Wall clock time and date at job start Tue Mar 31 2020 03:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 119.99897 * 2 1 4 4 H 1.48508 * 109.46917 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47389 * 299.99625 * 3 2 1 6 6 H 1.48504 * 109.47117 * 59.99969 * 3 2 1 7 7 C 1.37877 * 119.99735 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99950 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00263 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47388 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47700 * 179.97438 * 10 9 7 12 12 C 1.34775 * 120.00460 * 180.02562 * 11 10 9 13 13 O 1.21578 * 119.99693 * 4.98347 * 12 11 10 14 14 N 1.34776 * 119.99815 * 184.98970 * 12 11 10 15 15 C 1.46927 * 120.63352 * 354.77029 * 14 12 11 16 16 C 1.53199 * 108.77429 * 233.61461 * 15 14 12 17 17 C 1.53035 * 109.31216 * 305.36491 * 16 15 14 18 18 C 1.53037 * 109.54112 * 61.36528 * 17 16 15 19 19 H 1.08996 * 109.49867 * 58.61491 * 18 17 16 20 20 N 1.46503 * 109.50061 * 178.68303 * 18 17 16 21 21 C 1.35314 * 125.86779 * 84.93320 * 20 18 17 22 22 C 1.35350 * 106.17689 * 179.97438 * 21 20 18 23 23 N 1.33768 * 106.49408 * 359.97438 * 22 21 20 24 24 N 1.28639 * 108.88728 * 0.02562 * 23 22 21 25 25 C 1.46935 * 120.60140 * 174.79603 * 14 12 11 26 26 H 0.96999 * 119.99979 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.47079 * 59.99663 * 9 7 2 28 28 H 1.08994 * 109.47388 * 300.00016 * 9 7 2 29 29 H 1.09003 * 109.46880 * 60.00039 * 10 9 7 30 30 H 1.09003 * 109.47233 * 300.00300 * 10 9 7 31 31 H 0.97006 * 119.99338 * 0.02562 * 11 10 9 32 32 H 1.08995 * 109.59029 * 113.82498 * 15 14 12 33 33 H 1.08997 * 109.70425 * 353.46513 * 15 14 12 34 34 H 1.09001 * 109.49694 * 185.41304 * 16 15 14 35 35 H 1.08997 * 109.49348 * 65.31689 * 16 15 14 36 36 H 1.09005 * 109.45774 * 301.34644 * 17 16 15 37 37 H 1.08998 * 109.46056 * 181.39094 * 17 16 15 38 38 H 1.08002 * 126.91239 * 0.24493 * 21 20 18 39 39 H 1.07997 * 126.75402 * 180.02562 * 22 21 20 40 40 H 1.08998 * 109.61863 * 6.61579 * 25 14 12 41 41 H 1.09002 * 109.56172 * 246.18597 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5127 -4.9309 0.0012 12 6 2.1866 -6.0981 0.0018 13 8 3.3989 -6.1000 0.0933 14 7 1.5165 -7.2631 -0.0992 15 6 0.0473 -7.2844 -0.0956 16 6 -0.4290 -8.2519 0.9926 17 6 0.2190 -9.6206 0.7719 18 6 1.7402 -9.4893 0.8747 19 1 2.0059 -9.0938 1.8550 20 7 2.3580 -10.8054 0.6945 21 6 2.6623 -11.3829 -0.4908 22 6 3.2126 -12.5835 -0.1950 23 7 3.2185 -12.6804 1.1391 24 7 2.7053 -11.6108 1.6365 25 6 2.2418 -8.5357 -0.2143 26 1 -0.4850 0.8400 0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6240 -2.5567 0.8902 29 1 2.8718 -3.6043 0.8906 30 1 2.8719 -3.6044 -0.8894 31 1 0.5427 -4.9308 0.0011 32 1 -0.3156 -7.6198 -1.0670 33 1 -0.3342 -6.2847 0.1119 34 1 -1.5134 -8.3504 0.9425 35 1 -0.1430 -7.8675 1.9716 36 1 -0.0474 -9.9932 -0.2172 37 1 -0.1374 -10.3176 1.5303 38 1 2.5026 -10.9673 -1.4748 39 1 3.5763 -13.3185 -0.8979 40 1 3.3098 -8.3613 -0.0837 41 1 2.0582 -8.9729 -1.1958 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425508040.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:31 Heat of formation + Delta-G solvation = 47.134171 kcal Electronic energy + Delta-G solvation = -23169.821051 eV Core-core repulsion = 19700.149911 eV Total energy + Delta-G solvation = -3469.671140 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -44.27075 -41.55032 -39.02217 -36.66000 -35.74062 -34.76357 -33.42431 -32.12857 -31.68161 -30.72577 -27.25592 -26.06920 -25.29705 -23.61036 -23.11480 -22.91027 -21.86192 -20.61683 -19.42212 -18.50642 -18.42643 -17.41990 -17.08292 -16.78710 -16.50624 -16.10356 -15.74532 -15.48359 -15.31481 -15.21670 -14.89892 -14.63100 -14.28782 -14.13898 -13.95259 -13.21573 -12.96071 -12.84430 -12.60057 -12.51231 -12.35812 -12.28490 -12.18769 -12.05499 -11.92490 -11.67033 -11.44733 -11.20890 -11.06372 -10.60649 -10.34817 -10.23406 -9.62089 -8.24131 -6.33623 0.64107 1.09077 1.41148 1.42919 1.55218 1.62719 1.73095 2.04145 2.40776 2.93273 3.11154 3.15205 3.43989 3.63917 3.70663 3.89029 3.93599 4.23800 4.27305 4.34024 4.36535 4.44962 4.50750 4.53109 4.59349 4.64747 4.83747 4.86665 4.92530 4.94942 5.20594 5.27901 5.28451 5.35406 5.49846 5.59894 5.64676 5.74994 5.83686 6.17503 6.79467 6.90802 7.35682 7.47407 7.51381 8.87849 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.039138 B = 0.002645 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.252829 B =10582.328134 C =11023.822786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.962 3.038 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.278 1.278 7 C -0.545 4.545 8 H 0.057 0.943 9 C 0.025 3.975 10 C 0.159 3.841 11 N -0.729 5.729 12 C 0.702 3.298 13 O -0.636 6.636 14 N -0.621 5.621 15 C 0.099 3.901 16 C -0.124 4.124 17 C -0.117 4.117 18 C 0.132 3.868 19 H 0.097 0.903 20 N -0.280 5.280 21 C -0.036 4.036 22 C -0.061 4.061 23 N -0.312 5.312 24 N -0.129 5.129 25 C 0.130 3.870 26 H 0.266 0.734 27 H 0.012 0.988 28 H 0.009 0.991 29 H 0.041 0.959 30 H 0.045 0.955 31 H 0.407 0.593 32 H 0.104 0.896 33 H 0.087 0.913 34 H 0.117 0.883 35 H 0.062 0.938 36 H 0.099 0.901 37 H 0.076 0.924 38 H 0.231 0.769 39 H 0.220 0.780 40 H 0.077 0.923 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.227 -22.094 -4.344 22.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.787 3.213 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.583 4.583 8 H 0.076 0.924 9 C -0.013 4.013 10 C 0.035 3.965 11 N -0.386 5.386 12 C 0.403 3.597 13 O -0.518 6.518 14 N -0.359 5.359 15 C -0.023 4.023 16 C -0.162 4.162 17 C -0.155 4.155 18 C 0.030 3.970 19 H 0.115 0.885 20 N -0.074 5.074 21 C -0.188 4.188 22 C -0.219 4.219 23 N -0.177 5.177 24 N -0.108 5.108 25 C 0.005 3.995 26 H 0.075 0.925 27 H 0.030 0.970 28 H 0.027 0.973 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.245 0.755 32 H 0.122 0.878 33 H 0.105 0.895 34 H 0.136 0.864 35 H 0.081 0.919 36 H 0.118 0.882 37 H 0.094 0.906 38 H 0.247 0.753 39 H 0.236 0.764 40 H 0.096 0.904 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -3.448 -22.164 -2.733 22.596 hybrid contribution 0.047 1.299 -0.786 1.519 sum -3.401 -20.865 -3.519 21.431 Atomic orbital electron populations 1.70047 1.07408 1.27906 1.51094 1.25822 0.95790 1.02930 0.94488 0.85433 0.78969 0.78986 0.77883 1.19125 1.20170 1.20339 1.21481 0.93561 0.91941 1.51352 0.92448 1.19117 0.94189 0.91480 0.96471 1.21101 0.94686 0.81111 0.99632 1.45376 1.10506 1.04279 1.78445 1.16025 0.84780 0.81287 0.77565 1.90876 1.14168 1.86844 1.59911 1.47100 1.07571 1.03535 1.77694 1.22082 0.77107 1.01605 1.01494 1.21905 1.02727 0.92824 0.98780 1.21903 0.89469 0.99145 1.05011 1.22148 0.95596 0.77083 1.02220 0.88479 1.47645 1.39116 1.15272 1.05376 1.24358 1.04916 0.95878 0.93630 1.24268 1.05383 0.99417 0.92789 1.75065 1.16584 1.15139 1.10897 1.78323 1.17019 0.98173 1.17265 1.21623 0.97519 0.82018 0.98388 0.92542 0.96999 0.97279 0.94061 0.93625 0.75467 0.87768 0.89480 0.86436 0.91903 0.88221 0.90551 0.75296 0.76364 0.90438 0.87014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.81 13.29 21.45 0.28 -52.52 16 2 C 0.01 0.47 5.46 84.65 0.46 0.93 16 3 Si 0.96 42.88 29.54 68.60 2.03 44.90 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 5 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 6 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.54 -29.77 9.11 25.60 0.23 -29.53 16 8 H 0.06 3.10 7.74 -2.91 -0.02 3.07 16 9 C 0.02 1.21 5.09 29.85 0.15 1.36 16 10 C 0.16 6.63 5.62 86.38 0.49 7.12 16 11 N -0.73 -23.89 5.47 -478.55 -2.62 -26.50 16 12 C 0.70 22.47 8.29 179.06 1.49 23.96 16 13 O -0.64 -26.23 15.77 -3.96 -0.06 -26.29 16 14 N -0.62 -12.80 2.97 -836.88 -2.49 -15.29 16 15 C 0.10 1.22 6.38 86.36 0.55 1.77 16 16 C -0.12 -1.15 6.08 30.67 0.19 -0.96 16 17 C -0.12 -1.16 5.49 30.62 0.17 -0.99 16 18 C 0.13 2.09 3.27 45.07 0.15 2.23 16 19 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 20 N -0.28 -5.18 3.26 -326.79 -1.06 -6.24 16 21 C -0.04 -0.47 10.68 83.49 0.89 0.42 16 22 C -0.06 -0.98 12.05 83.73 1.01 0.02 16 23 N -0.31 -7.93 12.41 -58.26 -0.72 -8.65 16 24 N -0.13 -3.36 13.16 37.02 0.49 -2.87 16 25 C 0.13 2.21 5.48 86.36 0.47 2.68 16 26 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 27 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.41 11.02 5.97 -92.70 -0.55 10.46 16 32 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.09 1.17 5.65 -2.39 -0.01 1.15 16 34 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.10 0.59 8.14 -2.38 -0.02 0.57 16 37 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.23 0.83 7.17 -2.91 -0.02 0.80 16 39 H 0.22 1.83 8.06 -2.91 -0.02 1.80 16 40 H 0.08 1.85 7.00 -2.39 -0.02 1.83 16 41 H 0.11 1.11 6.92 -2.39 -0.02 1.10 16 Total: -1.00 -76.63 338.41 2.58 -74.05 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: 0.49 Total: 10.39 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: 6.24 Total: 9.02 kcal Atomic # 7 Polarization: -105.96 SS G_CDS: -6.12 Total: -112.08 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -0.06 Total: -26.29 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.90 kcal Total: -76.63 2.58 -74.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425508040.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.188 kcal (2) G-P(sol) polarization free energy of solvation -76.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds