Wall clock time and date at job start Tue Mar 31 2020 03:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50702 * 119.99932 * 2 1 4 4 N 1.46500 * 109.47089 * 124.72256 * 3 2 1 5 5 C 1.35305 * 125.86996 * 124.71440 * 4 3 2 6 6 C 1.35347 * 106.17852 * 179.90155 * 5 4 3 7 7 C 1.50703 * 126.75404 * 180.12347 * 6 5 4 8 8 N 1.46496 * 109.46948 * 95.24878 * 7 6 5 9 9 C 1.34777 * 120.00245 * 179.97438 * 8 7 6 10 10 O 1.21593 * 119.99528 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00503 * 179.97438 * 9 8 7 12 12 C 1.46494 * 120.00381 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47623 * 180.02562 * 12 11 9 14 14 C 1.52991 * 109.47628 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.47612 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99513 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00241 * 180.02562 * 15 14 13 18 18 N 1.31517 * 119.99911 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 120.00011 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.47009 * 90.00251 * 19 17 15 21 21 H 1.48507 * 109.46925 * 209.99958 * 19 17 15 22 22 H 1.48496 * 109.46977 * 329.99669 * 19 17 15 23 23 N 1.33776 * 106.49548 * 0.35304 * 6 5 4 24 24 N 1.28639 * 108.88329 * 359.77293 * 23 6 5 25 25 H 1.07999 * 120.00046 * 180.27508 * 1 2 3 26 26 H 1.08002 * 119.99713 * 0.27722 * 1 2 3 27 27 H 1.08002 * 119.99708 * 179.71665 * 2 1 3 28 28 H 1.09002 * 109.47005 * 244.72313 * 3 2 1 29 29 H 1.08999 * 109.47073 * 4.72010 * 3 2 1 30 30 H 1.08001 * 126.91155 * 0.02562 * 5 4 3 31 31 H 1.08998 * 109.47006 * 215.25166 * 7 6 5 32 32 H 1.08998 * 109.46888 * 335.25176 * 7 6 5 33 33 H 0.97002 * 120.00011 * 0.02562 * 8 7 6 34 34 H 0.97002 * 119.99753 * 0.02562 * 11 9 8 35 35 H 1.09001 * 109.47205 * 300.01122 * 12 11 9 36 36 H 1.09003 * 109.46883 * 60.00504 * 12 11 9 37 37 H 1.08995 * 109.47204 * 300.00449 * 13 12 11 38 38 H 1.09003 * 109.46754 * 60.00211 * 13 12 11 39 39 H 1.09001 * 109.47177 * 300.00894 * 14 13 12 40 40 H 1.09003 * 109.46906 * 60.00274 * 14 13 12 41 41 H 0.97001 * 120.00172 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9891 1.3347 1.1353 5 6 4.3231 1.5494 1.0652 6 6 4.7812 1.4946 2.3376 7 6 6.2071 1.6744 2.7912 8 7 6.4198 3.0670 3.1930 9 6 7.6289 3.4629 3.6378 10 8 8.5433 2.6643 3.7050 11 7 7.8247 4.7442 4.0070 12 6 9.1388 5.1745 4.4909 13 6 9.0911 6.6630 4.8412 14 6 10.4636 7.1125 5.3460 15 6 10.4165 8.5786 5.6916 16 1 9.4991 9.1341 5.5643 17 6 11.5445 9.2106 6.1703 18 7 11.5034 10.4902 6.4714 19 14 13.1310 8.2496 6.3911 20 1 13.9278 8.3153 5.1397 21 1 13.9141 8.8368 7.5080 22 1 12.8123 6.8328 6.7014 23 7 3.7202 1.2445 3.1129 24 7 2.6736 1.1553 2.3702 25 1 -0.5400 -0.9353 0.0045 26 1 -0.5400 0.9353 -0.0045 27 1 1.8500 -0.9353 0.0046 28 1 2.6252 1.4004 -0.9293 29 1 1.3582 2.1318 0.0846 30 1 4.9050 1.7303 0.1735 31 1 6.4044 1.0175 3.6383 32 1 6.8828 1.4251 1.9730 33 1 5.6902 3.7040 3.1397 34 1 7.0954 5.3814 3.9530 35 1 9.4046 4.6009 5.3789 36 1 9.8847 5.0075 3.7138 37 1 8.8252 7.2368 3.9535 38 1 8.3453 6.8297 5.6185 39 1 10.7301 6.5386 6.2336 40 1 11.2092 6.9460 4.5684 41 1 12.2969 10.9349 6.8085 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425437625.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:15 Heat of formation + Delta-G solvation = 82.095296 kcal Electronic energy + Delta-G solvation = -21594.714567 eV Core-core repulsion = 18126.559455 eV Total energy + Delta-G solvation = -3468.155112 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.71898 -39.79335 -36.78454 -35.76765 -34.83600 -33.31882 -33.15351 -31.87022 -31.09281 -27.98334 -27.49222 -26.13046 -22.83977 -22.66420 -21.85948 -20.88249 -20.65492 -20.25094 -18.40530 -17.74566 -16.88789 -16.75543 -16.05915 -15.89004 -15.70812 -15.19562 -14.61512 -14.47625 -14.30822 -14.22356 -13.80608 -13.56261 -13.14495 -12.79562 -12.66464 -12.20650 -12.00971 -11.90805 -11.85337 -11.29587 -11.02844 -10.86069 -10.67096 -10.30852 -10.28172 -10.00471 -9.84183 -9.72049 -9.58284 -9.23813 -9.19829 -8.63558 -8.52916 -6.03925 -4.02480 1.07528 1.21132 1.93462 2.12086 2.99372 3.33759 3.34998 3.41284 3.46295 3.72179 3.90767 4.06236 4.29431 4.36073 4.42174 4.47070 4.62115 4.69397 5.03338 5.11631 5.30395 5.32909 5.58542 5.60486 5.68347 5.74057 5.76601 5.80485 6.08285 6.09409 6.36279 6.42361 6.51297 6.73430 6.86445 7.02713 7.27123 7.40435 7.78547 8.08833 8.12246 8.52799 8.72334 9.00002 9.58491 11.09308 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.043095 B = 0.001929 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.565803 B =14509.166113 C =14885.216671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.185 4.185 3 C 0.144 3.856 4 N -0.291 5.291 5 C -0.029 4.029 6 C -0.039 4.039 7 C 0.230 3.770 8 N -0.747 5.747 9 C 0.703 3.297 10 O -0.594 6.594 11 N -0.741 5.741 12 C 0.133 3.867 13 C -0.113 4.113 14 C -0.011 4.011 15 C -0.522 4.522 16 H 0.071 0.929 17 C 0.066 3.934 18 N -0.904 5.904 19 Si 0.880 3.120 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.264 1.264 23 N -0.252 5.252 24 N -0.076 5.076 25 H 0.109 0.891 26 H 0.104 0.896 27 H 0.118 0.882 28 H 0.116 0.884 29 H 0.105 0.895 30 H 0.194 0.806 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.396 0.604 34 H 0.395 0.605 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.019 0.981 40 H 0.015 0.985 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.797 -20.840 -17.608 34.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.204 4.204 3 C 0.024 3.976 4 N -0.084 5.084 5 C -0.180 4.180 6 C -0.178 4.178 7 C 0.104 3.896 8 N -0.404 5.404 9 C 0.403 3.597 10 O -0.472 6.472 11 N -0.395 5.395 12 C 0.010 3.990 13 C -0.151 4.151 14 C -0.049 4.049 15 C -0.560 4.560 16 H 0.090 0.910 17 C -0.135 4.135 18 N -0.543 5.543 19 Si 0.707 3.293 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.188 1.188 23 N -0.119 5.119 24 N -0.056 5.056 25 H 0.128 0.872 26 H 0.122 0.878 27 H 0.136 0.864 28 H 0.134 0.866 29 H 0.123 0.877 30 H 0.211 0.789 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.229 0.771 34 H 0.229 0.771 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.038 0.962 40 H 0.033 0.967 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -21.967 -21.714 -16.496 35.017 hybrid contribution 0.879 0.466 -0.858 1.314 sum -21.088 -21.249 -17.354 34.603 Atomic orbital electron populations 1.24032 0.95453 1.03002 0.95716 1.22830 0.96423 0.97217 1.03906 1.21225 0.92115 0.98563 0.85678 1.47483 1.07211 1.45600 1.08066 1.23538 0.84771 1.08228 1.01507 1.21984 0.97141 1.08408 0.90232 1.19131 0.86772 0.82896 1.00838 1.45064 1.12064 1.11329 1.71907 1.15925 0.82592 0.82952 0.78214 1.90924 1.42041 1.52867 1.61353 1.45316 1.15245 1.08791 1.70160 1.21515 0.82124 0.96492 0.98897 1.21707 1.01096 0.91398 1.00930 1.19502 0.91953 0.97392 0.96072 1.21107 0.98699 0.92719 1.43449 0.91038 1.25027 0.98929 0.94750 0.94780 1.69915 1.29630 1.09694 1.45030 0.86772 0.83581 0.80960 0.77984 1.20269 1.21395 1.18820 1.75170 0.95507 1.15172 1.26085 1.78381 1.21334 1.18874 0.87018 0.87244 0.87785 0.86377 0.86606 0.87717 0.78868 0.89732 0.89751 0.77058 0.77145 0.91917 0.91940 0.92194 0.92114 0.96241 0.96703 0.92731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.41 14.32 29.01 0.42 0.01 16 2 C -0.18 -0.66 9.63 -36.03 -0.35 -1.01 16 3 C 0.14 0.43 6.90 -5.19 -0.04 0.40 16 4 N -0.29 -2.02 3.43 -62.44 -0.21 -2.23 16 5 C -0.03 -0.18 11.50 -17.05 -0.20 -0.38 16 6 C -0.04 -0.37 6.61 -82.77 -0.55 -0.92 16 7 C 0.23 2.31 6.23 -5.19 -0.03 2.27 16 8 N -0.75 -8.24 5.55 -66.42 -0.37 -8.61 16 9 C 0.70 10.49 8.57 -86.92 -0.74 9.74 16 10 O -0.59 -11.24 16.34 5.28 0.09 -11.15 16 11 N -0.74 -10.49 5.56 -65.23 -0.36 -10.85 16 12 C 0.13 2.26 5.67 -4.05 -0.02 2.23 16 13 C -0.11 -2.14 5.27 -26.74 -0.14 -2.28 16 14 C -0.01 -0.26 4.04 -27.89 -0.11 -0.38 16 15 C -0.52 -14.81 9.66 -34.44 -0.33 -15.14 16 16 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 17 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 18 N -0.90 -27.91 13.96 55.43 0.77 -27.14 16 19 Si 0.88 21.89 27.47 -169.99 -4.67 17.22 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 23 N -0.25 -3.03 12.41 33.29 0.41 -2.61 16 24 N -0.08 -0.82 12.92 60.35 0.78 -0.04 16 25 H 0.11 0.23 8.06 -52.49 -0.42 -0.19 16 26 H 0.10 0.19 7.84 -52.49 -0.41 -0.22 16 27 H 0.12 0.47 8.06 -52.49 -0.42 0.05 16 28 H 0.12 0.01 8.07 -51.93 -0.42 -0.41 16 29 H 0.10 0.21 7.79 -51.93 -0.40 -0.20 16 30 H 0.19 0.52 8.06 -52.49 -0.42 0.10 16 31 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.40 3.61 8.48 -40.82 -0.35 3.26 16 34 H 0.40 4.52 8.49 -40.82 -0.35 4.18 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 40 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 41 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 LS Contribution 357.04 15.07 5.38 5.38 Total: -1.00 -36.93 357.04 -6.46 -43.39 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -6.09 Total: 0.23 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: -2.19 Total: -3.60 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: 1.02 Total: -51.47 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.09 Total: -11.15 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.67 Total: 17.22 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -36.93 -6.46 -43.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425437625.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.486 kcal (2) G-P(sol) polarization free energy of solvation -36.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds