Wall clock time and date at job start Tue Mar 31 2020 03:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36831 * 119.68475 * 2 1 4 4 C 1.35022 * 119.68207 * 180.27700 * 3 2 1 5 5 C 1.50699 * 120.44684 * 179.72761 * 4 3 2 6 6 N 1.46905 * 109.46804 * 94.72063 * 5 4 3 7 7 C 1.46902 * 110.99767 * 180.02562 * 6 5 4 8 8 C 1.53007 * 109.47323 * 185.35276 * 7 6 5 9 9 C 1.50699 * 115.54898 * 65.04606 * 8 7 6 10 10 H 1.07992 * 120.00574 * 265.45349 * 9 8 7 11 11 C 1.37878 * 119.99354 * 85.45177 * 9 8 7 12 12 N 1.31516 * 120.00478 * 353.59554 * 11 9 8 13 13 Si 1.86803 * 119.99744 * 173.60073 * 11 9 8 14 14 H 1.48503 * 109.47162 * 59.99841 * 13 11 9 15 15 H 1.48500 * 109.47019 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47084 * 299.99508 * 13 11 9 17 17 C 1.53001 * 117.49504 * 279.38387 * 8 7 6 18 18 C 1.52998 * 117.49879 * 210.72416 * 8 7 6 19 19 C 1.41575 * 119.11277 * 359.45571 * 4 3 2 20 20 O 1.21788 * 120.30618 * 180.25451 * 19 4 3 21 21 N 1.34837 * 119.38439 * 0.27732 * 19 4 3 22 22 C 1.46503 * 119.86313 * 180.02562 * 21 19 4 23 23 C 1.34543 * 119.69048 * 179.73068 * 2 1 3 24 24 O 1.21587 * 119.53548 * 0.02562 * 23 2 1 25 25 H 1.09004 * 109.47062 * 180.27456 * 1 2 3 26 26 H 1.08995 * 109.47700 * 300.27028 * 1 2 3 27 27 H 1.09001 * 109.47076 * 60.27426 * 1 2 3 28 28 H 1.08002 * 120.16310 * 0.02562 * 3 2 1 29 29 H 1.08991 * 109.47583 * 214.72043 * 5 4 3 30 30 H 1.08999 * 109.47109 * 334.72654 * 5 4 3 31 31 H 1.00893 * 111.00712 * 303.95466 * 6 5 4 32 32 H 1.09000 * 109.47421 * 305.35211 * 7 6 5 33 33 H 1.09008 * 109.47080 * 65.35447 * 7 6 5 34 34 H 0.96995 * 120.00373 * 180.02562 * 12 11 9 35 35 H 1.08998 * 117.50280 * 359.97438 * 17 8 7 36 36 H 1.09002 * 117.49621 * 145.01648 * 17 8 7 37 37 H 1.09001 * 117.49194 * 214.97612 * 18 8 7 38 38 H 1.08994 * 117.50076 * 359.97438 * 18 8 7 39 39 H 1.09000 * 109.47321 * 90.00450 * 22 21 19 40 40 H 1.09007 * 109.46394 * 209.99653 * 22 21 19 41 41 H 1.08998 * 109.47411 * 329.99513 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1426 1.1887 0.0000 4 6 3.4928 1.1887 -0.0057 5 6 4.2565 2.4878 -0.0119 6 7 4.6087 2.8554 1.3661 7 6 5.3553 4.1201 1.3991 8 6 5.8188 4.4016 2.8299 9 6 6.8151 3.4223 3.3949 10 1 6.4743 2.5880 3.9900 11 6 8.1617 3.5914 3.1519 12 7 8.5681 4.5307 2.3259 13 14 9.4090 2.4862 3.9959 14 1 9.1515 1.0726 3.6210 15 1 10.7787 2.8695 3.5690 16 1 9.2884 2.6377 5.4682 17 6 4.7996 5.0092 3.7958 18 6 5.9477 5.8655 3.2555 19 6 4.1816 -0.0482 0.0002 20 8 5.3992 -0.0736 0.0000 21 7 3.4770 -1.1978 0.0057 22 6 4.1791 -2.4837 0.0124 23 6 2.1314 -1.1688 0.0055 24 8 1.5093 -2.2134 0.0099 25 1 -0.3633 -1.0277 0.0049 26 1 -0.3634 0.5180 0.8875 27 1 -0.3633 0.5096 -0.8924 28 1 1.6001 2.1226 0.0004 29 1 5.1663 2.3717 -0.6008 30 1 3.6377 3.2709 -0.4499 31 1 3.7863 2.9061 1.9483 32 1 6.2233 4.0469 0.7438 33 1 4.7111 4.9313 1.0596 34 1 9.5154 4.6494 2.1547 35 1 3.7992 5.2088 3.4120 36 1 4.8501 4.7009 4.8401 37 1 6.7530 6.1202 3.9446 38 1 5.7028 6.6281 2.5163 39 1 4.3527 -2.7975 1.0417 40 1 3.5721 -3.2316 -0.4980 41 1 5.1345 -2.3787 -0.5017 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430032838.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:19 Heat of formation + Delta-G solvation = 3.964065 kcal Electronic energy + Delta-G solvation = -23818.377811 eV Core-core repulsion = 20314.541924 eV Total energy + Delta-G solvation = -3503.835888 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.33004 -39.04305 -37.59637 -36.90360 -35.20640 -34.70268 -31.85687 -31.60769 -28.60766 -27.21792 -26.21106 -25.19308 -23.76423 -23.34554 -21.85703 -20.94493 -19.43989 -18.95146 -17.56897 -17.17572 -16.89223 -16.03420 -15.60847 -15.13218 -14.90615 -14.74510 -14.35497 -14.12847 -13.95123 -13.54169 -13.41232 -13.28359 -12.95742 -12.83655 -12.54648 -12.29504 -11.53358 -11.44436 -11.35959 -11.12427 -10.96403 -10.81294 -10.59925 -10.38637 -10.12280 -10.05274 -9.75080 -9.40997 -8.73859 -8.50287 -8.27427 -7.98086 -7.47993 -5.85931 -3.86485 0.97337 1.84828 1.96752 2.93485 3.45210 3.47338 3.48295 3.53497 4.26015 4.42350 4.58148 4.84164 4.90267 4.99702 5.07114 5.26615 5.29089 5.32375 5.34940 5.44591 5.49127 5.53281 5.64629 5.89774 5.94145 6.18154 6.25021 6.32280 6.37605 6.52851 6.68407 6.77089 6.93753 7.16683 7.17118 7.50668 7.52245 7.64356 7.96597 8.00150 8.07601 8.19795 8.64331 9.11541 9.76637 11.24146 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.017885 B = 0.004430 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.204136 B = 6319.012867 C = 7321.238610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.538 5.538 3 C 0.152 3.848 4 C -0.228 4.228 5 C 0.131 3.869 6 N -0.661 5.661 7 C 0.109 3.891 8 C 0.054 3.946 9 C -0.468 4.468 10 H 0.057 0.943 11 C 0.069 3.931 12 N -0.887 5.887 13 Si 0.887 3.113 14 H -0.276 1.276 15 H -0.290 1.290 16 H -0.280 1.280 17 C -0.216 4.216 18 C -0.158 4.158 19 C 0.549 3.451 20 O -0.480 6.480 21 N -0.559 5.559 22 C 0.082 3.918 23 C 0.694 3.306 24 O -0.552 6.552 25 H 0.102 0.898 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.174 0.826 29 H 0.088 0.912 30 H 0.031 0.969 31 H 0.326 0.674 32 H 0.078 0.922 33 H -0.005 1.005 34 H 0.257 0.743 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.060 0.940 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.973 -6.432 -7.476 19.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.259 5.259 3 C 0.029 3.971 4 C -0.238 4.238 5 C 0.001 3.999 6 N -0.291 5.291 7 C -0.019 4.019 8 C 0.053 3.947 9 C -0.506 4.506 10 H 0.075 0.925 11 C -0.133 4.133 12 N -0.525 5.525 13 Si 0.715 3.285 14 H -0.202 1.202 15 H -0.215 1.215 16 H -0.206 1.206 17 C -0.254 4.254 18 C -0.196 4.196 19 C 0.343 3.657 20 O -0.351 6.351 21 N -0.303 5.303 22 C -0.060 4.060 23 C 0.397 3.603 24 O -0.427 6.427 25 H 0.120 0.880 26 H 0.098 0.902 27 H 0.097 0.903 28 H 0.191 0.809 29 H 0.106 0.894 30 H 0.049 0.951 31 H 0.143 0.857 32 H 0.097 0.903 33 H 0.013 0.987 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.106 0.894 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -15.916 -7.439 -7.559 19.126 hybrid contribution -0.011 0.202 0.323 0.380 sum -15.927 -7.238 -7.236 18.932 Atomic orbital electron populations 1.22093 0.75081 1.06113 1.03265 1.44509 1.09190 1.04309 1.67895 1.22095 0.92805 0.89559 0.92649 1.20626 0.92236 0.96795 1.14111 1.20391 0.98061 0.88585 0.92896 1.60230 1.26193 1.35880 1.06799 1.21563 0.95499 0.85665 0.99200 1.18816 0.94478 0.92101 0.89315 1.20228 0.89518 1.09516 1.31303 0.92469 1.24899 0.98258 0.95204 0.94893 1.69986 1.14927 1.32935 1.34608 0.86746 0.80451 0.81530 0.79786 1.20171 1.21547 1.20567 1.22987 0.92925 1.09472 0.99981 1.22511 0.98780 0.95462 1.02849 1.17162 0.88199 0.83262 0.77084 1.90953 1.12406 1.86444 1.45340 1.46409 1.05766 1.10870 1.67304 1.21861 0.98021 0.82164 1.03933 1.15867 0.81881 0.84087 0.78455 1.90965 1.66249 1.30064 1.55452 0.87969 0.90185 0.90302 0.80908 0.89351 0.95114 0.85695 0.90316 0.98743 0.93340 0.92295 0.90618 0.90095 0.92171 0.90904 0.89404 0.88881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.45 10.59 59.85 0.63 1.08 16 2 N -0.54 -5.32 3.01 -128.98 -0.39 -5.71 16 3 C 0.15 1.46 10.07 -16.46 -0.17 1.29 16 4 C -0.23 -3.15 5.40 -104.49 -0.56 -3.71 16 5 C 0.13 2.04 5.57 -4.97 -0.03 2.01 16 6 N -0.66 -12.71 6.37 -115.05 -0.73 -13.44 16 7 C 0.11 2.39 5.51 -3.82 -0.02 2.37 16 8 C 0.05 1.31 1.55 -155.66 -0.24 1.07 16 9 C -0.47 -13.07 8.74 -34.44 -0.30 -13.37 16 10 H 0.06 1.64 7.82 -52.49 -0.41 1.23 16 11 C 0.07 1.96 5.39 -17.82 -0.10 1.87 16 12 N -0.89 -25.75 12.92 55.43 0.72 -25.03 16 13 Si 0.89 22.35 29.54 -169.99 -5.02 17.32 16 14 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 15 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 16 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 17 C -0.22 -4.63 9.96 -26.69 -0.27 -4.89 16 18 C -0.16 -3.70 9.41 -26.69 -0.25 -3.95 16 19 C 0.55 9.05 7.43 -14.96 -0.11 8.94 16 20 O -0.48 -9.89 15.96 5.11 0.08 -9.81 16 21 N -0.56 -7.97 2.96 -131.49 -0.39 -8.36 16 22 C 0.08 0.99 10.13 59.85 0.61 1.60 16 23 C 0.69 9.11 8.12 -87.29 -0.71 8.40 16 24 O -0.55 -8.06 15.10 5.29 0.08 -7.98 16 25 H 0.10 0.71 6.84 -51.93 -0.36 0.36 16 26 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 29 H 0.09 1.59 7.80 -51.93 -0.40 1.19 16 30 H 0.03 0.39 8.05 -51.93 -0.42 -0.03 16 31 H 0.33 5.66 8.78 -39.30 -0.34 5.31 16 32 H 0.08 1.98 8.13 -51.93 -0.42 1.55 16 33 H -0.01 -0.11 8.09 -51.92 -0.42 -0.53 16 34 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.08 1.64 8.14 -51.93 -0.42 1.21 16 37 H 0.08 2.04 8.14 -51.93 -0.42 1.62 16 38 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.09 0.94 7.39 -51.92 -0.38 0.55 16 41 H 0.09 1.13 7.42 -51.93 -0.39 0.74 16 LS Contribution 348.73 15.07 5.26 5.26 Total: -1.00 -34.68 348.73 -7.98 -42.66 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -6.06 Total: 2.39 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: -1.51 Total: 2.70 kcal Atomic # 7 Polarization: -51.75 SS G_CDS: -0.79 Total: -52.54 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: 0.16 Total: -17.79 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.68 -7.98 -42.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430032838.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.620 kcal (2) G-P(sol) polarization free energy of solvation -34.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds