Wall clock time and date at job start Tue Mar 31 2020 03:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 119.99897 * 2 1 4 4 H 1.48508 * 109.46917 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47389 * 299.99625 * 3 2 1 6 6 H 1.48504 * 109.47117 * 59.99969 * 3 2 1 7 7 C 1.37877 * 119.99735 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99950 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00263 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47388 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47700 * 179.97438 * 10 9 7 12 12 C 1.34775 * 120.00460 * 180.02562 * 11 10 9 13 13 O 1.21578 * 119.99693 * 4.98347 * 12 11 10 14 14 N 1.34776 * 119.99815 * 184.98970 * 12 11 10 15 15 C 1.46927 * 120.63352 * 354.77029 * 14 12 11 16 16 C 1.53199 * 108.77429 * 233.61461 * 15 14 12 17 17 C 1.53035 * 109.31216 * 305.36491 * 16 15 14 18 18 C 1.53037 * 109.54112 * 61.36528 * 17 16 15 19 19 H 1.08996 * 109.49867 * 58.61491 * 18 17 16 20 20 N 1.46503 * 109.50061 * 178.68303 * 18 17 16 21 21 C 1.35314 * 125.86779 * 84.93320 * 20 18 17 22 22 C 1.35350 * 106.17689 * 179.97438 * 21 20 18 23 23 N 1.33768 * 106.49408 * 359.97438 * 22 21 20 24 24 N 1.28639 * 108.88728 * 0.02562 * 23 22 21 25 25 C 1.46935 * 120.60140 * 174.79603 * 14 12 11 26 26 H 0.96999 * 119.99979 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.47079 * 59.99663 * 9 7 2 28 28 H 1.08994 * 109.47388 * 300.00016 * 9 7 2 29 29 H 1.09003 * 109.46880 * 60.00039 * 10 9 7 30 30 H 1.09003 * 109.47233 * 300.00300 * 10 9 7 31 31 H 0.97006 * 119.99338 * 0.02562 * 11 10 9 32 32 H 1.08995 * 109.59029 * 113.82498 * 15 14 12 33 33 H 1.08997 * 109.70425 * 353.46513 * 15 14 12 34 34 H 1.09001 * 109.49694 * 185.41304 * 16 15 14 35 35 H 1.08997 * 109.49348 * 65.31689 * 16 15 14 36 36 H 1.09005 * 109.45774 * 301.34644 * 17 16 15 37 37 H 1.08998 * 109.46056 * 181.39094 * 17 16 15 38 38 H 1.08002 * 126.91239 * 0.24493 * 21 20 18 39 39 H 1.07997 * 126.75402 * 180.02562 * 22 21 20 40 40 H 1.08998 * 109.61863 * 6.61579 * 25 14 12 41 41 H 1.09002 * 109.56172 * 246.18597 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5127 -4.9309 0.0012 12 6 2.1866 -6.0981 0.0018 13 8 3.3989 -6.1000 0.0933 14 7 1.5165 -7.2631 -0.0992 15 6 0.0473 -7.2844 -0.0956 16 6 -0.4290 -8.2519 0.9926 17 6 0.2190 -9.6206 0.7719 18 6 1.7402 -9.4893 0.8747 19 1 2.0059 -9.0938 1.8550 20 7 2.3580 -10.8054 0.6945 21 6 2.6623 -11.3829 -0.4908 22 6 3.2126 -12.5835 -0.1950 23 7 3.2185 -12.6804 1.1391 24 7 2.7053 -11.6108 1.6365 25 6 2.2418 -8.5357 -0.2143 26 1 -0.4850 0.8400 0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6240 -2.5567 0.8902 29 1 2.8718 -3.6043 0.8906 30 1 2.8719 -3.6044 -0.8894 31 1 0.5427 -4.9308 0.0011 32 1 -0.3156 -7.6198 -1.0670 33 1 -0.3342 -6.2847 0.1119 34 1 -1.5134 -8.3504 0.9425 35 1 -0.1430 -7.8675 1.9716 36 1 -0.0474 -9.9932 -0.2172 37 1 -0.1374 -10.3176 1.5303 38 1 2.5026 -10.9673 -1.4748 39 1 3.5763 -13.3185 -0.8979 40 1 3.3098 -8.3613 -0.0837 41 1 2.0582 -8.9729 -1.1958 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425508040.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:32 Heat of formation + Delta-G solvation = 71.157539 kcal Electronic energy + Delta-G solvation = -23168.779320 eV Core-core repulsion = 19700.149911 eV Total energy + Delta-G solvation = -3468.629409 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.52979 -40.46862 -38.03954 -35.08469 -34.80181 -32.93157 -32.61939 -31.35699 -30.54622 -29.37794 -26.01570 -24.90742 -24.21941 -22.85995 -22.33550 -21.32513 -20.84884 -19.56463 -18.48315 -17.60568 -16.65462 -16.46262 -15.94563 -15.70469 -15.32232 -14.95575 -14.70901 -14.53231 -14.30572 -14.03222 -13.88615 -13.55754 -13.31188 -12.93838 -12.33902 -12.16356 -11.91067 -11.69548 -11.57699 -11.46438 -11.21598 -11.13440 -11.09220 -10.66506 -10.42042 -10.33102 -10.07587 -9.64299 -9.63412 -9.31631 -9.02333 -8.56038 -8.36968 -6.14734 -4.17389 1.34778 1.86204 2.35693 2.69707 3.25110 3.28715 3.33069 3.38170 3.86145 3.97071 4.13545 4.23082 4.33910 4.41174 4.46174 4.56687 4.78250 4.91119 4.94983 5.02839 5.15787 5.19737 5.22829 5.28759 5.40142 5.47268 5.53025 5.72462 5.89974 6.07053 6.21054 6.30214 6.35938 6.67749 6.83603 6.90301 7.47391 7.54996 7.84053 8.09831 8.24352 8.27732 8.73935 8.89042 9.47848 10.96958 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.039138 B = 0.002645 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.252829 B =10582.328134 C =11023.822786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.521 4.521 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.138 3.862 11 N -0.734 5.734 12 C 0.704 3.296 13 O -0.590 6.590 14 N -0.632 5.632 15 C 0.106 3.894 16 C -0.131 4.131 17 C -0.126 4.126 18 C 0.128 3.872 19 H 0.119 0.881 20 N -0.281 5.281 21 C -0.050 4.050 22 C -0.053 4.053 23 N -0.275 5.275 24 N -0.084 5.084 25 C 0.128 3.872 26 H 0.262 0.738 27 H 0.022 0.978 28 H 0.022 0.978 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.393 0.607 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.190 0.810 39 H 0.189 0.811 40 H 0.107 0.893 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.168 -21.429 -2.744 21.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.559 4.559 8 H 0.079 0.921 9 C -0.024 4.024 10 C 0.015 3.985 11 N -0.389 5.389 12 C 0.406 3.594 13 O -0.468 6.468 14 N -0.371 5.371 15 C -0.018 4.018 16 C -0.170 4.170 17 C -0.165 4.165 18 C 0.025 3.975 19 H 0.137 0.863 20 N -0.075 5.075 21 C -0.201 4.201 22 C -0.210 4.210 23 N -0.140 5.140 24 N -0.063 5.063 25 C 0.002 3.998 26 H 0.071 0.929 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.229 0.771 32 H 0.092 0.908 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.207 0.793 39 H 0.206 0.794 40 H 0.125 0.875 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.336 -21.447 -1.154 21.605 hybrid contribution -0.264 1.166 -1.240 1.722 sum -2.600 -20.282 -2.394 20.587 Atomic orbital electron populations 1.69957 1.06097 1.26820 1.50448 1.24994 0.94904 0.99453 0.94947 0.86452 0.80190 0.83269 0.77638 1.19555 1.20920 1.20914 1.21073 0.93318 0.90276 1.51266 0.92141 1.19326 0.94226 0.91077 0.97798 1.21662 0.95740 0.80236 1.00841 1.45725 1.10001 1.05193 1.78009 1.15922 0.85301 0.80332 0.77885 1.90906 1.11979 1.85982 1.57951 1.47126 1.05989 1.04672 1.79357 1.21743 0.79736 1.01024 0.99259 1.21930 1.01222 0.93661 1.00195 1.21927 0.91717 0.99049 1.03779 1.22201 0.94035 0.77665 1.03643 0.86278 1.47534 1.39559 1.15389 1.04969 1.23677 1.06872 0.96581 0.92925 1.23627 1.05624 0.98133 0.93632 1.75123 1.15627 1.14555 1.08725 1.78355 1.14834 0.97220 1.15919 1.21523 0.99273 0.82683 0.96330 0.92874 0.95979 0.95958 0.92543 0.92666 0.77063 0.90813 0.89157 0.89195 0.90460 0.90520 0.90256 0.79328 0.79368 0.87503 0.90693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.51 13.29 55.43 0.74 -24.77 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.08 9.11 -34.44 -0.31 -14.40 16 8 H 0.06 1.61 7.74 -52.48 -0.41 1.21 16 9 C 0.01 0.32 5.09 -27.89 -0.14 0.17 16 10 C 0.14 2.82 5.62 -4.04 -0.02 2.80 16 11 N -0.73 -12.08 5.47 -65.23 -0.36 -12.43 16 12 C 0.70 11.36 8.29 -86.92 -0.72 10.64 16 13 O -0.59 -11.92 15.77 5.30 0.08 -11.84 16 14 N -0.63 -7.03 2.97 -178.49 -0.53 -7.56 16 15 C 0.11 0.81 6.38 -3.71 -0.02 0.79 16 16 C -0.13 -0.80 6.08 -26.61 -0.16 -0.96 16 17 C -0.13 -0.80 5.49 -26.69 -0.15 -0.95 16 18 C 0.13 1.09 3.27 -67.81 -0.22 0.87 16 19 H 0.12 1.17 8.14 -51.93 -0.42 0.74 16 20 N -0.28 -2.77 3.26 -54.64 -0.18 -2.95 16 21 C -0.05 -0.39 10.68 -17.05 -0.18 -0.57 16 22 C -0.05 -0.48 12.05 -17.74 -0.21 -0.69 16 23 N -0.27 -3.52 12.41 30.23 0.38 -3.14 16 24 N -0.08 -1.08 13.16 60.35 0.79 -0.29 16 25 C 0.13 1.20 5.48 -3.70 -0.02 1.18 16 26 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 27 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 31 H 0.39 5.48 5.97 -40.82 -0.24 5.24 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.09 0.71 5.65 -51.93 -0.29 0.42 16 34 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.19 0.80 7.17 -52.49 -0.38 0.43 16 39 H 0.19 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.11 1.29 7.00 -51.93 -0.36 0.92 16 41 H 0.07 0.53 6.92 -51.93 -0.36 0.17 16 LS Contribution 338.41 15.07 5.10 5.10 Total: -1.00 -34.12 338.41 -7.09 -41.21 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -5.83 Total: 0.29 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -2.27 Total: 0.39 kcal Atomic # 7 Polarization: -51.98 SS G_CDS: 0.84 Total: -51.14 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.08 Total: -11.84 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.12 -7.09 -41.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425508040.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.371 kcal (2) G-P(sol) polarization free energy of solvation -34.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds