Wall clock time and date at job start Tue Mar 31 2020 03:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36831 * 119.68475 * 2 1 4 4 C 1.35022 * 119.68207 * 180.27700 * 3 2 1 5 5 C 1.50699 * 120.44684 * 179.72761 * 4 3 2 6 6 N 1.46905 * 109.46804 * 94.72063 * 5 4 3 7 7 C 1.46902 * 110.99767 * 180.02562 * 6 5 4 8 8 C 1.53007 * 109.47323 * 185.35276 * 7 6 5 9 9 C 1.50699 * 115.54898 * 65.04606 * 8 7 6 10 10 H 1.07992 * 120.00574 * 265.45349 * 9 8 7 11 11 C 1.37878 * 119.99354 * 85.45177 * 9 8 7 12 12 N 1.31516 * 120.00478 * 353.59554 * 11 9 8 13 13 Si 1.86803 * 119.99744 * 173.60073 * 11 9 8 14 14 H 1.48503 * 109.47162 * 59.99841 * 13 11 9 15 15 H 1.48500 * 109.47019 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47084 * 299.99508 * 13 11 9 17 17 C 1.53001 * 117.49504 * 279.38387 * 8 7 6 18 18 C 1.52998 * 117.49879 * 210.72416 * 8 7 6 19 19 C 1.41575 * 119.11277 * 359.45571 * 4 3 2 20 20 O 1.21788 * 120.30618 * 180.25451 * 19 4 3 21 21 N 1.34837 * 119.38439 * 0.27732 * 19 4 3 22 22 C 1.46503 * 119.86313 * 180.02562 * 21 19 4 23 23 C 1.34543 * 119.69048 * 179.73068 * 2 1 3 24 24 O 1.21587 * 119.53548 * 0.02562 * 23 2 1 25 25 H 1.09004 * 109.47062 * 180.27456 * 1 2 3 26 26 H 1.08995 * 109.47700 * 300.27028 * 1 2 3 27 27 H 1.09001 * 109.47076 * 60.27426 * 1 2 3 28 28 H 1.08002 * 120.16310 * 0.02562 * 3 2 1 29 29 H 1.08991 * 109.47583 * 214.72043 * 5 4 3 30 30 H 1.08999 * 109.47109 * 334.72654 * 5 4 3 31 31 H 1.00893 * 111.00712 * 303.95466 * 6 5 4 32 32 H 1.09000 * 109.47421 * 305.35211 * 7 6 5 33 33 H 1.09008 * 109.47080 * 65.35447 * 7 6 5 34 34 H 0.96995 * 120.00373 * 180.02562 * 12 11 9 35 35 H 1.08998 * 117.50280 * 359.97438 * 17 8 7 36 36 H 1.09002 * 117.49621 * 145.01648 * 17 8 7 37 37 H 1.09001 * 117.49194 * 214.97612 * 18 8 7 38 38 H 1.08994 * 117.50076 * 359.97438 * 18 8 7 39 39 H 1.09000 * 109.47321 * 90.00450 * 22 21 19 40 40 H 1.09007 * 109.46394 * 209.99653 * 22 21 19 41 41 H 1.08998 * 109.47411 * 329.99513 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1426 1.1887 0.0000 4 6 3.4928 1.1887 -0.0057 5 6 4.2565 2.4878 -0.0119 6 7 4.6087 2.8554 1.3661 7 6 5.3553 4.1201 1.3991 8 6 5.8188 4.4016 2.8299 9 6 6.8151 3.4223 3.3949 10 1 6.4743 2.5880 3.9900 11 6 8.1617 3.5914 3.1519 12 7 8.5681 4.5307 2.3259 13 14 9.4090 2.4862 3.9959 14 1 9.1515 1.0726 3.6210 15 1 10.7787 2.8695 3.5690 16 1 9.2884 2.6377 5.4682 17 6 4.7996 5.0092 3.7958 18 6 5.9477 5.8655 3.2555 19 6 4.1816 -0.0482 0.0002 20 8 5.3992 -0.0736 0.0000 21 7 3.4770 -1.1978 0.0057 22 6 4.1791 -2.4837 0.0124 23 6 2.1314 -1.1688 0.0055 24 8 1.5093 -2.2134 0.0099 25 1 -0.3633 -1.0277 0.0049 26 1 -0.3634 0.5180 0.8875 27 1 -0.3633 0.5096 -0.8924 28 1 1.6001 2.1226 0.0004 29 1 5.1663 2.3717 -0.6008 30 1 3.6377 3.2709 -0.4499 31 1 3.7863 2.9061 1.9483 32 1 6.2233 4.0469 0.7438 33 1 4.7111 4.9313 1.0596 34 1 9.5154 4.6494 2.1547 35 1 3.7992 5.2088 3.4120 36 1 4.8501 4.7009 4.8401 37 1 6.7530 6.1202 3.9446 38 1 5.7028 6.6281 2.5163 39 1 4.3527 -2.7975 1.0417 40 1 3.5721 -3.2316 -0.4980 41 1 5.1345 -2.3787 -0.5017 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430032838.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:18 Heat of formation + Delta-G solvation = -20.671443 kcal Electronic energy + Delta-G solvation = -23819.446087 eV Core-core repulsion = 20314.541924 eV Total energy + Delta-G solvation = -3504.904164 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.35741 -40.18768 -38.86741 -38.34330 -36.39785 -36.04445 -33.88227 -32.82985 -29.56889 -28.18120 -27.66028 -26.95718 -24.96809 -24.57557 -23.08213 -22.63280 -20.85876 -20.44280 -18.59144 -18.20554 -18.13771 -17.69791 -16.72268 -16.57351 -16.34003 -15.89045 -15.81302 -15.42371 -15.25127 -15.03397 -14.69544 -14.51604 -14.17518 -13.91422 -13.51596 -13.28733 -13.21870 -13.05710 -12.86947 -12.62849 -12.54513 -12.34977 -12.16183 -12.00667 -11.94466 -11.35818 -11.25880 -10.89194 -10.69905 -10.33109 -9.88061 -9.44257 -8.87453 -8.02095 -6.05931 0.03290 0.87819 0.95228 1.39099 1.42764 1.47941 1.95714 2.38749 2.48482 3.28603 3.36936 3.47627 3.67705 3.88406 4.09072 4.20786 4.27166 4.32720 4.40175 4.44233 4.52181 4.59145 4.64751 4.66112 4.79300 4.82412 4.86039 4.91265 5.02231 5.06566 5.15358 5.25872 5.34556 5.36181 5.71805 5.80902 5.94583 6.14906 6.43239 6.46378 6.57681 6.87768 6.90994 6.97581 7.58480 9.06642 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.017885 B = 0.004430 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.204136 B = 6319.012867 C = 7321.238610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.528 5.528 3 C 0.212 3.788 4 C -0.276 4.276 5 C 0.142 3.858 6 N -0.683 5.683 7 C 0.126 3.874 8 C 0.020 3.980 9 C -0.477 4.477 10 H 0.039 0.961 11 C 0.023 3.977 12 N -0.910 5.910 13 Si 0.935 3.065 14 H -0.286 1.286 15 H -0.285 1.285 16 H -0.270 1.270 17 C -0.182 4.182 18 C -0.166 4.166 19 C 0.541 3.459 20 O -0.547 6.547 21 N -0.563 5.563 22 C 0.078 3.922 23 C 0.686 3.314 24 O -0.568 6.568 25 H 0.088 0.912 26 H 0.108 0.892 27 H 0.113 0.887 28 H 0.233 0.767 29 H 0.047 0.953 30 H 0.074 0.926 31 H 0.340 0.660 32 H 0.033 0.967 33 H 0.022 0.978 34 H 0.255 0.745 35 H 0.099 0.901 36 H 0.070 0.930 37 H 0.052 0.948 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.103 0.897 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.925 -5.604 -7.541 22.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.247 5.247 3 C 0.087 3.913 4 C -0.285 4.285 5 C 0.013 3.987 6 N -0.315 5.315 7 C -0.003 4.003 8 C 0.019 3.981 9 C -0.515 4.515 10 H 0.058 0.942 11 C -0.176 4.176 12 N -0.549 5.549 13 Si 0.762 3.238 14 H -0.213 1.213 15 H -0.210 1.210 16 H -0.195 1.195 17 C -0.219 4.219 18 C -0.204 4.204 19 C 0.339 3.661 20 O -0.423 6.423 21 N -0.306 5.306 22 C -0.063 4.063 23 C 0.389 3.611 24 O -0.445 6.445 25 H 0.107 0.893 26 H 0.127 0.873 27 H 0.131 0.869 28 H 0.249 0.751 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.159 0.841 32 H 0.051 0.949 33 H 0.040 0.960 34 H 0.063 0.937 35 H 0.117 0.883 36 H 0.089 0.911 37 H 0.071 0.929 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.121 0.879 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -19.944 -6.633 -7.613 22.354 hybrid contribution 1.021 -0.145 0.338 1.085 sum -18.923 -6.778 -7.275 21.376 Atomic orbital electron populations 1.22517 0.71935 1.06343 1.06400 1.44884 1.10903 1.03384 1.65503 1.22721 0.91365 0.90988 0.86218 1.20269 0.93816 0.94620 1.19844 1.20189 0.97426 0.90670 0.90459 1.60015 1.27291 1.34595 1.09630 1.21135 0.94795 0.87899 0.96426 1.18929 0.95870 0.91793 0.91477 1.20487 0.90686 1.09601 1.30710 0.94230 1.25495 0.99889 0.96502 0.95710 1.70073 1.14837 1.34263 1.35746 0.85985 0.78932 0.79414 0.79451 1.21257 1.21000 1.19529 1.22970 0.93825 1.06071 0.99032 1.22428 0.99373 0.95496 1.03079 1.17717 0.87761 0.84600 0.76065 1.90914 1.14909 1.87234 1.49259 1.46522 1.06580 1.10900 1.66645 1.21932 0.98082 0.82131 1.04145 1.16085 0.81333 0.85108 0.78526 1.90960 1.66295 1.30990 1.56221 0.89280 0.87335 0.86872 0.75108 0.93422 0.90858 0.84138 0.94861 0.95973 0.93652 0.88295 0.91118 0.92936 0.90567 0.90809 0.87871 0.89611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.43 10.59 127.77 1.35 1.78 16 2 N -0.53 -8.19 3.01 -680.37 -2.05 -10.24 16 3 C 0.21 3.01 10.07 83.17 0.84 3.84 16 4 C -0.28 -7.13 5.40 -19.78 -0.11 -7.24 16 5 C 0.14 4.26 5.57 85.56 0.48 4.74 16 6 N -0.68 -25.55 6.37 -517.91 -3.30 -28.85 16 7 C 0.13 5.47 5.51 86.31 0.48 5.94 16 8 C 0.02 0.97 1.55 -52.93 -0.08 0.89 16 9 C -0.48 -27.19 8.74 25.60 0.22 -26.96 16 10 H 0.04 2.33 7.82 -2.91 -0.02 2.31 16 11 C 0.02 1.33 5.39 84.65 0.46 1.79 16 12 N -0.91 -54.42 12.92 21.45 0.28 -54.14 16 13 Si 0.93 47.17 29.54 68.60 2.03 49.20 16 14 H -0.29 -14.81 7.11 99.48 0.71 -14.10 16 15 H -0.28 -14.00 7.11 99.48 0.71 -13.29 16 16 H -0.27 -13.06 7.11 99.48 0.71 -12.36 16 17 C -0.18 -7.31 9.96 30.62 0.30 -7.01 16 18 C -0.17 -7.61 9.41 30.62 0.29 -7.33 16 19 C 0.54 18.22 7.43 85.05 0.63 18.86 16 20 O -0.55 -24.14 15.96 -4.63 -0.07 -24.22 16 21 N -0.56 -16.04 2.96 -806.43 -2.39 -18.42 16 22 C 0.08 1.98 10.13 127.77 1.29 3.27 16 23 C 0.69 16.69 8.12 179.19 1.45 18.14 16 24 O -0.57 -15.63 15.10 -3.99 -0.06 -15.69 16 25 H 0.09 0.90 6.84 -2.38 -0.02 0.89 16 26 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 27 H 0.11 0.05 8.14 -2.39 -0.02 0.03 16 28 H 0.23 0.67 8.06 -2.91 -0.02 0.65 16 29 H 0.05 1.80 7.80 -2.39 -0.02 1.78 16 30 H 0.07 1.55 8.05 -2.39 -0.02 1.53 16 31 H 0.34 10.78 8.78 -89.70 -0.79 10.00 16 32 H 0.03 1.72 8.13 -2.39 -0.02 1.70 16 33 H 0.02 0.83 8.09 -2.38 -0.02 0.81 16 34 H 0.25 14.75 8.31 -92.71 -0.77 13.97 16 35 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 36 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 37 H 0.05 2.67 8.14 -2.39 -0.02 2.65 16 38 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 39 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.10 2.22 7.39 -2.38 -0.02 2.20 16 41 H 0.09 2.27 7.42 -2.39 -0.02 2.25 16 Total: -1.00 -81.71 348.73 2.30 -79.41 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 0.25 Total: 12.23 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: 7.61 Total: 10.72 kcal Atomic # 7 Polarization: -104.20 SS G_CDS: -7.46 Total: -111.66 kcal Atomic # 8 Polarization: -39.78 SS G_CDS: -0.13 Total: -39.91 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.20 kcal Total: -81.71 2.30 -79.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430032838.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.743 kcal (2) G-P(sol) polarization free energy of solvation -81.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds