Wall clock time and date at job start Tue Mar 31 2020 03:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50702 * 119.99932 * 2 1 4 4 N 1.46500 * 109.47089 * 124.72256 * 3 2 1 5 5 C 1.35305 * 125.86996 * 124.71440 * 4 3 2 6 6 C 1.35347 * 106.17852 * 179.90155 * 5 4 3 7 7 C 1.50703 * 126.75404 * 180.12347 * 6 5 4 8 8 N 1.46496 * 109.46948 * 95.24878 * 7 6 5 9 9 C 1.34777 * 120.00245 * 179.97438 * 8 7 6 10 10 O 1.21593 * 119.99528 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00503 * 179.97438 * 9 8 7 12 12 C 1.46494 * 120.00381 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47623 * 180.02562 * 12 11 9 14 14 C 1.52991 * 109.47628 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.47612 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99513 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00241 * 180.02562 * 15 14 13 18 18 N 1.31517 * 119.99911 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 120.00011 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.47009 * 90.00251 * 19 17 15 21 21 H 1.48507 * 109.46925 * 209.99958 * 19 17 15 22 22 H 1.48496 * 109.46977 * 329.99669 * 19 17 15 23 23 N 1.33776 * 106.49548 * 0.35304 * 6 5 4 24 24 N 1.28639 * 108.88329 * 359.77293 * 23 6 5 25 25 H 1.07999 * 120.00046 * 180.27508 * 1 2 3 26 26 H 1.08002 * 119.99713 * 0.27722 * 1 2 3 27 27 H 1.08002 * 119.99708 * 179.71665 * 2 1 3 28 28 H 1.09002 * 109.47005 * 244.72313 * 3 2 1 29 29 H 1.08999 * 109.47073 * 4.72010 * 3 2 1 30 30 H 1.08001 * 126.91155 * 0.02562 * 5 4 3 31 31 H 1.08998 * 109.47006 * 215.25166 * 7 6 5 32 32 H 1.08998 * 109.46888 * 335.25176 * 7 6 5 33 33 H 0.97002 * 120.00011 * 0.02562 * 8 7 6 34 34 H 0.97002 * 119.99753 * 0.02562 * 11 9 8 35 35 H 1.09001 * 109.47205 * 300.01122 * 12 11 9 36 36 H 1.09003 * 109.46883 * 60.00504 * 12 11 9 37 37 H 1.08995 * 109.47204 * 300.00449 * 13 12 11 38 38 H 1.09003 * 109.46754 * 60.00211 * 13 12 11 39 39 H 1.09001 * 109.47177 * 300.00894 * 14 13 12 40 40 H 1.09003 * 109.46906 * 60.00274 * 14 13 12 41 41 H 0.97001 * 120.00172 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9891 1.3347 1.1353 5 6 4.3231 1.5494 1.0652 6 6 4.7812 1.4946 2.3376 7 6 6.2071 1.6744 2.7912 8 7 6.4198 3.0670 3.1930 9 6 7.6289 3.4629 3.6378 10 8 8.5433 2.6643 3.7050 11 7 7.8247 4.7442 4.0070 12 6 9.1388 5.1745 4.4909 13 6 9.0911 6.6630 4.8412 14 6 10.4636 7.1125 5.3460 15 6 10.4165 8.5786 5.6916 16 1 9.4991 9.1341 5.5643 17 6 11.5445 9.2106 6.1703 18 7 11.5034 10.4902 6.4714 19 14 13.1310 8.2496 6.3911 20 1 13.9278 8.3153 5.1397 21 1 13.9141 8.8368 7.5080 22 1 12.8123 6.8328 6.7014 23 7 3.7202 1.2445 3.1129 24 7 2.6736 1.1553 2.3702 25 1 -0.5400 -0.9353 0.0045 26 1 -0.5400 0.9353 -0.0045 27 1 1.8500 -0.9353 0.0046 28 1 2.6252 1.4004 -0.9293 29 1 1.3582 2.1318 0.0846 30 1 4.9050 1.7303 0.1735 31 1 6.4044 1.0175 3.6383 32 1 6.8828 1.4251 1.9730 33 1 5.6902 3.7040 3.1397 34 1 7.0954 5.3814 3.9530 35 1 9.4046 4.6009 5.3789 36 1 9.8847 5.0075 3.7138 37 1 8.8252 7.2368 3.9535 38 1 8.3453 6.8297 5.6185 39 1 10.7301 6.5386 6.2336 40 1 11.2092 6.9460 4.5684 41 1 12.2969 10.9349 6.8085 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425437625.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:14 Heat of formation + Delta-G solvation = 53.756323 kcal Electronic energy + Delta-G solvation = -21595.943437 eV Core-core repulsion = 18126.559455 eV Total energy + Delta-G solvation = -3469.383982 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.32390 -40.95997 -37.36692 -36.94040 -35.87497 -35.11250 -33.69276 -33.31117 -32.22216 -29.15060 -28.18301 -27.24503 -24.49318 -23.19659 -22.52687 -22.21927 -21.76454 -20.96192 -19.43317 -18.92372 -18.31141 -17.50635 -17.08322 -16.88245 -16.29149 -16.18615 -15.90490 -15.59648 -15.43733 -15.23171 -14.74064 -14.59763 -14.36842 -14.07060 -13.75907 -13.49765 -13.18766 -12.70780 -12.67532 -12.63976 -12.40252 -11.94495 -11.90430 -11.75992 -11.56192 -11.39062 -11.29911 -11.13824 -10.73956 -10.55555 -10.37191 -10.32544 -9.74730 -8.27468 -6.31269 0.55911 0.91167 1.16631 1.38897 1.40898 1.52938 1.78849 1.99036 2.18017 2.38612 3.08470 3.19249 3.40915 3.59765 3.79264 3.85478 4.11690 4.13744 4.14446 4.26503 4.47140 4.52170 4.55289 4.63528 4.89630 4.92710 4.94670 4.95707 5.00994 5.07357 5.41407 5.45749 5.50553 5.56539 5.56820 5.59757 5.67561 5.70005 6.00382 6.29693 6.76734 7.09460 7.33627 7.44725 7.58921 8.88911 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.043095 B = 0.001929 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.565803 B =14509.166113 C =14885.216671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.198 4.198 3 C 0.136 3.864 4 N -0.282 5.282 5 C -0.004 4.004 6 C -0.058 4.058 7 C 0.234 3.766 8 N -0.729 5.729 9 C 0.703 3.297 10 O -0.635 6.635 11 N -0.733 5.733 12 C 0.147 3.853 13 C -0.100 4.100 14 C -0.012 4.012 15 C -0.531 4.531 16 H 0.037 0.963 17 C 0.004 3.996 18 N -0.951 5.951 19 Si 0.948 3.052 20 H -0.266 1.266 21 H -0.285 1.285 22 H -0.248 1.248 23 N -0.294 5.294 24 N -0.109 5.109 25 H 0.112 0.888 26 H 0.114 0.886 27 H 0.110 0.890 28 H 0.152 0.848 29 H 0.117 0.883 30 H 0.237 0.763 31 H 0.064 0.936 32 H 0.100 0.900 33 H 0.408 0.592 34 H 0.410 0.590 35 H 0.053 0.947 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.020 0.980 40 H 0.022 0.978 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.996 -22.036 -19.598 36.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.217 4.217 3 C 0.018 3.982 4 N -0.075 5.075 5 C -0.157 4.157 6 C -0.197 4.197 7 C 0.108 3.892 8 N -0.386 5.386 9 C 0.402 3.598 10 O -0.516 6.516 11 N -0.388 5.388 12 C 0.022 3.978 13 C -0.138 4.138 14 C -0.050 4.050 15 C -0.569 4.569 16 H 0.055 0.945 17 C -0.192 4.192 18 N -0.592 5.592 19 Si 0.771 3.229 20 H -0.191 1.191 21 H -0.211 1.211 22 H -0.171 1.171 23 N -0.161 5.161 24 N -0.088 5.088 25 H 0.131 0.869 26 H 0.133 0.867 27 H 0.128 0.872 28 H 0.170 0.830 29 H 0.135 0.865 30 H 0.253 0.747 31 H 0.082 0.918 32 H 0.118 0.882 33 H 0.243 0.757 34 H 0.246 0.754 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.039 0.961 40 H 0.040 0.960 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -22.260 -22.915 -18.506 36.920 hybrid contribution 0.790 0.861 -0.318 1.211 sum -21.471 -22.054 -18.824 36.079 Atomic orbital electron populations 1.24214 0.95457 1.03745 0.94772 1.22862 0.96726 0.97325 1.04760 1.21658 0.92431 0.98517 0.85594 1.47826 1.08014 1.43801 1.07847 1.24105 0.84585 1.05280 1.01702 1.21934 0.96291 1.10105 0.91346 1.19109 0.87856 0.81643 1.00576 1.44930 1.11030 1.12093 1.70516 1.16017 0.83094 0.82555 0.78089 1.90898 1.43683 1.53936 1.63119 1.45049 1.14792 1.09110 1.69883 1.21149 0.83404 0.94710 0.98500 1.21476 0.98459 0.92790 1.01056 1.19467 0.94921 0.94236 0.96419 1.21480 0.97421 0.95085 1.42919 0.94485 1.25985 1.02962 0.95693 0.94588 1.70062 1.30903 1.11652 1.46548 0.85693 0.78834 0.80047 0.78315 1.19116 1.21116 1.17119 1.75104 0.96588 1.16604 1.27795 1.78305 1.21330 1.20583 0.88582 0.86946 0.86737 0.87240 0.83042 0.86535 0.74662 0.91775 0.88223 0.75705 0.75424 0.92864 0.92255 0.91588 0.91983 0.96127 0.95967 0.92551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.62 14.32 67.78 0.97 0.35 16 2 C -0.20 -1.10 9.63 25.64 0.25 -0.86 16 3 C 0.14 0.44 6.90 85.63 0.59 1.03 16 4 N -0.28 -3.29 3.43 -351.47 -1.21 -4.50 16 5 C 0.00 -0.04 11.50 83.49 0.96 0.92 16 6 C -0.06 -1.00 6.61 41.60 0.28 -0.72 16 7 C 0.23 4.42 6.23 85.63 0.53 4.95 16 8 N -0.73 -14.93 5.55 -482.30 -2.68 -17.61 16 9 C 0.70 19.96 8.57 179.05 1.53 21.49 16 10 O -0.63 -23.48 16.34 -4.01 -0.07 -23.55 16 11 N -0.73 -19.46 5.56 -478.54 -2.66 -22.12 16 12 C 0.15 4.74 5.67 86.38 0.49 5.23 16 13 C -0.10 -3.63 5.27 30.59 0.16 -3.47 16 14 C -0.01 -0.57 4.04 29.84 0.12 -0.45 16 15 C -0.53 -30.34 9.66 25.60 0.25 -30.09 16 16 H 0.04 2.30 7.99 -2.91 -0.02 2.27 16 17 C 0.00 0.26 5.47 84.65 0.46 0.72 16 18 N -0.95 -59.68 13.96 21.45 0.30 -59.39 16 19 Si 0.95 44.62 27.47 68.60 1.88 46.50 16 20 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 21 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 22 H -0.25 -10.93 6.54 99.48 0.65 -10.28 16 23 N -0.29 -6.98 12.41 -48.60 -0.60 -7.59 16 24 N -0.11 -2.25 12.92 37.02 0.48 -1.77 16 25 H 0.11 0.38 8.06 -2.91 -0.02 0.35 16 26 H 0.11 0.22 7.84 -2.91 -0.02 0.20 16 27 H 0.11 0.78 8.06 -2.91 -0.02 0.75 16 28 H 0.15 -0.61 8.07 -2.39 -0.02 -0.63 16 29 H 0.12 0.14 7.79 -2.39 -0.02 0.12 16 30 H 0.24 0.09 8.06 -2.91 -0.02 0.07 16 31 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.41 6.62 8.48 -92.71 -0.79 5.83 16 34 H 0.41 8.50 8.49 -92.71 -0.79 7.71 16 35 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.02 0.94 7.20 -2.39 -0.02 0.92 16 40 H 0.02 0.99 7.57 -2.39 -0.02 0.97 16 41 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -81.75 357.04 1.46 -80.30 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -0.58 Total: 10.60 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: 6.59 Total: -0.89 kcal Atomic # 7 Polarization: -106.60 SS G_CDS: -6.37 Total: -112.97 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.07 Total: -23.55 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 1.88 Total: 46.50 kcal Total: -81.75 1.46 -80.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425437625.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.052 kcal (2) G-P(sol) polarization free energy of solvation -81.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds