Wall clock time and date at job start Tue Mar 31 2020 03:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36345 * 125.63310 * 2 1 4 4 C 1.34848 * 108.21855 * 180.02562 * 3 2 1 5 5 C 1.40895 * 107.41714 * 359.97438 * 4 3 2 6 6 C 1.50698 * 126.29128 * 180.02562 * 5 4 3 7 7 N 1.46507 * 109.47026 * 89.97965 * 6 5 4 8 8 C 1.34775 * 119.99878 * 180.02562 * 7 6 5 9 9 O 1.21348 * 120.00274 * 359.97438 * 8 7 6 10 10 C 1.49449 * 119.99794 * 179.97438 * 8 7 6 11 11 O 1.21348 * 119.99932 * 0.02562 * 10 8 7 12 12 N 1.34775 * 120.00221 * 179.97438 * 10 8 7 13 13 C 1.46496 * 120.00214 * 179.97438 * 12 10 8 14 14 C 1.53004 * 109.46916 * 180.02562 * 13 12 10 15 15 C 1.53006 * 109.46785 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.46804 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00693 * 359.97438 * 16 15 14 18 18 C 1.37886 * 120.00127 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99297 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00081 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47260 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47124 * 120.00291 * 20 18 16 23 23 H 1.48501 * 109.46880 * 239.99970 * 20 18 16 24 24 C 1.34844 * 107.41841 * 0.02562 * 5 4 3 25 25 H 1.08997 * 109.47501 * 269.97463 * 1 2 3 26 26 H 1.09004 * 109.47331 * 29.98008 * 1 2 3 27 27 H 1.09002 * 109.46732 * 149.97633 * 1 2 3 28 28 H 1.08001 * 125.88962 * 0.05572 * 3 2 1 29 29 H 1.07999 * 126.29387 * 180.26704 * 4 3 2 30 30 H 1.08991 * 109.47528 * 209.97807 * 6 5 4 31 31 H 1.09004 * 109.47059 * 329.98194 * 6 5 4 32 32 H 0.97001 * 119.99756 * 359.97438 * 7 6 5 33 33 H 0.97001 * 119.99939 * 0.02562 * 12 10 8 34 34 H 1.08998 * 109.47706 * 300.00592 * 13 12 10 35 35 H 1.09004 * 109.46786 * 60.00948 * 13 12 10 36 36 H 1.09002 * 109.47225 * 299.99787 * 14 13 12 37 37 H 1.09000 * 109.47490 * 60.00343 * 14 13 12 38 38 H 1.08994 * 109.46957 * 299.99602 * 15 14 13 39 39 H 1.08992 * 109.47495 * 59.99900 * 15 14 13 40 40 H 0.97006 * 120.00030 * 180.02562 * 19 18 16 41 41 H 1.07994 * 125.89572 * 180.02562 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2593 1.1082 0.0000 4 6 3.5460 0.7046 -0.0006 5 6 3.5461 -0.7044 -0.0003 6 6 4.7608 -1.5963 -0.0003 7 7 5.1547 -1.8847 1.3811 8 6 6.2232 -2.6684 1.6274 9 8 6.8586 -3.1355 0.7051 10 6 6.6254 -2.9621 3.0365 11 8 5.9897 -2.4953 3.9587 12 7 7.6935 -3.7462 3.2829 13 6 8.0881 -4.0337 4.6641 14 6 9.3216 -4.9389 4.6642 15 6 9.7333 -5.2396 6.1068 16 6 10.9479 -6.1317 6.1069 17 1 11.3825 -6.4526 5.1717 18 6 11.5045 -6.5385 7.3011 19 7 10.9750 -6.1483 8.4399 20 14 13.0095 -7.6449 7.3012 21 1 13.4067 -7.9405 5.9012 22 1 14.1272 -6.9602 7.9993 23 1 12.6908 -8.9140 8.0032 24 6 2.2595 -1.1081 -0.0002 25 1 -0.3634 -0.0005 1.0276 26 1 -0.3634 0.8902 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 1.9171 2.1325 0.0009 29 1 4.4165 1.3438 0.0033 30 1 4.5268 -2.5289 -0.5135 31 1 5.5803 -1.0941 -0.5145 32 1 4.6470 -1.5109 2.1183 33 1 8.2014 -4.1196 2.5457 34 1 8.3224 -3.1007 5.1768 35 1 7.2688 -4.5354 5.1791 36 1 9.0876 -5.8719 4.1516 37 1 10.1408 -4.4369 4.1494 38 1 9.9672 -4.3068 6.6198 39 1 8.9142 -5.7417 6.6214 40 1 11.3667 -6.4341 9.2801 41 1 1.9173 -2.1324 0.0004 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343152915.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:18 Heat of formation + Delta-G solvation = -33.165826 kcal Electronic energy + Delta-G solvation = -21693.861366 eV Core-core repulsion = 18188.415405 eV Total energy + Delta-G solvation = -3505.445961 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.60360 -40.41507 -38.39813 -35.84698 -35.17824 -33.35369 -32.97566 -31.20103 -29.86318 -28.05078 -27.10498 -25.57550 -23.92948 -22.30335 -20.75210 -20.71801 -20.31409 -19.80819 -18.38368 -17.23996 -16.78386 -16.30602 -15.97191 -15.72432 -15.27890 -14.93012 -14.84721 -14.43663 -14.36988 -13.99130 -13.63021 -13.40409 -13.20284 -12.99420 -12.76391 -12.29393 -12.22878 -11.96059 -11.85181 -11.74386 -11.59089 -10.91131 -10.72637 -10.56007 -9.87190 -9.76008 -9.36830 -9.31353 -9.10374 -8.91840 -8.90804 -8.53625 -8.36323 -6.00915 -4.03637 1.53784 1.77935 2.27116 2.52590 2.85235 3.31700 3.34049 3.39225 3.43395 3.91324 4.25015 4.45917 4.60417 4.62646 4.63663 4.72460 4.85795 4.88940 5.03072 5.35163 5.40508 5.52602 5.64622 5.73911 5.74705 6.04501 6.12655 6.13693 6.34315 6.56026 6.58312 6.75141 6.78651 6.93850 6.98774 7.07795 7.52133 7.64565 7.76252 7.84892 7.97937 8.14821 8.39355 9.03203 9.60630 11.10417 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.047571 B = 0.001949 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.454058 B =14364.625192 C =14654.606705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.452 5.452 3 C -0.018 4.018 4 C -0.180 4.180 5 C -0.193 4.193 6 C 0.194 3.806 7 N -0.697 5.697 8 C 0.506 3.494 9 O -0.524 6.524 10 C 0.500 3.500 11 O -0.528 6.528 12 N -0.692 5.692 13 C 0.114 3.886 14 C -0.123 4.123 15 C 0.024 3.976 16 C -0.521 4.521 17 H 0.057 0.943 18 C 0.056 3.944 19 N -0.894 5.894 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.012 3.988 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.163 0.837 29 H 0.138 0.862 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.413 0.587 33 H 0.411 0.589 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.020 0.980 39 H 0.020 0.980 40 H 0.260 0.740 41 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.860 13.846 -19.222 32.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.127 5.127 3 C -0.147 4.147 4 C -0.205 4.205 5 C -0.200 4.200 6 C 0.071 3.929 7 N -0.351 5.351 8 C 0.287 3.713 9 O -0.400 6.400 10 C 0.280 3.720 11 O -0.404 6.404 12 N -0.344 5.344 13 C -0.008 4.008 14 C -0.161 4.161 15 C -0.014 4.014 16 C -0.560 4.560 17 H 0.075 0.925 18 C -0.145 4.145 19 N -0.533 5.533 20 Si 0.721 3.279 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.120 4.120 25 H 0.093 0.907 26 H 0.102 0.898 27 H 0.102 0.898 28 H 0.180 0.820 29 H 0.156 0.844 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.249 0.751 33 H 0.247 0.753 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.070 0.930 41 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -22.222 13.833 -19.034 32.364 hybrid contribution 0.724 -0.537 0.153 0.914 sum -21.499 13.296 -18.881 31.551 Atomic orbital electron populations 1.22053 0.77051 1.04395 1.03447 1.44014 1.06330 1.06195 1.56152 1.21853 0.90390 0.91551 1.10904 1.20869 0.96196 0.94280 1.09143 1.19368 0.93092 0.94227 1.13333 1.19580 0.93677 0.97575 0.82034 1.45962 1.29714 1.49544 1.09875 1.20328 0.81395 0.79767 0.89820 1.90754 1.52805 1.50727 1.45759 1.20069 0.82208 0.80667 0.89092 1.90754 1.53059 1.51079 1.45558 1.46062 1.28871 1.48363 1.11122 1.21828 0.98677 1.00458 0.79868 1.21927 0.94177 0.97462 1.02507 1.19040 0.96511 0.97071 0.88785 1.21252 1.12324 1.30006 0.92401 0.92497 1.25034 0.97403 0.96421 0.95663 1.69977 1.40720 1.45360 0.97262 0.86515 0.82853 0.80420 0.78082 1.19721 1.21012 1.21026 1.21750 0.89998 0.91656 1.08633 0.90740 0.89803 0.89776 0.82006 0.84391 0.90729 0.90407 0.75051 0.75320 0.91149 0.91160 0.92436 0.92417 0.96181 0.96197 0.93002 0.81873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.20 11.12 59.85 0.67 0.87 16 2 N -0.45 -2.90 3.15 -124.53 -0.39 -3.29 16 3 C -0.02 -0.13 11.43 -16.75 -0.19 -0.32 16 4 C -0.18 -1.51 10.81 -39.78 -0.43 -1.94 16 5 C -0.19 -1.68 5.50 -104.82 -0.58 -2.26 16 6 C 0.19 1.86 6.17 -5.19 -0.03 1.83 16 7 N -0.70 -7.85 5.54 -61.91 -0.34 -8.19 16 8 C 0.51 7.04 7.89 -11.59 -0.09 6.95 16 9 O -0.52 -8.20 16.48 5.50 0.09 -8.11 16 10 C 0.50 7.82 7.89 -11.59 -0.09 7.73 16 11 O -0.53 -9.35 16.48 5.50 0.09 -9.26 16 12 N -0.69 -10.78 5.55 -60.73 -0.34 -11.12 16 13 C 0.11 2.01 5.67 -4.04 -0.02 1.98 16 14 C -0.12 -2.43 5.27 -26.73 -0.14 -2.57 16 15 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 16 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 17 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.89 -26.85 13.29 55.43 0.74 -26.11 16 20 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 C 0.01 0.09 11.35 -16.75 -0.19 -0.10 16 25 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 26 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 27 H 0.08 0.14 8.14 -51.93 -0.42 -0.29 16 28 H 0.16 0.71 8.06 -52.49 -0.42 0.29 16 29 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.41 4.50 7.94 -40.82 -0.32 4.18 16 33 H 0.41 5.85 7.94 -40.82 -0.32 5.53 16 34 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 41 H 0.16 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 359.65 15.07 5.42 5.42 Total: -1.00 -33.91 359.65 -7.52 -41.43 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -6.11 Total: 3.44 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -1.65 Total: -0.83 kcal Atomic # 7 Polarization: -48.38 SS G_CDS: -0.34 Total: -48.71 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: 0.18 Total: -17.37 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.91 -7.52 -41.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343152915.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.263 kcal (2) G-P(sol) polarization free energy of solvation -33.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds