Wall clock time and date at job start Tue Mar 31 2020 02:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.46793 * 2 1 4 4 N 1.39927 * 125.75300 * 89.98569 * 3 2 1 5 5 C 1.30451 * 108.89919 * 180.02562 * 4 3 2 6 6 C 1.50696 * 125.99285 * 179.97438 * 5 4 3 7 7 C 1.41297 * 108.02110 * 359.97438 * 5 4 3 8 8 C 1.47423 * 126.41321 * 179.97438 * 7 5 4 9 9 O 1.21609 * 119.99590 * 90.02807 * 8 7 5 10 10 N 1.34772 * 120.00351 * 270.02268 * 8 7 5 11 11 C 1.47580 * 134.49555 * 180.02562 * 10 8 7 12 12 C 1.53946 * 86.11983 * 155.35788 * 11 10 8 13 13 O 1.42897 * 113.73806 * 269.15378 * 12 11 10 14 14 C 1.50694 * 113.74528 * 137.94828 * 12 11 10 15 15 H 1.08003 * 120.00664 * 256.77090 * 14 12 11 16 16 C 1.37884 * 119.99828 * 77.04212 * 14 12 11 17 17 N 1.31511 * 119.99863 * 185.84088 * 16 14 12 18 18 Si 1.86797 * 119.99761 * 5.83622 * 16 14 12 19 19 H 1.48496 * 109.47234 * 84.67480 * 18 16 14 20 20 H 1.48506 * 109.47019 * 204.67158 * 18 16 14 21 21 H 1.48505 * 109.47283 * 324.66817 * 18 16 14 22 22 C 1.47810 * 134.45389 * 359.87074 * 10 8 7 23 23 C 1.34260 * 125.75418 * 270.30661 * 3 2 1 24 24 C 1.50709 * 126.29121 * 359.96902 * 23 3 2 25 25 H 1.09012 * 109.47031 * 299.99946 * 1 2 3 26 26 H 1.09001 * 109.47630 * 59.99343 * 1 2 3 27 27 H 1.08996 * 109.47604 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46848 * 240.00651 * 2 1 3 29 29 H 1.08994 * 109.47429 * 120.00025 * 2 1 3 30 30 H 1.08998 * 109.47391 * 269.99703 * 6 5 4 31 31 H 1.09001 * 109.47176 * 29.99888 * 6 5 4 32 32 H 1.09002 * 109.47522 * 149.99276 * 6 5 4 33 33 H 1.08998 * 113.77110 * 41.05834 * 11 10 8 34 34 H 1.08999 * 113.76491 * 269.65740 * 11 10 8 35 35 H 0.96711 * 113.99638 * 172.51053 * 13 12 11 36 36 H 0.97002 * 119.99856 * 180.02562 * 17 16 14 37 37 H 1.09000 * 113.76976 * 90.37811 * 22 10 8 38 38 H 1.09007 * 113.83838 * 318.91776 * 22 10 8 39 39 H 1.08999 * 109.46514 * 270.17534 * 24 23 3 40 40 H 1.08994 * 109.46878 * 30.17014 * 24 23 3 41 41 H 1.08998 * 109.46687 * 150.17385 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2905 2.1522 1.1356 5 6 2.7061 3.3295 0.7573 6 6 3.1055 4.4622 1.6675 7 6 2.7163 3.3564 -0.6553 8 6 3.1168 4.4918 -1.5061 9 8 4.2752 4.6097 -1.8569 10 7 2.1992 5.3990 -1.8951 11 6 2.2391 6.6221 -2.7201 12 6 0.7437 6.3678 -2.9829 13 8 0.4906 5.5707 -4.1416 14 6 -0.1020 7.6140 -2.9309 15 1 -0.7142 7.8155 -2.0642 16 6 -0.0987 8.4942 -3.9922 17 7 -0.7447 9.6360 -3.9015 18 14 0.8237 8.0647 -5.5588 19 1 -0.0417 7.2295 -6.4296 20 1 1.1898 9.3128 -6.2756 21 1 2.0565 7.3108 -5.2165 22 6 0.7482 5.5664 -1.6687 23 6 2.2742 2.1229 -1.0895 24 6 2.1128 1.6872 -2.5232 25 1 -0.3634 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 2.2328 5.0774 1.8865 31 1 3.5072 4.0575 2.5965 32 1 3.8656 5.0710 1.1779 33 1 2.8629 6.5321 -3.6094 34 1 2.4368 7.5300 -2.1503 35 1 -0.4355 5.3129 -4.2470 36 1 -0.7427 10.2551 -4.6483 37 1 0.5068 6.1634 -0.7892 38 1 0.1840 4.6351 -1.7201 39 1 3.0419 1.2373 -2.8730 40 1 1.3068 0.9567 -2.5923 41 1 1.8729 2.5525 -3.1410 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408318384.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:08 Heat of formation + Delta-G solvation = 0.833043 kcal Electronic energy + Delta-G solvation = -24352.682254 eV Core-core repulsion = 20848.710595 eV Total energy + Delta-G solvation = -3503.971659 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -42.54453 -41.06105 -38.97742 -35.96647 -35.89933 -34.50047 -33.45721 -31.96203 -30.60764 -28.85232 -28.23309 -27.24417 -26.92696 -24.36443 -22.70025 -21.35022 -20.43535 -19.98052 -19.45790 -18.23595 -17.63149 -17.05398 -16.84763 -16.37918 -16.15063 -15.82253 -15.29659 -15.13338 -14.90739 -14.68481 -14.41318 -14.26219 -14.01949 -13.93482 -13.82851 -13.72792 -13.46386 -13.11091 -12.99812 -12.92401 -12.71506 -12.57463 -12.53633 -12.26813 -11.93636 -11.79294 -11.26837 -10.97359 -10.74562 -10.42234 -10.17376 -9.64005 -9.54685 -8.35514 -6.50325 0.64437 1.30088 1.41481 1.45429 1.49236 1.54369 1.66163 2.06652 2.39804 2.97579 3.26979 3.43070 3.51561 3.82472 3.87701 3.90985 4.06795 4.08364 4.30271 4.34701 4.45635 4.49485 4.53746 4.65140 4.66768 4.69256 4.73174 4.73951 4.78551 4.90399 4.93009 4.95827 5.03555 5.12539 5.22623 5.44742 5.48019 5.96427 6.06394 6.57514 6.61612 6.78015 7.10163 7.14458 7.30375 8.77180 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.021218 B = 0.004708 C = 0.004481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.292382 B = 5945.768154 C = 6247.691934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.115 3.885 3 N -0.353 5.353 4 N -0.315 5.315 5 C 0.102 3.898 6 C -0.074 4.074 7 C -0.307 4.307 8 C 0.617 3.383 9 O -0.595 6.595 10 N -0.623 5.623 11 C 0.107 3.893 12 C 0.201 3.799 13 O -0.563 6.563 14 C -0.542 4.542 15 H 0.060 0.940 16 C 0.045 3.955 17 N -0.926 5.926 18 Si 0.959 3.041 19 H -0.271 1.271 20 H -0.315 1.315 21 H -0.258 1.258 22 C 0.103 3.897 23 C 0.134 3.866 24 C -0.095 4.095 25 H 0.048 0.952 26 H 0.059 0.941 27 H 0.107 0.893 28 H 0.122 0.878 29 H 0.106 0.894 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.095 0.905 35 H 0.388 0.612 36 H 0.269 0.731 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.110 0.890 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.026 -20.099 6.471 21.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.004 4.004 3 N -0.133 5.133 4 N -0.137 5.137 5 C -0.065 4.065 6 C -0.133 4.133 7 C -0.322 4.322 8 C 0.407 3.593 9 O -0.477 6.477 10 N -0.356 5.356 11 C -0.015 4.015 12 C 0.160 3.840 13 O -0.371 6.371 14 C -0.580 4.580 15 H 0.078 0.922 16 C -0.157 4.157 17 N -0.564 5.564 18 Si 0.788 3.212 19 H -0.197 1.197 20 H -0.245 1.245 21 H -0.183 1.183 22 C -0.019 4.019 23 C 0.002 3.998 24 C -0.153 4.153 25 H 0.067 0.933 26 H 0.078 0.922 27 H 0.125 0.875 28 H 0.140 0.860 29 H 0.124 0.876 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.113 0.887 35 H 0.238 0.762 36 H 0.078 0.922 37 H 0.111 0.889 38 H 0.107 0.893 39 H 0.114 0.886 40 H 0.129 0.871 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.023 -20.884 7.218 22.188 hybrid contribution -0.025 1.066 -1.277 1.664 sum 1.998 -19.817 5.941 20.785 Atomic orbital electron populations 1.22170 0.93029 1.04664 1.02414 1.22205 0.96214 0.75512 1.06465 1.48681 1.49548 1.12993 1.02107 1.76979 1.24321 1.03986 1.08437 1.22556 0.97039 0.94838 0.92024 1.20277 1.02298 0.92982 0.97741 1.19797 1.22194 0.96215 0.93990 1.17283 0.82988 0.81198 0.77814 1.90696 1.20092 1.77921 1.59018 1.50166 1.10719 1.24462 1.50238 1.23728 0.97539 0.86993 0.93258 1.20335 0.91638 0.88717 0.83318 1.86222 1.33306 1.71769 1.45843 1.21295 1.27663 1.04631 1.04412 0.92198 1.25602 0.94770 0.93791 1.01524 1.70032 1.43572 1.09651 1.33161 0.85590 0.80601 0.75402 0.79592 1.19696 1.24457 1.18300 1.23873 0.78559 0.99859 0.99610 1.21657 0.95684 0.90081 0.92404 1.20655 1.04884 1.03501 0.86295 0.93321 0.92165 0.87481 0.85969 0.87555 0.89107 0.88803 0.91585 0.92201 0.88715 0.76182 0.92184 0.88922 0.89316 0.88620 0.87103 0.90829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 10.24 71.98 0.74 -1.13 16 2 C 0.11 1.53 6.75 86.38 0.58 2.11 16 3 N -0.35 -8.44 3.58 -332.98 -1.19 -9.63 16 4 N -0.32 -9.18 12.50 -46.67 -0.58 -9.77 16 5 C 0.10 3.17 7.26 43.51 0.32 3.49 16 6 C -0.07 -1.94 10.28 71.23 0.73 -1.21 16 7 C -0.31 -10.41 5.62 -20.15 -0.11 -10.52 16 8 C 0.62 24.87 7.21 86.66 0.62 25.49 16 9 O -0.60 -28.31 17.84 -4.06 -0.07 -28.38 16 10 N -0.62 -24.59 3.61 -843.49 -3.05 -27.64 16 11 C 0.11 4.63 7.28 86.49 0.63 5.26 16 12 C 0.20 8.39 0.93 -10.89 -0.01 8.38 16 13 O -0.56 -22.04 10.55 -148.98 -1.57 -23.61 16 14 C -0.54 -27.06 9.16 25.60 0.23 -26.82 16 15 H 0.06 3.24 8.06 -2.91 -0.02 3.22 16 16 C 0.05 2.39 5.47 84.66 0.46 2.85 16 17 N -0.93 -53.31 13.96 21.45 0.30 -53.01 16 18 Si 0.96 44.59 25.58 68.60 1.75 46.34 16 19 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 20 H -0.32 -14.99 7.11 99.48 0.71 -14.28 16 21 H -0.26 -11.95 5.30 99.48 0.53 -11.43 16 22 C 0.10 3.69 8.00 86.44 0.69 4.38 16 23 C 0.13 3.63 7.01 42.14 0.30 3.93 16 24 C -0.10 -1.95 9.70 71.24 0.69 -1.26 16 25 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 26 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.12 0.95 7.64 -2.39 -0.02 0.93 16 29 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.07 1.87 8.01 -2.39 -0.02 1.85 16 33 H 0.06 2.74 6.82 -2.39 -0.02 2.73 16 34 H 0.09 4.05 8.09 -2.39 -0.02 4.03 16 35 H 0.39 12.36 9.10 -74.05 -0.67 11.68 16 36 H 0.27 14.71 8.31 -92.71 -0.77 13.93 16 37 H 0.09 3.23 8.09 -2.39 -0.02 3.22 16 38 H 0.09 2.78 8.14 -2.38 -0.02 2.76 16 39 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.11 1.42 7.71 -2.39 -0.02 1.40 16 41 H 0.07 1.86 7.96 -2.39 -0.02 1.84 16 Total: -1.00 -72.78 346.93 1.65 -71.13 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: 0.19 Total: 19.62 kcal Atomic # 6 Polarization: 9.07 SS G_CDS: 5.87 Total: 14.95 kcal Atomic # 7 Polarization: -95.52 SS G_CDS: -4.52 Total: -100.04 kcal Atomic # 8 Polarization: -50.35 SS G_CDS: -1.64 Total: -51.99 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.75 Total: 46.34 kcal Total: -72.78 1.65 -71.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408318384.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.966 kcal (2) G-P(sol) polarization free energy of solvation -72.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds