Wall clock time and date at job start Tue Mar 31 2020 02:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46507 * 109.47541 * 2 1 4 4 C 1.36446 * 124.84873 * 90.02186 * 3 2 1 5 5 C 1.50701 * 125.57172 * 359.96731 * 4 3 2 6 6 C 1.34484 * 108.85343 * 179.97438 * 4 3 2 7 7 C 1.46691 * 106.33575 * 0.02562 * 6 4 3 8 8 C 1.47256 * 126.94066 * 179.97438 * 7 6 4 9 9 O 1.21628 * 120.00065 * 180.02562 * 8 7 6 10 10 N 1.34777 * 120.00270 * 0.02562 * 8 7 6 11 11 C 1.46506 * 119.99873 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.46928 * 179.97438 * 11 10 8 13 13 O 1.21297 * 119.99980 * 359.97438 * 12 11 10 14 14 N 1.34779 * 120.00037 * 179.97438 * 12 11 10 15 15 C 1.37097 * 119.99944 * 179.97438 * 14 12 11 16 16 H 1.08003 * 120.00055 * 0.02562 * 15 14 12 17 17 C 1.38948 * 119.99682 * 180.02562 * 15 14 12 18 18 N 1.31416 * 120.00213 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99894 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47229 * 90.00155 * 19 17 15 21 21 H 1.48500 * 109.47256 * 210.00069 * 19 17 15 22 22 H 1.48506 * 109.46930 * 329.99910 * 19 17 15 23 23 C 1.34654 * 124.85030 * 270.29404 * 3 2 1 24 24 C 1.50697 * 125.80521 * 0.05759 * 23 3 2 25 25 H 1.09002 * 109.46887 * 59.99228 * 1 2 3 26 26 H 1.08988 * 109.47592 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46950 * 300.00383 * 1 2 3 28 28 H 1.09009 * 109.47064 * 240.00149 * 2 1 3 29 29 H 1.08999 * 109.47197 * 120.00073 * 2 1 3 30 30 H 1.09003 * 109.46800 * 269.99403 * 5 4 3 31 31 H 1.08997 * 109.47364 * 29.99113 * 5 4 3 32 32 H 1.09003 * 109.47163 * 149.99746 * 5 4 3 33 33 H 1.08003 * 126.82966 * 179.97438 * 6 4 3 34 34 H 0.96999 * 120.00047 * 359.97438 * 10 8 7 35 35 H 1.09004 * 109.47073 * 299.99562 * 11 10 8 36 36 H 1.09000 * 109.47212 * 59.99645 * 11 10 8 37 37 H 0.96996 * 119.99844 * 0.02562 * 14 12 11 38 38 H 0.97002 * 120.00016 * 180.02562 * 18 17 15 39 39 H 1.08999 * 109.47312 * 270.16159 * 24 23 3 40 40 H 1.09002 * 109.47250 * 30.16204 * 24 23 3 41 41 H 1.09006 * 109.47289 * 150.16160 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2788 2.1162 1.1198 5 6 2.1102 1.6401 2.5396 6 6 2.7102 3.3348 0.7492 7 6 2.7123 3.3433 -0.7177 8 6 3.1061 4.4580 -1.5957 9 8 3.0584 4.3266 -2.8039 10 7 3.5193 5.6239 -1.0605 11 6 3.9104 6.7330 -1.9341 12 6 4.3280 7.9117 -1.0930 13 8 4.3009 7.8332 0.1171 14 7 4.7314 9.0531 -1.6854 15 6 5.1107 10.1256 -0.9202 16 1 5.0866 10.0557 0.1573 17 6 5.5261 11.3025 -1.5309 18 7 5.5549 11.3878 -2.8420 19 14 6.0436 12.7636 -0.4883 20 1 7.5008 12.6842 -0.2135 21 1 5.7453 14.0224 -1.2175 22 1 5.2961 12.7457 0.7947 23 6 2.2696 2.1086 -1.1050 24 6 2.0951 1.6408 -2.5269 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3634 -1.0275 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8901 29 1 1.8933 -0.5138 0.8900 30 1 1.1009 1.8685 2.8820 31 1 2.2738 0.5634 2.5837 32 1 2.8340 2.1441 3.1802 33 1 2.9971 4.1461 1.4018 34 1 3.5570 5.7289 -0.0969 35 1 4.7439 6.4226 -2.5644 36 1 3.0658 7.0163 -2.5621 37 1 4.7526 9.1161 -2.6530 38 1 5.8452 12.2093 -3.2683 39 1 3.0207 1.1820 -2.8746 40 1 1.2878 0.9098 -2.5725 41 1 1.8506 2.4922 -3.1621 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343509713.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:41 Heat of formation + Delta-G solvation = -41.670210 kcal Electronic energy + Delta-G solvation = -22824.932516 eV Core-core repulsion = 19319.117777 eV Total energy + Delta-G solvation = -3505.814738 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.54932 -39.04811 -37.87376 -34.36861 -34.27329 -33.53138 -32.69687 -31.31408 -29.75295 -29.25948 -27.52843 -25.07347 -24.26442 -23.65850 -21.63362 -19.79849 -19.56846 -18.67462 -17.92609 -17.02617 -16.11980 -15.57572 -15.44304 -15.06020 -14.94478 -14.80336 -14.30718 -13.88762 -13.70093 -13.56338 -13.38698 -13.22597 -13.19348 -12.98245 -12.61467 -12.47926 -12.22974 -12.05551 -11.86955 -11.70680 -11.63686 -11.58082 -11.37571 -11.07763 -10.41552 -10.26281 -9.57537 -9.50855 -8.72552 -8.54409 -8.47318 -8.03677 -7.95766 -6.45617 -3.87284 1.85740 2.38567 2.64349 3.15994 3.25542 3.30987 3.73699 3.78883 3.89147 4.17902 4.30205 4.52050 4.60168 4.74369 4.80729 4.98739 5.04116 5.14788 5.17027 5.22899 5.23217 5.35413 5.44058 5.56881 5.58590 5.68722 5.72336 5.91528 5.97424 6.04734 6.09288 6.16902 6.31355 6.83123 6.91844 7.08622 7.21795 7.51622 7.98853 8.10965 8.52332 8.74574 9.10906 9.46565 9.94995 10.71505 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.032937 B = 0.002775 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.900988 B =10086.641568 C =10810.751889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.095 3.905 3 N -0.439 5.439 4 C 0.005 3.995 5 C -0.081 4.081 6 C -0.161 4.161 7 C -0.227 4.227 8 C 0.589 3.411 9 O -0.562 6.562 10 N -0.704 5.704 11 C 0.111 3.889 12 C 0.430 3.570 13 O -0.596 6.596 14 N -0.552 5.552 15 C -0.303 4.303 16 H 0.105 0.895 17 C 0.024 3.976 18 N -0.896 5.896 19 Si 0.933 3.067 20 H -0.277 1.277 21 H -0.283 1.283 22 H -0.269 1.269 23 C 0.102 3.898 24 C -0.092 4.092 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.147 0.853 34 H 0.410 0.590 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.396 0.604 38 H 0.273 0.727 39 H 0.074 0.926 40 H 0.059 0.941 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.595 -22.846 4.819 24.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.027 4.027 3 N -0.117 5.117 4 C -0.102 4.102 5 C -0.139 4.139 6 C -0.185 4.185 7 C -0.237 4.237 8 C 0.378 3.622 9 O -0.444 6.444 10 N -0.357 5.357 11 C -0.017 4.017 12 C 0.216 3.784 13 O -0.483 6.483 14 N -0.187 5.187 15 C -0.433 4.433 16 H 0.123 0.877 17 C -0.178 4.178 18 N -0.537 5.537 19 Si 0.759 3.241 20 H -0.203 1.203 21 H -0.208 1.208 22 H -0.193 1.193 23 C -0.014 4.014 24 C -0.149 4.149 25 H 0.083 0.917 26 H 0.092 0.908 27 H 0.083 0.917 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.100 0.900 33 H 0.165 0.835 34 H 0.248 0.752 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.230 0.770 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.689 -23.106 4.683 25.126 hybrid contribution 0.349 0.933 0.342 1.054 sum -8.340 -22.172 5.025 24.216 Atomic orbital electron populations 1.22169 0.94282 1.02907 1.03443 1.21836 0.95629 0.80870 1.04334 1.43593 1.51366 1.11651 1.05103 1.20144 1.08755 0.92703 0.88567 1.20304 1.02845 1.00886 0.89822 1.21894 1.06439 0.96817 0.93311 1.20087 1.15561 0.94822 0.93210 1.17295 0.76494 0.81491 0.86953 1.90696 1.56100 1.82925 1.14640 1.45480 1.66598 1.12088 1.11499 1.20913 1.01073 0.86778 0.92922 1.19801 0.85167 0.84750 0.88665 1.90491 1.60392 1.83163 1.14229 1.41797 1.56408 1.10756 1.09696 1.19727 1.40800 0.89969 0.92770 0.87719 1.25316 0.97241 0.99241 0.96009 1.69621 1.46992 1.28758 1.08294 0.85821 0.78949 0.79800 0.79494 1.20310 1.20846 1.19342 1.20212 1.01199 0.90959 0.89029 1.20547 1.01731 1.02905 0.89704 0.91687 0.90761 0.91744 0.89179 0.89156 0.91204 0.92084 0.90028 0.83527 0.75171 0.89945 0.89960 0.77045 0.91666 0.90724 0.92249 0.87958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.96 10.24 37.16 0.38 -0.58 16 2 C 0.09 0.62 6.08 -4.04 -0.02 0.59 16 3 N -0.44 -4.66 2.69 -107.96 -0.29 -4.95 16 4 C 0.01 0.06 6.85 -81.87 -0.56 -0.50 16 5 C -0.08 -0.61 10.06 36.01 0.36 -0.25 16 6 C -0.16 -2.20 10.45 -37.50 -0.39 -2.60 16 7 C -0.23 -3.56 6.29 -103.35 -0.65 -4.21 16 8 C 0.59 10.77 7.81 -12.60 -0.10 10.68 16 9 O -0.56 -11.28 14.81 5.25 0.08 -11.20 16 10 N -0.70 -13.22 5.52 -62.61 -0.35 -13.56 16 11 C 0.11 2.20 6.15 -5.19 -0.03 2.17 16 12 C 0.43 10.31 7.85 -10.99 -0.09 10.22 16 13 O -0.60 -15.83 15.24 5.54 0.08 -15.75 16 14 N -0.55 -14.10 5.29 -10.96 -0.06 -14.16 16 15 C -0.30 -8.43 9.68 -14.93 -0.14 -8.57 16 16 H 0.11 3.02 7.16 -52.48 -0.38 2.65 16 17 C 0.02 0.65 5.50 -17.47 -0.10 0.56 16 18 N -0.90 -24.40 13.05 55.50 0.72 -23.68 16 19 Si 0.93 20.92 29.55 -169.99 -5.02 15.89 16 20 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 23 C 0.10 1.34 6.89 -81.89 -0.56 0.78 16 24 C -0.09 -1.02 9.26 36.00 0.33 -0.69 16 25 H 0.06 0.44 8.11 -51.93 -0.42 0.02 16 26 H 0.07 0.27 8.14 -51.94 -0.42 -0.15 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.09 0.49 7.51 -51.92 -0.39 0.10 16 29 H 0.09 0.44 6.90 -51.93 -0.36 0.09 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.36 6.94 -51.93 -0.36 0.00 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.15 1.91 7.70 -52.48 -0.40 1.50 16 34 H 0.41 7.66 6.56 -40.82 -0.27 7.39 16 35 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 36 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 37 H 0.40 9.73 7.90 -40.82 -0.32 9.41 16 38 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.49 7.56 -51.93 -0.39 0.10 16 41 H 0.10 1.37 6.47 -51.93 -0.34 1.03 16 LS Contribution 348.69 15.07 5.25 5.25 Total: -1.00 -33.20 348.69 -6.87 -40.07 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: -5.72 Total: 14.48 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: -1.57 Total: 7.60 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: 0.03 Total: -56.35 kcal Atomic # 8 Polarization: -27.11 SS G_CDS: 0.16 Total: -26.95 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.20 -6.87 -40.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343509713.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.601 kcal (2) G-P(sol) polarization free energy of solvation -33.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds