Wall clock time and date at job start Tue Mar 31 2020 02:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.35758 * 119.62714 * 269.72688 * 3 2 1 5 5 C 1.35352 * 120.70194 * 179.76327 * 4 3 2 6 6 C 1.40198 * 119.94910 * 0.50916 * 5 4 3 7 7 C 1.36398 * 119.26068 * 359.75175 * 6 5 4 8 8 C 1.50699 * 120.34223 * 180.02562 * 7 6 5 9 9 N 1.46501 * 109.47393 * 94.97478 * 8 7 6 10 10 C 1.34772 * 120.00086 * 179.97438 * 9 8 7 11 11 O 1.21585 * 120.00484 * 0.02562 * 10 9 8 12 12 N 1.34782 * 119.99910 * 179.97438 * 10 9 8 13 13 C 1.46497 * 120.00092 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47541 * 180.02562 * 13 12 10 15 15 C 1.50694 * 109.47482 * 180.02562 * 14 13 12 16 16 H 1.07993 * 119.99914 * 359.97438 * 15 14 13 17 17 C 1.37882 * 120.00006 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99748 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99860 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47448 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47097 * 119.99425 * 19 17 15 22 22 H 1.48503 * 109.47211 * 239.99511 * 19 17 15 23 23 C 1.34664 * 119.62311 * 90.00106 * 3 2 1 24 24 O 1.22059 * 119.98433 * 0.02562 * 23 3 2 25 25 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 26 26 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 29 29 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 30 30 H 1.07997 * 119.64776 * 0.02562 * 4 3 2 31 31 H 1.08004 * 120.02773 * 180.28145 * 5 4 3 32 32 H 1.07998 * 120.36528 * 179.72425 * 6 5 4 33 33 H 1.09002 * 109.46840 * 214.97526 * 8 7 6 34 34 H 1.09005 * 109.47241 * 334.97573 * 8 7 6 35 35 H 0.97003 * 119.99459 * 0.02562 * 9 8 7 36 36 H 0.96996 * 120.00159 * 0.02562 * 12 10 9 37 37 H 1.08998 * 109.47042 * 300.00304 * 13 12 10 38 38 H 1.09007 * 109.47264 * 59.99880 * 13 12 10 39 39 H 1.09008 * 109.47057 * 300.00215 * 14 13 12 40 40 H 1.08997 * 109.46944 * 59.99658 * 14 13 12 41 41 H 0.97003 * 119.99510 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2472 2.0121 -1.1801 5 6 2.6939 3.2896 -1.2055 6 6 2.9347 3.9709 -0.0041 7 6 2.7090 3.3335 1.1806 8 6 2.9592 4.0429 2.4864 9 7 1.7083 4.6335 2.9689 10 6 1.6907 5.3211 4.1279 11 8 2.7130 5.4517 4.7729 12 7 0.5399 5.8648 4.5714 13 6 0.5209 6.6127 5.8310 14 6 -0.8971 7.1193 6.1020 15 6 -0.9166 7.8892 7.3973 16 1 -0.0085 8.0051 7.9702 17 6 -2.0940 8.4446 7.8516 18 7 -3.1999 8.3029 7.1541 19 14 -2.1182 9.3982 9.4575 20 1 -0.7548 9.4119 10.0458 21 1 -2.5601 10.7922 9.1989 22 1 -3.0591 8.7484 10.4050 23 6 2.2401 2.0088 1.1706 24 8 2.0348 1.4264 2.2235 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 2.0671 1.4905 -2.1084 31 1 2.8681 3.7825 -2.1506 32 1 3.2953 4.9888 -0.0165 33 1 3.3316 3.3297 3.2217 34 1 3.6984 4.8299 2.3366 35 1 0.8926 4.5289 2.4544 36 1 -0.2756 5.7609 4.0567 37 1 0.8352 5.9603 6.6457 38 1 1.2027 7.4603 5.7606 39 1 -1.2118 7.7716 5.2873 40 1 -1.5785 6.2715 6.1725 41 1 -4.0281 8.6939 7.4735 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000434388428.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:49 Heat of formation + Delta-G solvation = -69.727403 kcal Electronic energy + Delta-G solvation = -22555.469233 eV Core-core repulsion = 19048.437843 eV Total energy + Delta-G solvation = -3507.031390 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -42.44782 -40.92916 -38.01446 -37.28408 -36.48457 -35.14255 -34.77154 -32.24252 -31.36875 -30.77313 -27.70263 -26.31653 -25.63835 -23.45626 -22.96374 -22.74369 -21.99770 -19.62048 -18.51768 -18.44817 -18.21116 -17.39605 -17.16274 -16.69874 -16.50557 -16.47319 -15.53275 -15.32910 -15.27168 -15.22675 -14.92974 -14.50897 -14.28242 -13.96810 -13.78383 -13.32855 -13.21295 -13.03506 -12.94971 -12.73516 -12.59567 -12.51132 -12.24597 -12.10752 -11.70416 -11.54158 -11.30355 -11.00637 -10.91160 -10.61552 -10.36564 -9.72784 -8.94385 -8.24327 -6.34700 -0.19360 0.94111 1.41182 1.41669 1.55499 1.65129 1.81335 2.15778 2.41317 2.67441 3.10250 3.44222 3.59916 3.69633 3.95108 4.04437 4.11871 4.16995 4.27338 4.41277 4.45703 4.51001 4.61146 4.65305 4.82192 4.85268 4.91105 5.07968 5.15754 5.19450 5.29957 5.39847 5.46595 5.51357 5.58243 5.67436 5.78242 6.00519 6.11175 6.16923 6.78322 7.01664 7.09725 7.34469 7.57441 8.88076 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.026334 B = 0.002525 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.017436 B =11088.318605 C =11502.524143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.082 3.918 3 N -0.495 5.495 4 C 0.153 3.847 5 C -0.236 4.236 6 C 0.033 3.967 7 C -0.275 4.275 8 C 0.211 3.789 9 N -0.726 5.726 10 C 0.697 3.303 11 O -0.641 6.641 12 N -0.734 5.734 13 C 0.160 3.840 14 C 0.025 3.975 15 C -0.546 4.546 16 H 0.059 0.941 17 C 0.006 3.994 18 N -0.927 5.927 19 Si 0.968 3.032 20 H -0.266 1.266 21 H -0.274 1.274 22 H -0.277 1.277 23 C 0.505 3.495 24 O -0.600 6.600 25 H 0.027 0.973 26 H 0.079 0.921 27 H 0.092 0.908 28 H 0.073 0.927 29 H 0.139 0.861 30 H 0.215 0.785 31 H 0.186 0.814 32 H 0.155 0.845 33 H 0.038 0.962 34 H 0.080 0.920 35 H 0.404 0.596 36 H 0.405 0.595 37 H 0.039 0.961 38 H 0.047 0.953 39 H 0.011 0.989 40 H 0.006 0.994 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.587 -15.718 -28.289 33.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.039 4.039 3 N -0.203 5.203 4 C 0.025 3.975 5 C -0.258 4.258 6 C 0.010 3.990 7 C -0.279 4.279 8 C 0.087 3.913 9 N -0.382 5.382 10 C 0.397 3.603 11 O -0.523 6.523 12 N -0.388 5.388 13 C 0.036 3.964 14 C -0.013 4.013 15 C -0.584 4.584 16 H 0.077 0.923 17 C -0.193 4.193 18 N -0.567 5.567 19 Si 0.792 3.208 20 H -0.190 1.190 21 H -0.200 1.200 22 H -0.202 1.202 23 C 0.309 3.691 24 O -0.487 6.487 25 H 0.047 0.953 26 H 0.098 0.902 27 H 0.110 0.890 28 H 0.092 0.908 29 H 0.156 0.844 30 H 0.231 0.769 31 H 0.204 0.796 32 H 0.173 0.827 33 H 0.057 0.943 34 H 0.098 0.902 35 H 0.239 0.761 36 H 0.240 0.760 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.029 0.971 40 H 0.024 0.976 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.195 -15.999 -27.025 33.019 hybrid contribution -1.000 0.367 0.907 1.399 sum 9.195 -15.633 -26.118 31.797 Atomic orbital electron populations 1.22091 0.93890 1.04104 1.02063 1.22199 0.96079 0.79649 1.05927 1.45737 1.52339 1.15503 1.06754 1.22934 0.90651 0.94112 0.89798 1.21158 1.09942 0.94836 0.99825 1.21822 0.86368 0.99988 0.90861 1.20426 1.16108 0.95062 0.96347 1.19463 0.85164 0.95202 0.91488 1.45068 1.13238 1.57203 1.22715 1.16178 0.83726 0.78818 0.81548 1.90841 1.34094 1.67491 1.59863 1.45222 1.09984 1.57679 1.25944 1.21092 0.98813 0.93391 0.83098 1.19126 0.90461 0.95352 0.96346 1.21488 0.95489 1.34195 1.07251 0.92301 1.25899 0.95015 0.97197 1.01163 1.70073 1.00211 1.46064 1.40333 0.85354 0.78440 0.78219 0.78771 1.19013 1.19958 1.20221 1.17130 0.80417 0.88224 0.83368 1.90964 1.57207 1.68843 1.31647 0.95330 0.90177 0.88968 0.90841 0.84361 0.76862 0.79650 0.82711 0.94307 0.90187 0.76095 0.75963 0.94248 0.93480 0.97074 0.97595 0.92511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 10.24 71.98 0.74 -0.91 16 2 C 0.08 0.81 6.05 86.38 0.52 1.33 16 3 N -0.49 -6.71 2.58 -650.98 -1.68 -8.40 16 4 C 0.15 0.67 10.28 83.42 0.86 1.53 16 5 C -0.24 -1.18 10.01 22.08 0.22 -0.96 16 6 C 0.03 0.40 9.73 22.32 0.22 0.61 16 7 C -0.27 -5.96 5.27 -19.73 -0.10 -6.06 16 8 C 0.21 6.15 5.55 85.63 0.47 6.62 16 9 N -0.73 -22.92 5.55 -482.29 -2.68 -25.59 16 10 C 0.70 28.33 8.57 179.05 1.53 29.86 16 11 O -0.64 -31.34 16.34 -3.98 -0.07 -31.41 16 12 N -0.73 -29.40 5.56 -478.54 -2.66 -32.06 16 13 C 0.16 7.60 5.61 86.38 0.48 8.08 16 14 C 0.02 1.32 5.09 29.85 0.15 1.47 16 15 C -0.55 -31.79 9.11 25.60 0.23 -31.56 16 16 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 17 C 0.01 0.34 5.46 84.66 0.46 0.80 16 18 N -0.93 -55.77 13.29 21.45 0.28 -55.48 16 19 Si 0.97 44.95 29.54 68.60 2.03 46.98 16 20 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 21 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 22 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 23 C 0.50 12.37 7.40 84.82 0.63 12.99 16 24 O -0.60 -21.06 15.84 -5.51 -0.09 -21.15 16 25 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 26 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.07 1.18 7.39 -2.39 -0.02 1.16 16 29 H 0.14 0.05 8.01 -2.39 -0.02 0.03 16 30 H 0.21 -1.30 8.03 -2.91 -0.02 -1.32 16 31 H 0.19 -0.40 8.06 -2.91 -0.02 -0.42 16 32 H 0.16 1.33 8.06 -2.91 -0.02 1.30 16 33 H 0.04 1.41 7.76 -2.39 -0.02 1.39 16 34 H 0.08 2.15 8.05 -2.38 -0.02 2.13 16 35 H 0.40 10.70 8.48 -92.71 -0.79 9.91 16 36 H 0.41 14.02 8.49 -92.71 -0.79 13.24 16 37 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.05 2.29 8.14 -2.38 -0.02 2.27 16 39 H 0.01 0.60 8.14 -2.38 -0.02 0.58 16 40 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 41 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -87.37 353.76 1.03 -86.34 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -0.53 Total: 16.96 kcal Atomic # 6 Polarization: 17.39 SS G_CDS: 6.42 Total: 23.81 kcal Atomic # 7 Polarization: -114.80 SS G_CDS: -6.74 Total: -121.53 kcal Atomic # 8 Polarization: -52.40 SS G_CDS: -0.15 Total: -52.55 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -87.37 1.03 -86.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000434388428.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.616 kcal (2) G-P(sol) polarization free energy of solvation -87.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds