Wall clock time and date at job start Tue Mar 31 2020 03:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30831 * 125.95974 * 2 1 4 4 C 1.33245 * 109.82625 * 179.97438 * 3 2 1 5 5 C 1.50701 * 125.52582 * 179.97438 * 4 3 2 6 6 H 1.08997 * 109.49761 * 0.07625 * 5 4 3 7 7 C 1.53047 * 109.49089 * 120.16322 * 5 4 3 8 8 C 1.53045 * 109.53426 * 181.31861 * 7 5 4 9 9 C 1.53627 * 109.23941 * 298.51214 * 8 7 5 10 10 N 1.46923 * 108.54408 * 54.86025 * 9 8 7 11 11 C 1.34778 * 120.63191 * 126.36420 * 10 9 8 12 12 O 1.21586 * 120.00021 * 4.74573 * 11 10 9 13 13 N 1.34775 * 119.99817 * 184.46777 * 11 10 9 14 14 C 1.46507 * 120.00024 * 175.20268 * 13 11 10 15 15 C 1.50693 * 109.47225 * 180.02562 * 14 13 11 16 16 H 1.08004 * 120.00249 * 359.97438 * 15 14 13 17 17 C 1.37881 * 120.00211 * 180.02562 * 15 14 13 18 18 N 1.31507 * 120.00361 * 180.02562 * 17 15 14 19 19 Si 1.86805 * 119.99578 * 359.97438 * 17 15 14 20 20 H 1.48493 * 109.46943 * 90.00040 * 19 17 15 21 21 H 1.48497 * 109.46936 * 210.00322 * 19 17 15 22 22 H 1.48502 * 109.47058 * 330.00312 * 19 17 15 23 23 C 1.46932 * 118.73700 * 306.08979 * 10 9 8 24 24 N 1.30714 * 108.94420 * 0.26694 * 4 3 2 25 25 N 1.34423 * 125.95989 * 179.97438 * 2 1 3 26 26 H 0.97005 * 126.82581 * 0.02699 * 25 2 1 27 27 H 1.09003 * 109.46960 * 89.99825 * 1 2 3 28 28 H 1.08998 * 109.46831 * 210.00108 * 1 2 3 29 29 H 1.08997 * 109.46627 * 330.00466 * 1 2 3 30 30 H 1.08994 * 109.46139 * 301.33869 * 7 5 4 31 31 H 1.08996 * 109.45719 * 61.31476 * 7 5 4 32 32 H 1.09000 * 109.49687 * 58.58999 * 8 7 5 33 33 H 1.08995 * 109.49616 * 178.65402 * 8 7 5 34 34 H 1.08991 * 109.74373 * 295.11560 * 9 8 7 35 35 H 1.09005 * 109.66060 * 174.54672 * 9 8 7 36 36 H 0.97002 * 120.00445 * 355.21036 * 13 11 10 37 37 H 1.09000 * 109.47128 * 300.00363 * 14 13 11 38 38 H 1.08997 * 109.46697 * 59.99902 * 14 13 11 39 39 H 0.97001 * 120.00240 * 179.97438 * 18 17 15 40 40 H 1.09005 * 109.58363 * 173.64770 * 23 10 9 41 41 H 1.08992 * 109.58902 * 293.93181 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5553 0.6887 0.0006 5 6 4.7373 1.6236 0.0002 6 1 4.3853 2.6551 0.0008 7 6 5.5872 1.3726 1.2480 8 6 6.7699 2.3438 1.2654 9 6 7.6452 2.0979 0.0270 10 7 6.7997 2.1988 -1.1703 11 6 7.1334 3.0282 -2.1788 12 8 8.1853 3.6370 -2.1424 13 7 6.3038 3.1786 -3.2303 14 6 6.6151 4.1575 -4.2749 15 6 5.5374 4.1285 -5.3278 16 1 4.7041 3.4486 -5.2290 17 6 5.6157 4.9692 -6.4178 18 7 4.6749 4.9442 -7.3364 19 14 7.0574 6.1446 -6.5890 20 1 8.1532 5.4781 -7.3374 21 1 6.6217 7.3583 -7.3255 22 1 7.5433 6.5318 -5.2402 23 6 5.5865 1.3737 -1.2500 24 7 3.6194 -0.6168 -0.0048 25 7 2.2964 -1.0881 0.0005 26 1 2.0093 -2.0147 0.0005 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3632 0.8900 0.5138 30 1 4.9784 1.5259 2.1389 31 1 5.9591 0.3481 1.2340 32 1 6.3992 3.3688 1.2542 33 1 7.3614 2.1806 2.1662 34 1 8.0866 1.1027 0.0799 35 1 8.4347 2.8481 -0.0190 36 1 5.5005 2.6388 -3.2954 37 1 6.6667 5.1537 -3.8356 38 1 7.5745 3.9108 -4.7296 39 1 4.7298 5.5359 -8.1031 40 1 5.0172 1.6459 -2.1388 41 1 5.8634 0.3208 -1.3017 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426433573.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:16 Heat of formation + Delta-G solvation = 53.543293 kcal Electronic energy + Delta-G solvation = -23508.071283 eV Core-core repulsion = 20038.678063 eV Total energy + Delta-G solvation = -3469.393220 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.38807 -39.92175 -37.42993 -34.39034 -33.79996 -32.70967 -32.57707 -31.93413 -30.81824 -28.11675 -27.79711 -25.08971 -24.32423 -22.41336 -21.54528 -20.89344 -20.06264 -19.17040 -18.28155 -17.84266 -16.40477 -16.04062 -15.65236 -15.26131 -14.69618 -14.57406 -14.43591 -14.24993 -13.82735 -13.64144 -13.35456 -13.19203 -13.12164 -12.91460 -12.53548 -12.20288 -12.07443 -12.00823 -11.48167 -11.07228 -10.93935 -10.90119 -10.74691 -10.68926 -10.24898 -10.18565 -9.91144 -9.70008 -9.42945 -9.38941 -8.72142 -8.47653 -7.89688 -6.15311 -4.16733 1.36201 2.39253 2.64658 3.12354 3.32601 3.39088 3.48328 3.70507 3.82016 4.32095 4.39338 4.43804 4.61275 4.78255 4.78854 4.96508 5.00863 5.05364 5.20451 5.24111 5.28110 5.43144 5.45943 5.60626 5.75548 5.78443 5.86467 5.94280 6.02941 6.07560 6.19929 6.30816 6.69452 6.80449 6.88692 7.18517 7.31028 7.45730 7.56424 7.91134 8.31518 8.72379 8.85480 9.24652 9.46410 10.96790 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.014364 B = 0.004214 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.904713 B = 6642.816956 C = 8272.802366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.282 3.718 3 N -0.533 5.533 4 C 0.242 3.758 5 C -0.009 4.009 6 H 0.105 0.895 7 C -0.105 4.105 8 C -0.133 4.133 9 C 0.129 3.871 10 N -0.635 5.635 11 C 0.701 3.299 12 O -0.600 6.600 13 N -0.723 5.723 14 C 0.237 3.763 15 C -0.541 4.541 16 H 0.078 0.922 17 C 0.078 3.922 18 N -0.894 5.894 19 Si 0.877 3.123 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.260 1.260 23 C 0.126 3.874 24 N -0.309 5.309 25 N -0.485 5.485 26 H 0.439 0.561 27 H 0.094 0.906 28 H 0.081 0.919 29 H 0.099 0.901 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.095 0.905 36 H 0.391 0.609 37 H 0.023 0.977 38 H 0.019 0.981 39 H 0.267 0.733 40 H 0.084 0.916 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.772 -13.161 19.239 24.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.004 3.996 3 N -0.262 5.262 4 C -0.042 4.042 5 C -0.031 4.031 6 H 0.123 0.877 7 C -0.144 4.144 8 C -0.172 4.172 9 C 0.006 3.994 10 N -0.373 5.373 11 C 0.402 3.598 12 O -0.480 6.480 13 N -0.377 5.377 14 C 0.115 3.885 15 C -0.579 4.579 16 H 0.096 0.904 17 C -0.126 4.126 18 N -0.532 5.532 19 Si 0.704 3.296 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.184 1.184 23 C 0.000 4.000 24 N -0.138 5.138 25 N -0.203 5.203 26 H 0.284 0.716 27 H 0.113 0.887 28 H 0.100 0.900 29 H 0.117 0.883 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.113 0.887 36 H 0.227 0.773 37 H 0.041 0.959 38 H 0.037 0.963 39 H 0.077 0.923 40 H 0.102 0.898 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.488 -12.591 19.024 23.464 hybrid contribution -0.337 -0.425 -0.320 0.629 sum -5.825 -13.016 18.704 23.520 Atomic orbital electron populations 1.20410 0.83617 1.04897 1.04818 1.24432 0.96682 0.82843 0.95679 1.70417 1.01383 1.29455 1.24975 1.24028 0.92972 0.89905 0.97248 1.19968 0.88696 0.97423 0.97052 0.87696 1.21518 0.96363 1.00391 0.96133 1.22022 0.96802 1.00113 0.98233 1.21489 0.93200 1.02194 0.82556 1.47221 1.25854 1.45063 1.19184 1.15994 0.83959 0.79700 0.80140 1.90845 1.24506 1.52269 1.80332 1.45591 1.25834 1.43355 1.22946 1.19368 0.96778 0.87150 0.85239 1.21092 1.08232 1.23436 1.05103 0.90420 1.24771 0.96157 0.96586 0.95050 1.69881 1.33430 1.38718 1.11144 0.86809 0.82760 0.80778 0.79303 1.19879 1.20975 1.18403 1.21504 0.85797 0.95717 0.96964 1.77982 0.96488 1.12339 1.27005 1.48004 1.04401 1.09986 1.57954 0.71571 0.88749 0.89972 0.88277 0.91635 0.91025 0.91072 0.90471 0.92031 0.88710 0.77286 0.95940 0.96273 0.92333 0.89791 0.90861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.38 10.51 36.01 0.38 -0.01 16 2 C 0.28 2.72 8.24 -155.70 -1.28 1.44 16 3 N -0.53 -7.08 11.19 -8.16 -0.09 -7.17 16 4 C 0.24 3.18 6.65 -156.85 -1.04 2.14 16 5 C -0.01 -0.12 2.81 -91.65 -0.26 -0.37 16 6 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 7 C -0.11 -1.11 5.15 -26.68 -0.14 -1.25 16 8 C -0.13 -1.40 6.10 -26.38 -0.16 -1.56 16 9 C 0.13 1.70 6.45 -3.49 -0.02 1.68 16 10 N -0.63 -10.21 2.97 -178.23 -0.53 -10.74 16 11 C 0.70 14.74 8.30 -86.92 -0.72 14.01 16 12 O -0.60 -14.65 15.78 5.29 0.08 -14.56 16 13 N -0.72 -15.96 5.46 -66.41 -0.36 -16.33 16 14 C 0.24 6.13 4.50 -5.19 -0.02 6.11 16 15 C -0.54 -15.33 9.83 -34.44 -0.34 -15.67 16 16 H 0.08 2.30 7.84 -52.48 -0.41 1.89 16 17 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 18 N -0.89 -27.04 13.96 55.43 0.77 -26.27 16 19 Si 0.88 21.96 27.47 -169.99 -4.67 17.30 16 20 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.26 -6.48 6.54 56.52 0.37 -6.11 16 23 C 0.13 1.75 5.69 -3.71 -0.02 1.73 16 24 N -0.31 -3.82 12.80 32.42 0.41 -3.40 16 25 N -0.49 -4.39 7.45 32.62 0.24 -4.15 16 26 H 0.44 2.26 8.96 -182.33 -1.63 0.62 16 27 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.09 1.40 7.03 -51.93 -0.37 1.04 16 36 H 0.39 7.89 5.78 -40.82 -0.24 7.66 16 37 H 0.02 0.61 7.20 -51.93 -0.37 0.24 16 38 H 0.02 0.52 7.57 -51.93 -0.39 0.12 16 39 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 40 H 0.08 1.26 5.57 -51.93 -0.29 0.97 16 41 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 337.19 15.07 5.08 5.08 Total: -1.00 -36.40 337.19 -9.88 -46.28 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -7.10 Total: 3.56 kcal Atomic # 6 Polarization: 14.14 SS G_CDS: -3.73 Total: 10.41 kcal Atomic # 7 Polarization: -68.51 SS G_CDS: 0.45 Total: -68.06 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: 0.08 Total: -14.56 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.30 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -36.40 -9.88 -46.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426433573.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.821 kcal (2) G-P(sol) polarization free energy of solvation -36.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds