Wall clock time and date at job start Tue Mar 31 2020 02:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46507 * 109.47541 * 2 1 4 4 C 1.36446 * 124.84873 * 90.02186 * 3 2 1 5 5 C 1.50701 * 125.57172 * 359.96731 * 4 3 2 6 6 C 1.34484 * 108.85343 * 179.97438 * 4 3 2 7 7 C 1.46691 * 106.33575 * 0.02562 * 6 4 3 8 8 C 1.47256 * 126.94066 * 179.97438 * 7 6 4 9 9 O 1.21628 * 120.00065 * 180.02562 * 8 7 6 10 10 N 1.34777 * 120.00270 * 0.02562 * 8 7 6 11 11 C 1.46506 * 119.99873 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.46928 * 179.97438 * 11 10 8 13 13 O 1.21297 * 119.99980 * 359.97438 * 12 11 10 14 14 N 1.34779 * 120.00037 * 179.97438 * 12 11 10 15 15 C 1.37097 * 119.99944 * 179.97438 * 14 12 11 16 16 H 1.08003 * 120.00055 * 0.02562 * 15 14 12 17 17 C 1.38948 * 119.99682 * 180.02562 * 15 14 12 18 18 N 1.31416 * 120.00213 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99894 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47229 * 90.00155 * 19 17 15 21 21 H 1.48500 * 109.47256 * 210.00069 * 19 17 15 22 22 H 1.48506 * 109.46930 * 329.99910 * 19 17 15 23 23 C 1.34654 * 124.85030 * 270.29404 * 3 2 1 24 24 C 1.50697 * 125.80521 * 0.05759 * 23 3 2 25 25 H 1.09002 * 109.46887 * 59.99228 * 1 2 3 26 26 H 1.08988 * 109.47592 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46950 * 300.00383 * 1 2 3 28 28 H 1.09009 * 109.47064 * 240.00149 * 2 1 3 29 29 H 1.08999 * 109.47197 * 120.00073 * 2 1 3 30 30 H 1.09003 * 109.46800 * 269.99403 * 5 4 3 31 31 H 1.08997 * 109.47364 * 29.99113 * 5 4 3 32 32 H 1.09003 * 109.47163 * 149.99746 * 5 4 3 33 33 H 1.08003 * 126.82966 * 179.97438 * 6 4 3 34 34 H 0.96999 * 120.00047 * 359.97438 * 10 8 7 35 35 H 1.09004 * 109.47073 * 299.99562 * 11 10 8 36 36 H 1.09000 * 109.47212 * 59.99645 * 11 10 8 37 37 H 0.96996 * 119.99844 * 0.02562 * 14 12 11 38 38 H 0.97002 * 120.00016 * 180.02562 * 18 17 15 39 39 H 1.08999 * 109.47312 * 270.16159 * 24 23 3 40 40 H 1.09002 * 109.47250 * 30.16204 * 24 23 3 41 41 H 1.09006 * 109.47289 * 150.16160 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2788 2.1162 1.1198 5 6 2.1102 1.6401 2.5396 6 6 2.7102 3.3348 0.7492 7 6 2.7123 3.3433 -0.7177 8 6 3.1061 4.4580 -1.5957 9 8 3.0584 4.3266 -2.8039 10 7 3.5193 5.6239 -1.0605 11 6 3.9104 6.7330 -1.9341 12 6 4.3280 7.9117 -1.0930 13 8 4.3009 7.8332 0.1171 14 7 4.7314 9.0531 -1.6854 15 6 5.1107 10.1256 -0.9202 16 1 5.0866 10.0557 0.1573 17 6 5.5261 11.3025 -1.5309 18 7 5.5549 11.3878 -2.8420 19 14 6.0436 12.7636 -0.4883 20 1 7.5008 12.6842 -0.2135 21 1 5.7453 14.0224 -1.2175 22 1 5.2961 12.7457 0.7947 23 6 2.2696 2.1086 -1.1050 24 6 2.0951 1.6408 -2.5269 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3634 -1.0275 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8901 29 1 1.8933 -0.5138 0.8900 30 1 1.1009 1.8685 2.8820 31 1 2.2738 0.5634 2.5837 32 1 2.8340 2.1441 3.1802 33 1 2.9971 4.1461 1.4018 34 1 3.5570 5.7289 -0.0969 35 1 4.7439 6.4226 -2.5644 36 1 3.0658 7.0163 -2.5621 37 1 4.7526 9.1161 -2.6530 38 1 5.8452 12.2093 -3.2683 39 1 3.0207 1.1820 -2.8746 40 1 1.2878 0.9098 -2.5725 41 1 1.8506 2.4922 -3.1621 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343509713.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:40 Heat of formation + Delta-G solvation = -64.408118 kcal Electronic energy + Delta-G solvation = -22825.918506 eV Core-core repulsion = 19319.117777 eV Total energy + Delta-G solvation = -3506.800728 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.47932 -40.69143 -39.62496 -36.23740 -35.29235 -34.93150 -33.58135 -33.37532 -30.69466 -30.06808 -29.01790 -26.68111 -25.53603 -24.41693 -22.70138 -21.38718 -20.99171 -20.16275 -19.59763 -18.25190 -17.37052 -17.07142 -16.75419 -16.54113 -16.28784 -16.15516 -15.75212 -15.43800 -15.19576 -14.61609 -14.38683 -14.10754 -14.00585 -13.89059 -13.70414 -13.54695 -13.51889 -13.46153 -13.15552 -12.90575 -12.87304 -12.48989 -12.45899 -12.26146 -12.12179 -12.07294 -11.57348 -10.93025 -10.56262 -10.18694 -10.08243 -9.53298 -8.93375 -8.50930 -6.01350 0.73401 1.36472 1.41987 1.42425 1.55587 1.79924 1.89959 2.21151 2.41183 2.55464 3.14327 3.15971 3.77587 3.79801 3.87766 4.10299 4.12603 4.20118 4.31119 4.37384 4.44277 4.46414 4.51918 4.62881 4.71477 4.78687 4.82107 4.87988 4.96117 5.06414 5.13912 5.26660 5.30425 5.36981 5.41796 5.82385 5.91939 6.13807 6.38801 6.47743 6.66002 7.03152 7.28916 7.44404 7.94375 8.66197 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.032937 B = 0.002775 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.900988 B =10086.641568 C =10810.751889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.085 3.915 3 N -0.431 5.431 4 C 0.019 3.981 5 C -0.080 4.080 6 C -0.192 4.192 7 C -0.269 4.269 8 C 0.586 3.414 9 O -0.587 6.587 10 N -0.708 5.708 11 C 0.124 3.876 12 C 0.433 3.567 13 O -0.624 6.624 14 N -0.559 5.559 15 C -0.338 4.338 16 H 0.086 0.914 17 C -0.012 4.012 18 N -0.917 5.917 19 Si 0.999 3.001 20 H -0.269 1.269 21 H -0.271 1.271 22 H -0.270 1.270 23 C 0.104 3.896 24 C -0.088 4.088 25 H 0.051 0.949 26 H 0.100 0.900 27 H 0.057 0.943 28 H 0.105 0.895 29 H 0.114 0.886 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.142 0.858 34 H 0.410 0.590 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.399 0.601 38 H 0.280 0.720 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.163 -24.795 5.659 27.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.034 4.034 3 N -0.108 5.108 4 C -0.090 4.090 5 C -0.137 4.137 6 C -0.216 4.216 7 C -0.279 4.279 8 C 0.378 3.622 9 O -0.470 6.470 10 N -0.360 5.360 11 C -0.004 4.004 12 C 0.220 3.780 13 O -0.512 6.512 14 N -0.195 5.195 15 C -0.467 4.467 16 H 0.104 0.896 17 C -0.212 4.212 18 N -0.557 5.557 19 Si 0.822 3.178 20 H -0.195 1.195 21 H -0.195 1.195 22 H -0.194 1.194 23 C -0.014 4.014 24 C -0.145 4.145 25 H 0.070 0.930 26 H 0.119 0.881 27 H 0.076 0.924 28 H 0.124 0.876 29 H 0.132 0.868 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.160 0.840 34 H 0.248 0.752 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.233 0.767 38 H 0.090 0.910 39 H 0.100 0.900 40 H 0.110 0.890 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.269 -25.090 5.518 27.310 hybrid contribution 0.475 1.413 0.092 1.494 sum -8.793 -23.677 5.610 25.872 Atomic orbital electron populations 1.22149 0.93429 1.04327 1.02479 1.22263 0.96277 0.78527 1.06374 1.43907 1.49888 1.12922 1.04058 1.20660 1.06210 0.91794 0.90311 1.20432 1.03692 1.02403 0.87150 1.21974 1.08705 0.98320 0.92552 1.20071 1.18595 0.95272 0.93971 1.17735 0.75719 0.81701 0.87084 1.90666 1.57306 1.83347 1.15676 1.45510 1.67136 1.12147 1.11248 1.20751 1.01726 0.85549 0.92395 1.20409 0.83728 0.85188 0.88628 1.90464 1.61201 1.83797 1.15734 1.41839 1.56917 1.10973 1.09732 1.19748 1.43083 0.91534 0.92314 0.89624 1.26160 0.96448 1.01325 0.97269 1.69688 1.46816 1.29749 1.09433 0.84848 0.78690 0.76518 0.77793 1.19472 1.19522 1.19449 1.20453 0.99942 0.90502 0.90508 1.20531 1.03251 1.02632 0.88068 0.93009 0.88135 0.92371 0.87634 0.86762 0.89991 0.89615 0.89671 0.84048 0.75247 0.88927 0.88954 0.76689 0.91033 0.89970 0.89045 0.90509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.33 10.24 71.98 0.74 -0.59 16 2 C 0.09 0.80 6.08 86.38 0.53 1.33 16 3 N -0.43 -8.24 2.69 -495.48 -1.33 -9.57 16 4 C 0.02 0.39 6.85 40.98 0.28 0.67 16 5 C -0.08 -0.98 10.06 71.24 0.72 -0.26 16 6 C -0.19 -5.34 10.45 23.62 0.25 -5.09 16 7 C -0.27 -8.62 6.29 -19.04 -0.12 -8.73 16 8 C 0.59 22.21 7.81 86.61 0.68 22.88 16 9 O -0.59 -24.23 14.81 -4.12 -0.06 -24.29 16 10 N -0.71 -27.57 5.52 -470.25 -2.60 -30.17 16 11 C 0.12 5.03 6.15 85.63 0.53 5.56 16 12 C 0.43 21.37 7.85 87.66 0.69 22.06 16 13 O -0.62 -34.23 15.24 -3.08 -0.05 -34.28 16 14 N -0.56 -29.37 5.29 -306.98 -1.62 -31.00 16 15 C -0.34 -19.19 9.68 84.04 0.81 -18.38 16 16 H 0.09 5.11 7.16 -2.91 -0.02 5.09 16 17 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 18 N -0.92 -49.87 13.05 21.66 0.28 -49.58 16 19 Si 1.00 42.69 29.55 68.60 2.03 44.72 16 20 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 21 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 22 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 23 C 0.10 2.67 6.89 41.78 0.29 2.95 16 24 C -0.09 -1.86 9.26 71.24 0.66 -1.20 16 25 H 0.05 0.57 8.11 -2.39 -0.02 0.55 16 26 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 27 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 28 H 0.11 0.72 7.51 -2.38 -0.02 0.71 16 29 H 0.11 0.59 6.90 -2.39 -0.02 0.57 16 30 H 0.08 0.86 8.14 -2.39 -0.02 0.85 16 31 H 0.09 0.65 6.94 -2.39 -0.02 0.63 16 32 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.14 3.89 7.70 -2.91 -0.02 3.87 16 34 H 0.41 16.06 6.56 -92.71 -0.61 15.45 16 35 H 0.09 3.59 8.14 -2.38 -0.02 3.57 16 36 H 0.09 3.58 8.14 -2.39 -0.02 3.56 16 37 H 0.40 20.11 7.90 -92.71 -0.73 19.37 16 38 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16 39 H 0.08 1.61 8.14 -2.39 -0.02 1.60 16 40 H 0.09 1.30 7.56 -2.39 -0.02 1.28 16 41 H 0.08 2.07 6.47 -2.38 -0.02 2.06 16 Total: -1.00 -73.10 348.69 2.88 -70.22 By element: Atomic # 1 Polarization: 43.18 SS G_CDS: -0.27 Total: 42.91 kcal Atomic # 6 Polarization: 14.54 SS G_CDS: 6.51 Total: 21.04 kcal Atomic # 7 Polarization: -115.05 SS G_CDS: -5.27 Total: -120.32 kcal Atomic # 8 Polarization: -58.46 SS G_CDS: -0.11 Total: -58.57 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -73.10 2.88 -70.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343509713.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.811 kcal (2) G-P(sol) polarization free energy of solvation -73.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds