876 -36.85539 -33.54953 -33.47636 -32.23636 -31.45932 -28.70966 -26.97928 -26.60131 -25.83147 -24.66658 -21.70049 -21.24030 -20.25826 -19.92194 -19.26504 -17.47749 -16.85884 -16.72052 -16.61622 -15.88059 -15.62697 -15.10697 -15.00064 -14.59360 -14.30498 -13.98120 -13.76601 -13.38914 -13.12709 -12.92863 -12.72905 -12.66585 -12.59965 -12.29652 -11.97601 -11.70911 -11.11460 -10.84641 -10.76075 -10.63981 -10.31333 -10.08359 -9.68433 -9.40747 -9.39584 -9.19541 -8.84265 -8.61089 -8.55639 -8.36540 -6.23042 -4.26400 1.65412 2.15764 2.75130 2.98713 3.03475 3.26210 3.36434 3.41982 3.99100 4.31813 4.34742 4.48425 4.76079 4.79705 4.84934 4.96429 4.98921 5.04619 5.08947 5.13867 5.19150 5.27369 5.54288 5.63191 5.66276 5.92387 6.08512 6.10195 6.18450 6.40023 6.45178 6.56931 6.66695 6.71550 6.86650 6.88545 7.01372 7.10431 7.53700 7.61745 8.07220 8.35268 8.67260 8.77935 9.40655 10.87757 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.024913 B = 0.002938 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.620744 B = 9528.509087 C = 9613.748136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.374 5.374 3 N -0.297 5.297 4 C 0.044 3.956 5 C -0.239 4.239 6 C 0.074 3.926 7 C 0.129 3.871 8 O -0.349 6.349 9 C 0.045 3.955 10 C 0.508 3.492 11 O -0.535 6.535 12 N -0.700 5.700 13 C 0.156 3.844 14 C -0.019 4.019 15 C -0.492 4.492 16 H 0.078 0.922 17 C 0.084 3.916 18 N -0.892 5.892 19 Si 0.865 3.135 20 H -0.277 1.277 21 H -0.291 1.291 22 H -0.248 1.248 23 C -0.180 4.180 24 C -0.184 4.184 25 H 0.075 0.925 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.185 0.815 29 H 0.157 0.843 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.407 0.593 35 H 0.058 0.942 36 H 0.051 0.949 37 H 0.266 0.734 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.380 15.496 -7.094 18.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.160 5.160 3 N -0.119 5.119 4 C -0.141 4.141 5 C -0.268 4.268 6 C -0.052 4.052 7 C 0.050 3.950 8 O -0.267 6.267 9 C -0.035 4.035 10 C 0.292 3.708 11 O -0.412 6.412 12 N -0.351 5.351 13 C 0.033 3.967 14 C -0.020 4.020 15 C -0.529 4.529 16 H 0.096 0.904 17 C -0.120 4.120 18 N -0.529 5.529 19 Si 0.692 3.308 20 H -0.203 1.203 21 H -0.218 1.218 22 H -0.172 1.172 23 C -0.217 4.217 24 C -0.222 4.222 25 H 0.093 0.907 26 H 0.108 0.892 27 H 0.104 0.896 28 H 0.202 0.798 29 H 0.175 0.825 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.242 0.758 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.104 0.896 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.369 16.891 -6.801 19.290 hybrid contribution 0.706 -0.887 0.437 1.215 sum -5.662 16.004 -6.364 18.130 Atomic orbital electron populations 1.21863 0.74496 1.04457 1.03437 1.48373 1.06368 1.02939 1.58274 1.77360 1.02039 1.07254 1.25228 1.23926 0.95127 0.95303 0.99788 1.21409 0.97011 0.94516 1.13850 1.20540 0.91953 0.89421 1.03334 1.20584 0.88551 0.84561 1.01269 1.88003 1.28838 1.14312 1.95497 1.22286 0.96457 0.81792 1.02925 1.20029 0.90222 0.82860 0.77715 1.90695 1.30127 1.71242 1.49155 1.45713 1.12520 1.04930 1.71953 1.21096 0.85094 0.90334 1.00225 1.19610 0.99092 0.90237 0.93059 1.20232 1.01273 1.39367 0.92005 0.90377 1.24915 0.97181 0.93781 0.96125 1.69888 1.35221 1.45099 1.02647 0.87049 0.86250 0.78275 0.79227 1.20319 1.21754 1.17152 1.22808 1.01250 1.03247 0.94430 1.23035 0.92273 1.01016 1.05922 0.90665 0.89182 0.89629 0.79821 0.82542 0.91300 0.91172 0.90218 0.89648 0.75789 0.92437 0.93068 0.92410 0.89594 0.90858 0.91047 0.89254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.63 11.27 59.84 0.67 1.30 16 2 N -0.37 -4.18 4.01 -63.88 -0.26 -4.44 16 3 N -0.30 -3.83 12.58 30.62 0.39 -3.44 16 4 C 0.04 0.52 12.03 -17.36 -0.21 0.32 16 5 C -0.24 -3.15 10.14 -40.01 -0.41 -3.55 16 6 C 0.07 0.89 6.91 -82.26 -0.57 0.32 16 7 C 0.13 1.30 5.90 36.01 0.21 1.52 16 8 O -0.35 -4.88 9.18 -55.09 -0.51 -5.38 16 9 C 0.05 0.57 6.42 36.00 0.23 0.81 16 10 C 0.51 9.00 7.90 -10.98 -0.09 8.92 16 11 O -0.54 -11.73 16.50 -14.30 -0.24 -11.97 16 12 N -0.70 -12.60 5.48 -60.30 -0.33 -12.93 16 13 C 0.16 3.23 5.15 -4.04 -0.02 3.21 16 14 C -0.02 -0.40 0.84 -155.66 -0.13 -0.53 16 15 C -0.49 -12.45 9.16 -34.44 -0.32 -12.76 16 16 H 0.08 2.13 8.06 -52.48 -0.42 1.71 16 17 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 18 N -0.89 -25.62 13.96 55.43 0.77 -24.85 16 19 Si 0.86 20.80 24.97 -169.99 -4.25 16.56 16 20 H -0.28 -6.82 7.02 56.52 0.40 -6.42 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.25 -5.61 5.73 56.52 0.32 -5.28 16 23 C -0.18 -3.31 9.96 -26.69 -0.27 -3.58 16 24 C -0.18 -3.65 8.03 -26.69 -0.21 -3.86 16 25 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.09 0.35 7.79 -51.92 -0.40 -0.06 16 28 H 0.18 1.58 8.06 -52.49 -0.42 1.15 16 29 H 0.16 2.19 7.85 -52.49 -0.41 1.77 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.41 6.58 8.34 -40.82 -0.34 6.24 16 35 H 0.06 1.33 5.05 -51.93 -0.26 1.07 16 36 H 0.05 1.03 8.07 -51.93 -0.42 0.61 16 37 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 38 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 39 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.09 1.82 8.14 -51.93 -0.42 1.39 16 LS Contribution 348.65 15.07 5.25 5.25 Total: -1.00 -34.05 348.65 -6.49 -40.54 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -6.13 Total: 6.40 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: -1.20 Total: -5.75 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: 0.57 Total: -45.66 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -0.74 Total: -17.35 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.25 Total: 16.56 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.05 -6.49 -40.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341662968.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.061 kcal (2) G-P(sol) polarization free energy of solvation -34.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds