Wall clock time and date at job start Tue Mar 31 2020 03:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42900 * 109.47378 * 2 1 4 4 C 1.42905 * 114.00550 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47187 * 179.97438 * 4 3 2 6 6 C 1.50697 * 115.55275 * 325.58759 * 5 4 3 7 7 O 1.21595 * 119.99893 * 214.32618 * 6 5 4 8 8 N 1.32905 * 120.00426 * 34.32532 * 6 5 4 9 9 C 1.33308 * 120.00407 * 179.97438 * 8 6 5 10 10 C 1.40984 * 126.35622 * 0.02562 * 9 8 6 11 11 C 1.35123 * 108.24004 * 179.73015 * 10 9 8 12 12 N 1.36334 * 108.89850 * 0.43029 * 11 10 9 13 13 C 1.46499 * 125.86567 * 179.83029 * 12 11 10 14 14 C 1.50701 * 109.46992 * 274.69085 * 13 12 11 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47294 * 60.00559 * 18 16 14 20 20 H 1.48503 * 109.46954 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47431 * 300.00157 * 18 16 14 22 22 N 1.37280 * 126.35635 * 179.97438 * 9 8 6 23 23 H 0.96993 * 126.35333 * 359.97438 * 22 9 8 24 24 C 1.53007 * 117.51304 * 111.28421 * 5 4 3 25 25 C 1.53001 * 117.49610 * 179.91074 * 5 4 3 26 26 H 1.09001 * 109.47106 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47176 * 300.00307 * 1 2 3 28 28 H 1.09001 * 109.47045 * 60.00303 * 1 2 3 29 29 H 1.08998 * 109.47498 * 240.00117 * 2 1 3 30 30 H 1.09001 * 109.47045 * 119.99697 * 2 1 3 31 31 H 1.08996 * 109.46547 * 59.99877 * 4 3 2 32 32 H 1.08996 * 109.46701 * 299.99704 * 4 3 2 33 33 H 1.08003 * 125.87721 * 359.97172 * 10 9 8 34 34 H 1.07995 * 125.55025 * 180.25708 * 11 10 9 35 35 H 1.09002 * 109.47391 * 154.69075 * 13 12 11 36 36 H 1.09001 * 109.46813 * 34.69132 * 13 12 11 37 37 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 38 38 H 1.09001 * 117.49679 * 214.96928 * 24 5 4 39 39 H 1.09002 * 117.50018 * 359.97438 * 24 5 4 40 40 H 1.08995 * 117.50190 * 359.97438 * 25 5 4 41 41 H 1.09001 * 117.49388 * 144.98327 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4602 0.0006 5 6 3.8254 2.9384 -0.0001 6 6 2.9096 3.8552 -0.7694 7 8 3.3658 4.8166 -1.3577 8 7 1.6033 3.6129 -0.8050 9 6 0.7932 4.4241 -1.4852 10 6 1.1755 5.5705 -2.2114 11 6 0.0663 6.1126 -2.7606 12 7 -1.0146 5.3616 -2.4054 13 6 -2.4034 5.6181 -2.7948 14 6 -3.0217 6.5996 -1.8329 15 1 -2.4384 6.9933 -1.0136 16 6 -4.3318 6.9959 -1.9993 17 7 -5.0419 6.5169 -2.9972 18 14 -5.0980 8.2131 -0.8073 19 1 -4.3319 9.4849 -0.8379 20 1 -6.5058 8.4730 -1.2020 21 1 -5.0656 7.6485 0.5658 22 7 -0.5682 4.2978 -1.6092 23 1 -1.1190 3.6016 -1.2186 24 6 4.4830 3.4951 1.2643 25 6 5.3188 3.2710 0.0025 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8340 0.9765 -0.8891 32 1 3.8333 0.9768 0.8908 33 1 2.1822 5.9479 -2.3144 34 1 0.0400 6.9984 -3.3778 35 1 -2.9654 4.6844 -2.7726 36 1 -2.4274 6.0328 -3.8026 37 1 -5.9637 6.7954 -3.1140 38 1 4.2533 4.5244 1.5396 39 1 4.6343 2.8082 2.0971 40 1 6.0203 2.4368 0.0051 41 1 5.6389 4.1528 -0.5526 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000440611808.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:01 Heat of formation + Delta-G solvation = 54.077982 kcal Electronic energy + Delta-G solvation = -23422.617905 eV Core-core repulsion = 19920.955120 eV Total energy + Delta-G solvation = -3501.662785 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.77081 -39.22672 -37.41406 -35.97074 -34.12308 -32.84624 -31.17595 -30.95776 -30.54226 -27.14732 -26.41431 -23.94115 -22.65274 -22.45607 -22.27536 -21.24914 -20.67713 -18.24629 -17.08213 -16.75379 -16.38617 -15.86336 -15.72066 -15.04881 -14.88295 -14.67147 -14.49746 -14.07855 -13.51798 -13.39398 -13.08800 -13.01725 -12.70616 -12.46316 -12.31174 -12.00250 -11.76670 -11.45992 -11.35020 -11.25005 -11.03650 -10.87836 -10.53111 -10.37895 -10.35069 -9.91597 -9.52775 -9.24131 -8.98807 -8.93687 -8.89847 -8.11782 -6.86172 -6.47370 -4.64750 1.71243 2.14168 2.99768 3.08390 3.13782 3.17509 3.68326 4.06159 4.07145 4.27375 4.61012 4.77087 4.83113 4.99911 5.16620 5.20516 5.27446 5.29551 5.38290 5.50656 5.56753 5.72128 5.73547 5.82042 5.86775 5.93772 6.04530 6.07940 6.08524 6.28667 6.30028 6.53757 6.56965 6.66166 6.80770 7.39037 7.51284 7.54572 7.61734 7.71737 8.05350 8.41516 8.47017 9.05805 9.56552 10.53501 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.018604 B = 0.003712 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.700971 B = 7540.865762 C = 8291.739791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.052 3.948 3 O -0.328 6.328 4 C 0.111 3.889 5 C -0.125 4.125 6 C 0.531 3.469 7 O -0.594 6.594 8 N -0.654 5.654 9 C 0.465 3.535 10 C -0.335 4.335 11 C 0.160 3.840 12 N -0.342 5.342 13 C 0.254 3.746 14 C -0.558 4.558 15 H 0.069 0.931 16 C 0.071 3.929 17 N -0.887 5.887 18 Si 0.910 3.090 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.273 1.273 22 N -0.465 5.465 23 H 0.444 0.556 24 C -0.153 4.153 25 C -0.151 4.151 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.037 0.963 30 H 0.036 0.964 31 H 0.043 0.957 32 H 0.042 0.958 33 H 0.182 0.818 34 H 0.186 0.814 35 H 0.051 0.949 36 H 0.068 0.932 37 H 0.272 0.728 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.069 -8.843 3.386 14.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.025 4.025 3 O -0.246 6.246 4 C 0.033 3.967 5 C -0.128 4.128 6 C 0.316 3.684 7 O -0.477 6.477 8 N -0.416 5.416 9 C 0.215 3.785 10 C -0.368 4.368 11 C 0.014 3.986 12 N -0.127 5.127 13 C 0.138 3.862 14 C -0.596 4.596 15 H 0.087 0.913 16 C -0.135 4.135 17 N -0.524 5.524 18 Si 0.736 3.264 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.198 1.198 22 N -0.187 5.187 23 H 0.291 0.709 24 C -0.190 4.190 25 C -0.188 4.188 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.199 0.801 34 H 0.203 0.797 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 10.328 -8.918 3.378 14.057 hybrid contribution -0.469 0.513 0.495 0.853 sum 9.859 -8.405 3.873 13.522 Atomic orbital electron populations 1.21634 0.94016 1.01175 1.03308 1.22386 0.95748 0.85695 0.98697 1.88467 1.18430 1.22829 1.94856 1.21673 0.83553 0.92651 0.98802 1.21061 0.94180 0.95063 1.02513 1.19473 0.86225 0.82977 0.79705 1.90518 1.80209 1.31157 1.45829 1.68928 1.04350 1.33826 1.34453 1.19385 0.82549 0.89267 0.87250 1.22507 1.00834 1.01985 1.11459 1.22849 0.85503 0.94675 0.95569 1.47997 1.09133 1.15934 1.39634 1.20045 0.70127 0.98591 0.97416 1.21377 0.97631 1.27056 1.13582 0.91260 1.24947 0.96458 0.96332 0.95714 1.69888 1.10068 1.43008 1.29418 0.86346 0.78172 0.81043 0.80822 1.19665 1.20800 1.19834 1.44537 1.06012 1.21785 1.46416 0.70859 1.22999 1.02630 1.02391 0.90979 1.22979 0.91185 1.03713 1.00927 0.92058 0.91925 0.91886 0.94499 0.94605 0.93865 0.93960 0.80147 0.79676 0.93092 0.91444 0.91793 0.88594 0.88486 0.88643 0.87396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 10.28 37.16 0.38 -1.29 16 2 C 0.05 0.64 6.66 37.16 0.25 0.89 16 3 O -0.33 -5.22 7.89 -35.23 -0.28 -5.50 16 4 C 0.11 1.56 6.06 37.16 0.23 1.78 16 5 C -0.13 -1.99 2.53 -155.66 -0.39 -2.38 16 6 C 0.53 10.69 7.27 -11.82 -0.09 10.61 16 7 O -0.59 -13.00 13.16 5.28 0.07 -12.93 16 8 N -0.65 -13.34 8.13 -11.59 -0.09 -13.44 16 9 C 0.47 9.31 8.07 -155.19 -1.25 8.05 16 10 C -0.34 -6.43 9.51 -39.65 -0.38 -6.80 16 11 C 0.16 2.77 11.46 -16.66 -0.19 2.57 16 12 N -0.34 -6.46 3.63 -62.23 -0.23 -6.68 16 13 C 0.25 5.36 6.19 -5.19 -0.03 5.32 16 14 C -0.56 -13.39 9.39 -34.44 -0.32 -13.71 16 15 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 16 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 17 N -0.89 -22.62 13.29 55.43 0.74 -21.89 16 18 Si 0.91 19.38 29.54 -169.99 -5.02 14.36 16 19 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 20 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 21 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 22 N -0.47 -8.57 7.37 31.32 0.23 -8.34 16 23 H 0.44 7.37 8.96 -182.55 -1.64 5.73 16 24 C -0.15 -2.04 9.88 -26.73 -0.26 -2.30 16 25 C -0.15 -1.96 9.76 -26.73 -0.26 -2.22 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.04 0.50 7.90 -51.93 -0.41 0.09 16 33 H 0.18 3.62 5.77 -52.48 -0.30 3.32 16 34 H 0.19 2.54 8.06 -52.49 -0.42 2.12 16 35 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 38 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.10 1.06 8.05 -51.93 -0.42 0.64 16 40 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.11 1.54 7.67 -51.93 -0.40 1.14 16 LS Contribution 350.81 15.07 5.29 5.29 Total: -1.00 -29.48 350.81 -9.08 -38.56 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -7.36 Total: 8.42 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: -2.42 Total: 2.15 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: 0.65 Total: -50.35 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: -0.21 Total: -18.42 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.36 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.48 -9.08 -38.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440611808.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.638 kcal (2) G-P(sol) polarization free energy of solvation -29.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds