Wall clock time and date at job start Tue Mar 31 2020 02:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.35758 * 119.62714 * 269.72688 * 3 2 1 5 5 C 1.35352 * 120.70194 * 179.76327 * 4 3 2 6 6 C 1.40198 * 119.94910 * 0.50916 * 5 4 3 7 7 C 1.36398 * 119.26068 * 359.75175 * 6 5 4 8 8 C 1.50699 * 120.34223 * 180.02562 * 7 6 5 9 9 N 1.46501 * 109.47393 * 94.97478 * 8 7 6 10 10 C 1.34772 * 120.00086 * 179.97438 * 9 8 7 11 11 O 1.21585 * 120.00484 * 0.02562 * 10 9 8 12 12 N 1.34782 * 119.99910 * 179.97438 * 10 9 8 13 13 C 1.46497 * 120.00092 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47541 * 180.02562 * 13 12 10 15 15 C 1.50694 * 109.47482 * 180.02562 * 14 13 12 16 16 H 1.07993 * 119.99914 * 359.97438 * 15 14 13 17 17 C 1.37882 * 120.00006 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99748 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99860 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47448 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47097 * 119.99425 * 19 17 15 22 22 H 1.48503 * 109.47211 * 239.99511 * 19 17 15 23 23 C 1.34664 * 119.62311 * 90.00106 * 3 2 1 24 24 O 1.22059 * 119.98433 * 0.02562 * 23 3 2 25 25 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 26 26 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 29 29 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 30 30 H 1.07997 * 119.64776 * 0.02562 * 4 3 2 31 31 H 1.08004 * 120.02773 * 180.28145 * 5 4 3 32 32 H 1.07998 * 120.36528 * 179.72425 * 6 5 4 33 33 H 1.09002 * 109.46840 * 214.97526 * 8 7 6 34 34 H 1.09005 * 109.47241 * 334.97573 * 8 7 6 35 35 H 0.97003 * 119.99459 * 0.02562 * 9 8 7 36 36 H 0.96996 * 120.00159 * 0.02562 * 12 10 9 37 37 H 1.08998 * 109.47042 * 300.00304 * 13 12 10 38 38 H 1.09007 * 109.47264 * 59.99880 * 13 12 10 39 39 H 1.09008 * 109.47057 * 300.00215 * 14 13 12 40 40 H 1.08997 * 109.46944 * 59.99658 * 14 13 12 41 41 H 0.97003 * 119.99510 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2472 2.0121 -1.1801 5 6 2.6939 3.2896 -1.2055 6 6 2.9347 3.9709 -0.0041 7 6 2.7090 3.3335 1.1806 8 6 2.9592 4.0429 2.4864 9 7 1.7083 4.6335 2.9689 10 6 1.6907 5.3211 4.1279 11 8 2.7130 5.4517 4.7729 12 7 0.5399 5.8648 4.5714 13 6 0.5209 6.6127 5.8310 14 6 -0.8971 7.1193 6.1020 15 6 -0.9166 7.8892 7.3973 16 1 -0.0085 8.0051 7.9702 17 6 -2.0940 8.4446 7.8516 18 7 -3.1999 8.3029 7.1541 19 14 -2.1182 9.3982 9.4575 20 1 -0.7548 9.4119 10.0458 21 1 -2.5601 10.7922 9.1989 22 1 -3.0591 8.7484 10.4050 23 6 2.2401 2.0088 1.1706 24 8 2.0348 1.4264 2.2235 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 2.0671 1.4905 -2.1084 31 1 2.8681 3.7825 -2.1506 32 1 3.2953 4.9888 -0.0165 33 1 3.3316 3.3297 3.2217 34 1 3.6984 4.8299 2.3366 35 1 0.8926 4.5289 2.4544 36 1 -0.2756 5.7609 4.0567 37 1 0.8352 5.9603 6.6457 38 1 1.2027 7.4603 5.7606 39 1 -1.2118 7.7716 5.2873 40 1 -1.5785 6.2715 6.1725 41 1 -4.0281 8.6939 7.4735 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000434388428.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:51 Heat of formation + Delta-G solvation = -41.691456 kcal Electronic energy + Delta-G solvation = -22554.253503 eV Core-core repulsion = 19048.437843 eV Total energy + Delta-G solvation = -3505.815660 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.76639 -39.36545 -37.21733 -36.34551 -34.77422 -33.95252 -32.74303 -31.35882 -30.38779 -29.31163 -26.55060 -25.08392 -24.42452 -22.64528 -22.24227 -20.93764 -20.40523 -18.20156 -17.85184 -17.51479 -16.51296 -16.36645 -16.14193 -15.45412 -15.11228 -14.87904 -14.51523 -14.45302 -14.20093 -13.76396 -13.49157 -13.30658 -13.24765 -12.83735 -12.58018 -12.34304 -12.22461 -12.10940 -11.88793 -11.62067 -11.10161 -10.99205 -10.55905 -10.45621 -10.23760 -10.14668 -9.80921 -9.47926 -9.17733 -8.84623 -8.41703 -8.27498 -8.11320 -6.03584 -4.05588 0.39441 1.55701 2.23696 3.06054 3.32790 3.39974 3.45498 3.54474 3.76110 4.09132 4.15616 4.45901 4.48505 4.57970 4.63193 4.69660 4.82888 4.86472 4.91687 5.15420 5.33593 5.35066 5.45062 5.57472 5.66898 5.72436 5.87355 6.08814 6.14920 6.40804 6.50403 6.71090 6.74547 6.87997 7.13614 7.38614 7.65932 7.71787 7.76049 7.96646 8.33894 8.57752 9.00235 9.14874 9.58788 11.08260 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.026334 B = 0.002525 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.017436 B =11088.318605 C =11502.524143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.086 3.914 3 N -0.498 5.498 4 C 0.136 3.864 5 C -0.234 4.234 6 C 0.003 3.997 7 C -0.229 4.229 8 C 0.206 3.794 9 N -0.746 5.746 10 C 0.700 3.300 11 O -0.599 6.599 12 N -0.739 5.739 13 C 0.141 3.859 14 C 0.012 3.988 15 C -0.518 4.518 16 H 0.060 0.940 17 C 0.057 3.943 18 N -0.895 5.895 19 Si 0.897 3.103 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.519 3.481 24 O -0.534 6.534 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.076 0.924 28 H 0.101 0.899 29 H 0.090 0.910 30 H 0.161 0.839 31 H 0.147 0.853 32 H 0.138 0.862 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.392 0.608 36 H 0.392 0.608 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.022 0.978 40 H 0.022 0.978 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.481 -15.702 -24.895 30.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.035 4.035 3 N -0.209 5.209 4 C 0.009 3.991 5 C -0.257 4.257 6 C -0.019 4.019 7 C -0.234 4.234 8 C 0.081 3.919 9 N -0.402 5.402 10 C 0.400 3.600 11 O -0.478 6.478 12 N -0.393 5.393 13 C 0.018 3.982 14 C -0.025 4.025 15 C -0.557 4.557 16 H 0.079 0.921 17 C -0.144 4.144 18 N -0.534 5.534 19 Si 0.724 3.276 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.210 1.210 23 C 0.320 3.680 24 O -0.415 6.415 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.095 0.905 28 H 0.119 0.881 29 H 0.109 0.891 30 H 0.178 0.822 31 H 0.164 0.836 32 H 0.156 0.844 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.225 0.775 36 H 0.225 0.775 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.040 0.960 40 H 0.040 0.960 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.106 -15.956 -23.531 30.174 hybrid contribution -0.973 0.433 0.087 1.069 sum 9.133 -15.523 -23.444 29.564 Atomic orbital electron populations 1.22121 0.93987 1.03370 1.03154 1.21984 0.96032 0.80540 1.04944 1.45656 1.53689 1.14823 1.06756 1.21981 0.93637 0.93986 0.89530 1.20673 1.10821 0.94704 0.99525 1.21492 0.89722 0.99456 0.91236 1.20840 1.10943 0.94819 0.96794 1.19532 0.86044 0.95810 0.90483 1.45116 1.11830 1.58965 1.24331 1.16032 0.84562 0.78672 0.80744 1.90877 1.32717 1.65896 1.58354 1.45507 1.09159 1.57855 1.26776 1.21567 1.00969 0.93710 0.81971 1.19330 0.89305 0.96460 0.97422 1.21110 0.95151 1.33326 1.06085 0.92148 1.25003 0.95539 0.96374 0.97487 1.69974 0.99563 1.45335 1.38578 0.86456 0.78203 0.79534 0.83372 1.19557 1.20983 1.20983 1.16923 0.80408 0.87811 0.82903 1.91009 1.53782 1.67432 1.29275 0.91400 0.92125 0.90504 0.88072 0.89149 0.82187 0.83568 0.84412 0.90531 0.90853 0.77537 0.77511 0.92841 0.92820 0.96002 0.95988 0.92985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.96 10.24 37.16 0.38 -0.58 16 2 C 0.09 0.50 6.05 -4.04 -0.02 0.48 16 3 N -0.50 -3.86 2.58 -119.77 -0.31 -4.17 16 4 C 0.14 0.63 10.28 -16.84 -0.17 0.46 16 5 C -0.23 -1.16 10.01 -39.87 -0.40 -1.56 16 6 C 0.00 0.03 9.73 -39.51 -0.38 -0.36 16 7 C -0.23 -2.47 5.27 -104.42 -0.55 -3.02 16 8 C 0.21 2.82 5.55 -5.19 -0.03 2.80 16 9 N -0.75 -11.29 5.55 -66.41 -0.37 -11.66 16 10 C 0.70 13.68 8.57 -86.92 -0.74 12.94 16 11 O -0.60 -14.03 16.34 5.29 0.09 -13.95 16 12 N -0.74 -14.37 5.56 -65.23 -0.36 -14.73 16 13 C 0.14 3.22 5.61 -4.04 -0.02 3.20 16 14 C 0.01 0.32 5.09 -27.89 -0.14 0.18 16 15 C -0.52 -14.84 9.11 -34.44 -0.31 -15.16 16 16 H 0.06 1.70 7.74 -52.49 -0.41 1.30 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.90 -26.76 13.29 55.43 0.74 -26.03 16 19 Si 0.90 21.91 29.54 -169.99 -5.02 16.88 16 20 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 C 0.52 6.16 7.40 -15.45 -0.11 6.05 16 24 O -0.53 -8.55 15.84 4.86 0.08 -8.47 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.10 0.77 7.39 -51.93 -0.38 0.39 16 29 H 0.09 0.22 8.01 -51.93 -0.42 -0.19 16 30 H 0.16 0.12 8.03 -52.49 -0.42 -0.30 16 31 H 0.15 0.34 8.06 -52.48 -0.42 -0.08 16 32 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 33 H 0.08 1.25 7.76 -51.93 -0.40 0.85 16 34 H 0.07 0.95 8.05 -51.93 -0.42 0.53 16 35 H 0.39 5.06 8.48 -40.82 -0.35 4.71 16 36 H 0.39 6.64 8.49 -40.82 -0.35 6.29 16 37 H 0.05 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.02 0.58 8.14 -51.92 -0.42 0.16 16 40 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 353.76 15.07 5.33 5.33 Total: -1.00 -37.48 353.76 -8.53 -46.01 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -6.08 Total: 3.82 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: -2.61 Total: 6.97 kcal Atomic # 7 Polarization: -56.28 SS G_CDS: -0.30 Total: -56.59 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: 0.16 Total: -22.42 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -37.48 -8.53 -46.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000434388428.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.314 kcal (2) G-P(sol) polarization free energy of solvation -37.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds