Wall clock time and date at job start Tue Mar 31 2020 03:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30828 * 125.96163 * 2 1 4 4 C 1.33247 * 109.83188 * 180.02562 * 3 2 1 5 5 C 1.50697 * 125.52863 * 180.02562 * 4 3 2 6 6 H 1.09003 * 109.52287 * 0.07764 * 5 4 3 7 7 C 1.53046 * 109.49673 * 239.99685 * 5 4 3 8 8 C 1.53035 * 109.53886 * 178.68200 * 7 5 4 9 9 C 1.53199 * 109.31016 * 61.36695 * 8 7 5 10 10 N 1.46922 * 108.77517 * 305.35998 * 9 8 7 11 11 C 1.34773 * 120.63802 * 233.58904 * 10 9 8 12 12 O 1.21593 * 119.99276 * 354.96377 * 11 10 9 13 13 N 1.34773 * 120.00757 * 174.96833 * 11 10 9 14 14 C 1.46501 * 120.00474 * 185.07523 * 13 11 10 15 15 C 1.50695 * 109.47359 * 179.97438 * 14 13 11 16 16 H 1.08004 * 119.99715 * 359.97438 * 15 14 13 17 17 C 1.37873 * 119.99894 * 179.97438 * 15 14 13 18 18 N 1.31508 * 120.00494 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99986 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47123 * 59.99726 * 19 17 15 21 21 H 1.48496 * 109.47408 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47007 * 300.00288 * 19 17 15 23 23 C 1.46930 * 118.73587 * 53.61202 * 10 9 8 24 24 N 1.30722 * 108.94333 * 0.25763 * 4 3 2 25 25 N 1.34435 * 125.96046 * 180.02562 * 2 1 3 26 26 H 0.97001 * 126.82316 * 359.97244 * 25 2 1 27 27 H 1.09003 * 109.46703 * 90.00821 * 1 2 3 28 28 H 1.08999 * 109.47044 * 210.00056 * 1 2 3 29 29 H 1.08995 * 109.47415 * 330.00448 * 1 2 3 30 30 H 1.09002 * 109.45724 * 298.70275 * 7 5 4 31 31 H 1.09004 * 109.45824 * 58.66324 * 7 5 4 32 32 H 1.08995 * 109.49624 * 181.31563 * 8 7 5 33 33 H 1.08997 * 109.49976 * 301.38527 * 8 7 5 34 34 H 1.08990 * 109.58625 * 65.15373 * 9 8 7 35 35 H 1.08997 * 109.58413 * 185.58031 * 9 8 7 36 36 H 0.97001 * 119.99785 * 5.06661 * 13 11 10 37 37 H 1.08998 * 109.46823 * 300.00087 * 14 13 11 38 38 H 1.09004 * 109.46977 * 59.99105 * 14 13 11 39 39 H 0.96996 * 120.00649 * 179.97438 * 18 17 15 40 40 H 1.09005 * 109.58579 * 186.60087 * 23 10 9 41 41 H 1.09003 * 109.58758 * 66.17897 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0589 0.0000 4 6 3.5553 0.6888 -0.0006 5 6 4.7373 1.6236 -0.0002 6 1 4.3856 2.6554 0.0020 7 6 5.5851 1.3755 -1.2499 8 6 6.7677 2.3467 -1.2672 9 6 7.6422 2.1021 -0.0333 10 7 6.8017 2.1962 1.1681 11 6 7.1371 3.0233 2.1779 12 8 8.1892 3.6317 2.1413 13 7 6.3065 3.1761 3.2282 14 6 6.6170 4.1570 4.2711 15 6 5.5381 4.1305 5.3229 16 1 4.7043 3.4511 5.2242 17 6 5.6156 4.9734 6.4112 18 7 6.6311 5.8002 6.5317 19 14 4.2779 4.9410 7.7148 20 1 4.2050 3.5849 8.3157 21 1 4.5933 5.9343 8.7726 22 1 2.9722 5.2774 7.0925 23 6 5.5887 1.3709 1.2480 24 7 3.6195 -0.6169 -0.0065 25 7 2.2965 -1.0881 -0.0005 26 1 2.0093 -2.0147 -0.0005 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5137 30 1 5.9568 0.3509 -1.2390 31 1 4.9747 1.5308 -2.1396 32 1 7.3579 2.1852 -2.1692 33 1 6.3970 3.3716 -1.2536 34 1 8.0866 1.1087 -0.0916 35 1 8.4293 2.8548 0.0116 36 1 5.5030 2.6366 3.2936 37 1 7.5758 3.9111 4.7273 38 1 6.6693 5.1523 3.8297 39 1 6.6854 6.3935 7.2972 40 1 5.0209 1.6410 2.1384 41 1 5.8657 0.3177 1.2943 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426433574.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:20 Heat of formation + Delta-G solvation = 50.020435 kcal Electronic energy + Delta-G solvation = -23477.351315 eV Core-core repulsion = 20007.805333 eV Total energy + Delta-G solvation = -3469.545983 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.39657 -39.81659 -37.33261 -34.27538 -33.75461 -32.70834 -32.59177 -31.82853 -30.77916 -28.11621 -27.19988 -25.00418 -24.29091 -22.67111 -21.63404 -20.91474 -20.01371 -19.01369 -18.25182 -17.81760 -16.04034 -15.98640 -15.60539 -15.16471 -14.67206 -14.60057 -14.44288 -14.28547 -13.80786 -13.54076 -13.31940 -13.14564 -13.04100 -12.89468 -12.39584 -12.09946 -11.85160 -11.69653 -11.43650 -11.02220 -10.92895 -10.87524 -10.80654 -10.68848 -10.27192 -10.20857 -10.19649 -9.68863 -9.32886 -9.25962 -8.66935 -8.34657 -7.65643 -6.09517 -4.15720 1.34859 2.38088 2.64030 3.21145 3.29810 3.34331 3.36673 3.71753 3.95941 4.31913 4.36854 4.46107 4.66762 4.80767 4.88813 4.99214 5.00463 5.05115 5.26409 5.27634 5.31546 5.41018 5.50278 5.65801 5.79332 5.82608 5.90683 5.97642 6.02946 6.13607 6.21548 6.33912 6.79138 6.83483 7.20546 7.58005 7.60599 7.64480 7.89811 7.92336 8.08549 8.81934 8.96556 9.38294 9.53804 11.00777 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.012196 B = 0.004436 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.321202 B = 6310.900379 C = 8299.253996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.281 3.719 3 N -0.534 5.534 4 C 0.242 3.758 5 C -0.010 4.010 6 H 0.105 0.895 7 C -0.105 4.105 8 C -0.133 4.133 9 C 0.129 3.871 10 N -0.636 5.636 11 C 0.699 3.301 12 O -0.597 6.597 13 N -0.730 5.730 14 C 0.267 3.733 15 C -0.541 4.541 16 H 0.060 0.940 17 C 0.065 3.935 18 N -0.886 5.886 19 Si 0.903 3.097 20 H -0.276 1.276 21 H -0.285 1.285 22 H -0.275 1.275 23 C 0.127 3.873 24 N -0.309 5.309 25 N -0.486 5.486 26 H 0.439 0.561 27 H 0.091 0.909 28 H 0.082 0.918 29 H 0.100 0.900 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.095 0.905 36 H 0.385 0.615 37 H 0.025 0.975 38 H 0.024 0.976 39 H 0.266 0.734 40 H 0.083 0.917 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.301 -14.949 -17.058 25.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.003 3.997 3 N -0.263 5.263 4 C -0.041 4.041 5 C -0.032 4.032 6 H 0.123 0.877 7 C -0.144 4.144 8 C -0.172 4.172 9 C 0.006 3.994 10 N -0.375 5.375 11 C 0.400 3.600 12 O -0.476 6.476 13 N -0.384 5.384 14 C 0.145 3.855 15 C -0.579 4.579 16 H 0.079 0.921 17 C -0.139 4.139 18 N -0.523 5.523 19 Si 0.730 3.270 20 H -0.202 1.202 21 H -0.211 1.211 22 H -0.201 1.201 23 C 0.001 3.999 24 N -0.138 5.138 25 N -0.204 5.204 26 H 0.284 0.716 27 H 0.109 0.891 28 H 0.101 0.899 29 H 0.119 0.881 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.113 0.887 36 H 0.220 0.780 37 H 0.043 0.957 38 H 0.042 0.958 39 H 0.076 0.924 40 H 0.101 0.899 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.856 -14.304 -16.895 24.232 hybrid contribution -1.651 -0.982 0.795 2.079 sum -11.507 -15.286 -16.100 25.006 Atomic orbital electron populations 1.20402 0.83653 1.05190 1.04474 1.24427 0.96662 0.82870 0.95779 1.70416 1.01416 1.29451 1.24977 1.24059 0.92966 0.89911 0.97136 1.19989 0.88678 0.97364 0.97188 0.87720 1.21515 0.96403 1.00402 0.96052 1.21950 0.96813 1.00097 0.98330 1.21373 0.93317 1.02159 0.82575 1.47254 1.25925 1.45398 1.18958 1.16032 0.84113 0.79677 0.80166 1.90857 1.24459 1.52064 1.80220 1.45901 1.25380 1.43494 1.23585 1.18979 0.96642 0.86346 0.83490 1.21182 1.07986 1.22243 1.06505 0.92147 1.24919 0.96035 0.94976 0.97962 1.69964 1.29684 1.22543 1.30136 0.86495 0.81752 0.77869 0.80895 1.20156 1.21066 1.20078 1.21474 0.85911 0.95660 0.96817 1.77998 0.96416 1.12356 1.27002 1.48015 1.04430 1.09973 1.57969 0.71591 0.89055 0.89877 0.88149 0.91059 0.91709 0.90487 0.91091 0.92193 0.88705 0.78000 0.95652 0.95775 0.92446 0.89907 0.91031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.36 10.51 36.01 0.38 0.02 16 2 C 0.28 2.66 8.24 -155.69 -1.28 1.37 16 3 N -0.53 -7.00 11.19 -8.16 -0.09 -7.09 16 4 C 0.24 3.19 6.65 -156.84 -1.04 2.15 16 5 C -0.01 -0.13 2.81 -91.65 -0.26 -0.39 16 6 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 7 C -0.11 -1.14 5.15 -26.69 -0.14 -1.28 16 8 C -0.13 -1.46 6.08 -26.61 -0.16 -1.63 16 9 C 0.13 1.79 6.42 -3.71 -0.02 1.77 16 10 N -0.64 -10.65 2.97 -178.50 -0.53 -11.18 16 11 C 0.70 15.38 8.30 -86.92 -0.72 14.66 16 12 O -0.60 -15.43 15.79 5.28 0.08 -15.34 16 13 N -0.73 -16.70 5.46 -66.42 -0.36 -17.06 16 14 C 0.27 7.40 5.43 -5.20 -0.03 7.37 16 15 C -0.54 -15.18 9.28 -34.44 -0.32 -15.50 16 16 H 0.06 1.60 7.60 -52.48 -0.40 1.20 16 17 C 0.06 1.83 5.46 -17.82 -0.10 1.74 16 18 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 19 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 C 0.13 1.81 5.70 -3.71 -0.02 1.79 16 24 N -0.31 -3.80 12.80 32.42 0.41 -3.39 16 25 N -0.49 -4.32 7.45 32.62 0.24 -4.08 16 26 H 0.44 2.19 8.96 -182.33 -1.63 0.56 16 27 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.09 1.48 7.03 -51.93 -0.37 1.12 16 36 H 0.39 7.85 5.78 -40.82 -0.24 7.62 16 37 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 40 H 0.08 1.25 5.57 -51.93 -0.29 0.96 16 41 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 340.76 15.07 5.14 5.14 Total: -1.00 -36.37 340.76 -10.24 -46.61 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -7.13 Total: 3.92 kcal Atomic # 6 Polarization: 15.79 SS G_CDS: -3.72 Total: 12.07 kcal Atomic # 7 Polarization: -69.11 SS G_CDS: 0.41 Total: -68.70 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: 0.08 Total: -15.34 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -36.37 -10.24 -46.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426433574.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.630 kcal (2) G-P(sol) polarization free energy of solvation -36.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds