Wall clock time and date at job start Tue Mar 31 2020 03:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42895 * 113.99880 * 2 1 4 4 C 1.52997 * 109.47297 * 179.97438 * 3 2 1 5 5 N 1.46904 * 109.47298 * 67.25493 * 4 3 2 6 6 C 1.46906 * 111.00143 * 289.41410 * 5 4 3 7 7 C 1.50703 * 109.46897 * 295.77542 * 6 5 4 8 8 O 1.21291 * 119.99891 * 353.44516 * 7 6 5 9 9 N 1.34773 * 119.99926 * 173.44999 * 7 6 5 10 10 C 1.37101 * 119.99784 * 179.97438 * 9 7 6 11 11 H 1.07997 * 120.00391 * 359.97438 * 10 9 7 12 12 C 1.38953 * 119.99973 * 179.97438 * 10 9 7 13 13 N 1.31417 * 119.99571 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00127 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.46911 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.47136 * 120.00217 * 14 12 10 17 17 H 1.48507 * 109.46909 * 240.00147 * 14 12 10 18 18 C 1.46901 * 110.99799 * 53.36308 * 5 4 3 19 19 C 1.50696 * 109.46852 * 66.04854 * 18 5 4 20 20 C 1.38228 * 119.62006 * 95.02547 * 19 18 5 21 21 C 1.38631 * 119.16156 * 179.97438 * 20 19 18 22 22 C 1.38670 * 118.41825 * 359.97438 * 21 20 19 23 23 C 1.38182 * 119.16973 * 0.02562 * 22 21 20 24 24 N 1.31862 * 119.61820 * 274.99979 * 19 18 5 25 25 H 1.09001 * 109.47052 * 300.00348 * 1 2 3 26 26 H 1.08998 * 109.46880 * 60.00210 * 1 2 3 27 27 H 1.09001 * 109.46953 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47229 * 60.00155 * 3 2 1 29 29 H 1.09005 * 109.47260 * 300.00066 * 3 2 1 30 30 H 1.09003 * 109.47091 * 307.26151 * 4 3 2 31 31 H 1.08995 * 109.47718 * 187.26111 * 4 3 2 32 32 H 1.09006 * 109.47109 * 55.76900 * 6 5 4 33 33 H 1.08999 * 109.46940 * 175.77561 * 6 5 4 34 34 H 0.96997 * 120.00015 * 359.97438 * 9 7 6 35 35 H 0.97005 * 119.99317 * 179.97438 * 13 12 10 36 36 H 1.09007 * 109.47331 * 306.05137 * 18 5 4 37 37 H 1.08992 * 109.47095 * 186.04748 * 18 5 4 38 38 H 1.08001 * 120.41692 * 359.94664 * 20 19 18 39 39 H 1.08002 * 120.78799 * 180.02562 * 21 20 19 40 40 H 1.08005 * 120.41455 * 179.97438 * 22 21 20 41 41 H 1.07997 * 119.61861 * 180.27487 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9819 0.6120 -1.2764 6 6 3.6146 -0.8070 -1.3741 7 6 4.3438 -1.5889 -0.3120 8 8 5.1835 -1.0442 0.3730 9 7 4.0629 -2.8935 -0.1235 10 6 4.7267 -3.6050 0.8424 11 1 5.4749 -3.1201 1.4518 12 6 4.4368 -4.9499 1.0371 13 7 3.5267 -5.5400 0.2951 14 14 5.3407 -5.9191 2.3536 15 1 6.3082 -5.0304 3.0459 16 1 4.3628 -6.4478 3.3381 17 1 6.0693 -7.0494 1.7235 18 6 3.4448 1.3742 -2.4115 19 6 4.0386 2.7592 -2.4126 20 6 5.1536 3.0238 -3.1856 21 6 5.6917 4.3014 -3.1799 22 6 5.0853 5.2695 -2.3937 23 6 3.9729 4.9310 -1.6471 24 7 3.4883 3.7048 -1.6765 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6887 1.8463 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.8482 0.5359 0.8188 31 1 3.9781 2.1722 0.1305 32 1 2.5394 -0.9147 -1.2306 33 1 3.8898 -1.1866 -2.3581 34 1 3.3912 -3.3291 -0.6711 35 1 3.3247 -6.4790 0.4309 36 1 2.3606 1.4438 -2.3220 37 1 3.7007 0.8684 -3.3424 38 1 5.6000 2.2450 -3.7861 39 1 6.5621 4.5373 -3.7742 40 1 5.4779 6.2752 -2.3648 41 1 3.4922 5.6804 -1.0357 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347266958.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:14:57 Heat of formation + Delta-G solvation = -48.177094 kcal Electronic energy + Delta-G solvation = -23896.034735 eV Core-core repulsion = 20389.937837 eV Total energy + Delta-G solvation = -3506.096898 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.31823 -40.35116 -39.09064 -37.27812 -35.80330 -33.34109 -33.19167 -32.75444 -30.93090 -28.92753 -27.38420 -26.84712 -25.27927 -24.31522 -23.62404 -21.70684 -20.76380 -19.75918 -18.02032 -17.85780 -17.66225 -17.30987 -16.81799 -16.63877 -16.42199 -16.05541 -15.85735 -15.75641 -15.29892 -15.13295 -14.44315 -14.27545 -14.01967 -13.73935 -13.45182 -13.33674 -13.14248 -12.92116 -12.81648 -12.73946 -12.42413 -12.34772 -12.32844 -12.09687 -11.94619 -11.40973 -10.71109 -10.58179 -10.33024 -10.16386 -9.92205 -9.88791 -9.05050 -8.40864 -5.88464 0.23627 0.45434 1.38467 1.42116 1.56845 2.16345 2.31985 2.64510 2.88081 3.17155 3.27106 3.44275 3.54694 3.82711 4.09092 4.10754 4.21290 4.31120 4.32326 4.36072 4.40886 4.47250 4.48807 4.54791 4.65168 4.69482 4.73436 4.81995 4.86635 4.93970 5.02776 5.17359 5.33477 5.36666 5.45674 5.86234 5.93293 6.08942 6.16572 6.30176 6.68433 7.13077 7.20083 7.65543 8.22434 8.77216 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.021446 B = 0.003870 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.320322 B = 7233.186693 C = 7953.744505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.409 6.409 3 C 0.035 3.965 4 C 0.069 3.931 5 N -0.517 5.517 6 C 0.048 3.952 7 C 0.453 3.547 8 O -0.621 6.621 9 N -0.575 5.575 10 C -0.328 4.328 11 H 0.075 0.925 12 C -0.015 4.015 13 N -0.922 5.922 14 Si 0.991 3.009 15 H -0.275 1.275 16 H -0.272 1.272 17 H -0.270 1.270 18 C 0.097 3.903 19 C 0.119 3.881 20 C -0.164 4.164 21 C -0.080 4.080 22 C -0.173 4.173 23 C 0.083 3.917 24 N -0.503 5.503 25 H 0.046 0.954 26 H 0.055 0.945 27 H 0.086 0.914 28 H 0.052 0.948 29 H 0.075 0.925 30 H 0.055 0.945 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.104 0.896 34 H 0.394 0.606 35 H 0.276 0.724 36 H 0.059 0.941 37 H 0.105 0.895 38 H 0.143 0.857 39 H 0.159 0.841 40 H 0.163 0.837 41 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.250 18.986 -9.013 21.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.329 6.329 3 C -0.042 4.042 4 C -0.059 4.059 5 N -0.240 5.240 6 C -0.082 4.082 7 C 0.241 3.759 8 O -0.507 6.507 9 N -0.212 5.212 10 C -0.457 4.457 11 H 0.093 0.907 12 C -0.214 4.214 13 N -0.563 5.563 14 Si 0.815 3.185 15 H -0.200 1.200 16 H -0.197 1.197 17 H -0.195 1.195 18 C -0.030 4.030 19 C -0.018 4.018 20 C -0.184 4.184 21 C -0.106 4.106 22 C -0.192 4.192 23 C -0.075 4.075 24 N -0.213 5.213 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.104 0.896 28 H 0.070 0.930 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.102 0.898 32 H 0.110 0.890 33 H 0.122 0.878 34 H 0.228 0.772 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.123 0.877 38 H 0.161 0.839 39 H 0.177 0.823 40 H 0.180 0.820 41 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -3.872 18.798 -8.087 20.827 hybrid contribution -0.227 -0.553 0.107 0.607 sum -4.099 18.245 -7.980 20.331 Atomic orbital electron populations 1.22884 0.80254 1.03228 1.00764 1.88002 1.21128 1.28586 1.95144 1.23262 0.94898 0.84613 1.01439 1.22087 0.91365 1.00016 0.92427 1.61766 1.59366 1.00818 1.02065 1.22003 1.00203 0.88024 0.97987 1.20674 0.85507 0.82454 0.87254 1.90452 1.38117 1.70191 1.51956 1.41872 1.37087 1.08715 1.33545 1.19658 1.19569 0.92912 1.13581 0.90661 1.25999 0.97723 0.97219 1.00441 1.69696 1.32856 1.12956 1.40837 0.84898 0.78015 0.77810 0.77746 1.19980 1.19691 1.19493 1.21124 0.97837 0.89255 0.94787 1.21059 0.93469 0.94349 0.92918 1.22167 0.96485 0.98767 1.00971 1.21965 0.99341 0.92256 0.97053 1.22471 0.97175 1.01980 0.97596 1.23190 0.94247 0.92941 0.97077 1.67438 1.32581 1.02058 1.19238 0.93516 0.92612 0.89559 0.92995 0.90740 0.92612 0.89797 0.88965 0.87781 0.77232 0.91479 0.92335 0.87657 0.83943 0.82295 0.81969 0.80822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.61 11.01 113.37 1.25 1.86 16 2 O -0.41 -13.79 7.57 -148.98 -1.13 -14.92 16 3 C 0.04 1.09 5.69 71.98 0.41 1.50 16 4 C 0.07 2.56 5.07 86.30 0.44 3.00 16 5 N -0.52 -18.31 4.43 -905.34 -4.01 -22.32 16 6 C 0.05 1.85 5.13 85.56 0.44 2.29 16 7 C 0.45 23.18 7.24 87.66 0.64 23.81 16 8 O -0.62 -36.45 14.18 -3.06 -0.04 -36.49 16 9 N -0.57 -31.32 5.29 -306.99 -1.62 -32.94 16 10 C -0.33 -19.46 9.68 84.04 0.81 -18.65 16 11 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 12 C -0.01 -0.82 5.50 84.93 0.47 -0.35 16 13 N -0.92 -51.46 13.05 21.66 0.28 -51.18 16 14 Si 0.99 44.59 29.55 68.60 2.03 46.62 16 15 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 16 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 17 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 18 C 0.10 2.62 4.91 85.56 0.42 3.04 16 19 C 0.12 3.05 5.70 42.55 0.24 3.29 16 20 C -0.16 -3.55 9.72 22.36 0.22 -3.34 16 21 C -0.08 -1.36 10.18 22.47 0.23 -1.13 16 22 C -0.17 -2.67 10.11 22.36 0.23 -2.45 16 23 C 0.08 1.58 11.18 84.67 0.95 2.52 16 24 N -0.50 -12.57 8.83 -183.89 -1.62 -14.19 16 25 H 0.05 1.05 8.14 -2.39 -0.02 1.04 16 26 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.07 2.07 5.58 -2.38 -0.01 2.05 16 30 H 0.06 2.60 5.84 -2.39 -0.01 2.58 16 31 H 0.08 3.02 6.76 -2.39 -0.02 3.00 16 32 H 0.09 3.44 5.08 -2.38 -0.01 3.43 16 33 H 0.10 3.49 7.97 -2.39 -0.02 3.47 16 34 H 0.39 20.57 7.90 -92.71 -0.73 19.84 16 35 H 0.28 14.34 8.31 -92.70 -0.77 13.57 16 36 H 0.06 1.53 5.70 -2.38 -0.01 1.51 16 37 H 0.11 2.39 7.86 -2.39 -0.02 2.37 16 38 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 39 H 0.16 1.73 8.06 -2.91 -0.02 1.70 16 40 H 0.16 1.41 8.06 -2.91 -0.02 1.39 16 41 H 0.17 2.32 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -74.16 338.29 0.93 -73.23 By element: Atomic # 1 Polarization: 36.47 SS G_CDS: 0.32 Total: 36.79 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: 6.73 Total: 15.41 kcal Atomic # 7 Polarization: -113.66 SS G_CDS: -6.98 Total: -120.63 kcal Atomic # 8 Polarization: -50.24 SS G_CDS: -1.17 Total: -51.41 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -74.16 0.93 -73.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347266958.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.051 kcal (2) G-P(sol) polarization free energy of solvation -74.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds