Wall clock time and date at job start Tue Mar 31 2020 03:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36345 * 125.63310 * 2 1 4 4 C 1.34848 * 108.21855 * 180.02562 * 3 2 1 5 5 C 1.40895 * 107.41714 * 359.97438 * 4 3 2 6 6 C 1.50698 * 126.29128 * 180.02562 * 5 4 3 7 7 N 1.46507 * 109.47026 * 89.97965 * 6 5 4 8 8 C 1.34775 * 119.99878 * 180.02562 * 7 6 5 9 9 O 1.21348 * 120.00274 * 359.97438 * 8 7 6 10 10 C 1.49449 * 119.99794 * 179.97438 * 8 7 6 11 11 O 1.21348 * 119.99932 * 0.02562 * 10 8 7 12 12 N 1.34775 * 120.00221 * 179.97438 * 10 8 7 13 13 C 1.46496 * 120.00214 * 179.97438 * 12 10 8 14 14 C 1.53004 * 109.46916 * 180.02562 * 13 12 10 15 15 C 1.53006 * 109.46785 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.46804 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00693 * 359.97438 * 16 15 14 18 18 C 1.37886 * 120.00127 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99297 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00081 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47260 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47124 * 120.00291 * 20 18 16 23 23 H 1.48501 * 109.46880 * 239.99970 * 20 18 16 24 24 C 1.34844 * 107.41841 * 0.02562 * 5 4 3 25 25 H 1.08997 * 109.47501 * 269.97463 * 1 2 3 26 26 H 1.09004 * 109.47331 * 29.98008 * 1 2 3 27 27 H 1.09002 * 109.46732 * 149.97633 * 1 2 3 28 28 H 1.08001 * 125.88962 * 0.05572 * 3 2 1 29 29 H 1.07999 * 126.29387 * 180.26704 * 4 3 2 30 30 H 1.08991 * 109.47528 * 209.97807 * 6 5 4 31 31 H 1.09004 * 109.47059 * 329.98194 * 6 5 4 32 32 H 0.97001 * 119.99756 * 359.97438 * 7 6 5 33 33 H 0.97001 * 119.99939 * 0.02562 * 12 10 8 34 34 H 1.08998 * 109.47706 * 300.00592 * 13 12 10 35 35 H 1.09004 * 109.46786 * 60.00948 * 13 12 10 36 36 H 1.09002 * 109.47225 * 299.99787 * 14 13 12 37 37 H 1.09000 * 109.47490 * 60.00343 * 14 13 12 38 38 H 1.08994 * 109.46957 * 299.99602 * 15 14 13 39 39 H 1.08992 * 109.47495 * 59.99900 * 15 14 13 40 40 H 0.97006 * 120.00030 * 180.02562 * 19 18 16 41 41 H 1.07994 * 125.89572 * 180.02562 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2593 1.1082 0.0000 4 6 3.5460 0.7046 -0.0006 5 6 3.5461 -0.7044 -0.0003 6 6 4.7608 -1.5963 -0.0003 7 7 5.1547 -1.8847 1.3811 8 6 6.2232 -2.6684 1.6274 9 8 6.8586 -3.1355 0.7051 10 6 6.6254 -2.9621 3.0365 11 8 5.9897 -2.4953 3.9587 12 7 7.6935 -3.7462 3.2829 13 6 8.0881 -4.0337 4.6641 14 6 9.3216 -4.9389 4.6642 15 6 9.7333 -5.2396 6.1068 16 6 10.9479 -6.1317 6.1069 17 1 11.3825 -6.4526 5.1717 18 6 11.5045 -6.5385 7.3011 19 7 10.9750 -6.1483 8.4399 20 14 13.0095 -7.6449 7.3012 21 1 13.4067 -7.9405 5.9012 22 1 14.1272 -6.9602 7.9993 23 1 12.6908 -8.9140 8.0032 24 6 2.2595 -1.1081 -0.0002 25 1 -0.3634 -0.0005 1.0276 26 1 -0.3634 0.8902 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 1.9171 2.1325 0.0009 29 1 4.4165 1.3438 0.0033 30 1 4.5268 -2.5289 -0.5135 31 1 5.5803 -1.0941 -0.5145 32 1 4.6470 -1.5109 2.1183 33 1 8.2014 -4.1196 2.5457 34 1 8.3224 -3.1007 5.1768 35 1 7.2688 -4.5354 5.1791 36 1 9.0876 -5.8719 4.1516 37 1 10.1408 -4.4369 4.1494 38 1 9.9672 -4.3068 6.6198 39 1 8.9142 -5.7417 6.6214 40 1 11.3667 -6.4341 9.2801 41 1 1.9173 -2.1324 0.0004 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343152915.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:17 Heat of formation + Delta-G solvation = -56.630608 kcal Electronic energy + Delta-G solvation = -21694.878875 eV Core-core repulsion = 18188.415405 eV Total energy + Delta-G solvation = -3506.463470 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.15486 -41.58169 -39.61482 -37.21772 -36.28076 -35.17992 -33.61029 -33.02132 -30.51955 -29.06868 -28.38532 -26.48934 -25.30438 -23.73217 -22.35477 -21.36940 -21.24509 -20.67771 -19.46938 -18.52052 -17.91813 -17.76638 -17.20135 -16.68436 -16.39819 -16.20717 -16.07954 -15.85950 -15.19349 -14.93696 -14.76076 -14.31352 -14.26767 -13.77673 -13.76146 -13.51278 -13.47276 -13.12016 -12.84983 -12.77789 -12.76982 -12.61641 -12.53888 -12.36304 -11.69344 -11.55461 -11.21207 -10.74465 -10.54784 -10.32416 -10.22758 -9.48570 -9.09444 -8.18935 -6.29691 0.34193 1.09694 1.42378 1.42653 1.46780 1.56073 1.99810 2.13263 2.14100 2.42740 2.82714 3.15011 3.48280 3.95023 4.09877 4.12574 4.19463 4.19650 4.34066 4.44369 4.48423 4.53829 4.71671 4.75571 4.85705 4.88408 4.92785 5.15621 5.16546 5.21678 5.24933 5.47004 5.52764 5.71747 5.85337 5.93228 5.99628 6.23885 6.24922 6.37474 6.49363 6.73480 6.87469 6.94271 7.39612 8.93195 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.047571 B = 0.001949 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.454058 B =14364.625192 C =14654.606705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.452 5.452 3 C -0.018 4.018 4 C -0.207 4.207 5 C -0.213 4.213 6 C 0.197 3.803 7 N -0.682 5.682 8 C 0.512 3.488 9 O -0.543 6.543 10 C 0.502 3.498 11 O -0.550 6.550 12 N -0.686 5.686 13 C 0.127 3.873 14 C -0.106 4.106 15 C 0.024 3.976 16 C -0.541 4.541 17 H 0.064 0.936 18 C -0.003 4.003 19 N -0.933 5.933 20 Si 0.966 3.034 21 H -0.261 1.261 22 H -0.280 1.280 23 H -0.280 1.280 24 C 0.008 3.992 25 H 0.081 0.919 26 H 0.100 0.900 27 H 0.097 0.903 28 H 0.186 0.814 29 H 0.137 0.863 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.416 0.584 33 H 0.419 0.581 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.067 0.933 38 H -0.004 1.004 39 H -0.003 1.003 40 H 0.263 0.737 41 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.589 13.834 -20.720 33.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.126 5.126 3 C -0.148 4.148 4 C -0.231 4.231 5 C -0.220 4.220 6 C 0.075 3.925 7 N -0.334 5.334 8 C 0.293 3.707 9 O -0.421 6.421 10 C 0.282 3.718 11 O -0.428 6.428 12 N -0.339 5.339 13 C 0.004 3.996 14 C -0.144 4.144 15 C -0.014 4.014 16 C -0.579 4.579 17 H 0.083 0.917 18 C -0.200 4.200 19 N -0.574 5.574 20 Si 0.791 3.209 21 H -0.185 1.185 22 H -0.205 1.205 23 H -0.205 1.205 24 C -0.125 4.125 25 H 0.099 0.901 26 H 0.119 0.881 27 H 0.115 0.885 28 H 0.203 0.797 29 H 0.155 0.845 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.253 0.747 33 H 0.257 0.743 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.015 0.985 39 H 0.015 0.985 40 H 0.072 0.928 41 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -22.986 13.838 -20.566 33.805 hybrid contribution 0.842 -0.463 0.612 1.139 sum -22.144 13.375 -19.954 32.671 Atomic orbital electron populations 1.22322 0.74855 1.05951 1.04365 1.44304 1.07728 1.05661 1.54937 1.22247 0.90101 0.92770 1.09632 1.21042 0.97122 0.94366 1.10555 1.19352 0.93259 0.94330 1.15083 1.19634 0.94130 0.98022 0.80711 1.46022 1.28446 1.48009 1.10930 1.19936 0.81993 0.80281 0.88530 1.90751 1.53676 1.51894 1.45751 1.20380 0.81652 0.79960 0.89784 1.90744 1.53730 1.51882 1.46466 1.45878 1.29110 1.48459 1.10410 1.21477 0.97538 0.99575 0.81019 1.21645 0.95342 0.98538 0.98854 1.18944 0.95223 0.95314 0.91892 1.21716 1.13129 1.30272 0.92828 0.91748 1.25994 1.00736 0.98007 0.95283 1.70108 1.42475 1.46774 0.97994 0.85377 0.78690 0.78211 0.78621 1.18451 1.20533 1.20531 1.22039 0.89873 0.92751 1.07854 0.90085 0.88139 0.88481 0.79673 0.84526 0.90226 0.90809 0.74732 0.74308 0.91811 0.91736 0.91408 0.91447 0.98525 0.98497 0.92804 0.80285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.20 11.12 127.77 1.42 1.62 16 2 N -0.45 -4.92 3.15 -547.90 -1.72 -6.65 16 3 C -0.02 -0.22 11.43 83.21 0.95 0.73 16 4 C -0.21 -3.33 10.81 22.14 0.24 -3.09 16 5 C -0.21 -3.54 5.50 -19.99 -0.11 -3.65 16 6 C 0.20 3.65 6.17 85.63 0.53 4.18 16 7 N -0.68 -14.88 5.54 -468.14 -2.59 -17.48 16 8 C 0.51 13.88 7.89 87.27 0.69 14.57 16 9 O -0.54 -16.50 16.48 -3.24 -0.05 -16.55 16 10 C 0.50 15.40 7.89 87.27 0.69 16.09 16 11 O -0.55 -19.34 16.48 -3.24 -0.05 -19.39 16 12 N -0.69 -20.85 5.55 -464.41 -2.58 -23.42 16 13 C 0.13 4.46 5.67 86.38 0.49 4.95 16 14 C -0.11 -4.15 5.27 30.60 0.16 -3.99 16 15 C 0.02 1.24 4.97 29.85 0.15 1.39 16 16 C -0.54 -30.45 9.11 25.60 0.23 -30.21 16 17 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 18 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 19 N -0.93 -56.86 13.29 21.45 0.28 -56.58 16 20 Si 0.97 44.21 29.54 68.60 2.03 46.24 16 21 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 22 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 23 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 24 C 0.01 0.11 11.35 83.21 0.94 1.05 16 25 H 0.08 0.18 8.14 -2.39 -0.02 0.16 16 26 H 0.10 -0.01 8.14 -2.38 -0.02 -0.03 16 27 H 0.10 0.06 8.14 -2.39 -0.02 0.04 16 28 H 0.19 1.22 8.06 -2.91 -0.02 1.20 16 29 H 0.14 2.09 8.06 -2.91 -0.02 2.06 16 30 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.07 1.43 8.14 -2.38 -0.02 1.42 16 32 H 0.42 8.80 7.94 -92.71 -0.74 8.06 16 33 H 0.42 11.43 7.94 -92.71 -0.74 10.70 16 34 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 36 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 37 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 38 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 39 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 40 H 0.26 15.04 8.31 -92.70 -0.77 14.27 16 41 H 0.18 1.67 8.06 -2.91 -0.02 1.65 16 Total: -1.00 -72.27 359.65 1.73 -70.54 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: -0.43 Total: 19.33 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: 6.85 Total: 3.96 kcal Atomic # 7 Polarization: -97.51 SS G_CDS: -6.61 Total: -104.12 kcal Atomic # 8 Polarization: -35.83 SS G_CDS: -0.11 Total: -35.94 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -72.27 1.73 -70.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343152915.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.911 kcal (2) G-P(sol) polarization free energy of solvation -72.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds