Wall clock time and date at job start Tue Mar 31 2020 02:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42900 * 109.47378 * 2 1 4 4 C 1.42905 * 114.00550 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47187 * 179.97438 * 4 3 2 6 6 C 1.50697 * 115.55275 * 325.58759 * 5 4 3 7 7 O 1.21595 * 119.99893 * 214.32618 * 6 5 4 8 8 N 1.32905 * 120.00426 * 34.32532 * 6 5 4 9 9 C 1.33308 * 120.00407 * 179.97438 * 8 6 5 10 10 C 1.40984 * 126.35622 * 0.02562 * 9 8 6 11 11 C 1.35123 * 108.24004 * 179.73015 * 10 9 8 12 12 N 1.36334 * 108.89850 * 0.43029 * 11 10 9 13 13 C 1.46499 * 125.86567 * 179.83029 * 12 11 10 14 14 C 1.50701 * 109.46992 * 274.69085 * 13 12 11 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47294 * 60.00559 * 18 16 14 20 20 H 1.48503 * 109.46954 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47431 * 300.00157 * 18 16 14 22 22 N 1.37280 * 126.35635 * 179.97438 * 9 8 6 23 23 H 0.96993 * 126.35333 * 359.97438 * 22 9 8 24 24 C 1.53007 * 117.51304 * 111.28421 * 5 4 3 25 25 C 1.53001 * 117.49610 * 179.91074 * 5 4 3 26 26 H 1.09001 * 109.47106 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47176 * 300.00307 * 1 2 3 28 28 H 1.09001 * 109.47045 * 60.00303 * 1 2 3 29 29 H 1.08998 * 109.47498 * 240.00117 * 2 1 3 30 30 H 1.09001 * 109.47045 * 119.99697 * 2 1 3 31 31 H 1.08996 * 109.46547 * 59.99877 * 4 3 2 32 32 H 1.08996 * 109.46701 * 299.99704 * 4 3 2 33 33 H 1.08003 * 125.87721 * 359.97172 * 10 9 8 34 34 H 1.07995 * 125.55025 * 180.25708 * 11 10 9 35 35 H 1.09002 * 109.47391 * 154.69075 * 13 12 11 36 36 H 1.09001 * 109.46813 * 34.69132 * 13 12 11 37 37 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 38 38 H 1.09001 * 117.49679 * 214.96928 * 24 5 4 39 39 H 1.09002 * 117.50018 * 359.97438 * 24 5 4 40 40 H 1.08995 * 117.50190 * 359.97438 * 25 5 4 41 41 H 1.09001 * 117.49388 * 144.98327 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4602 0.0006 5 6 3.8254 2.9384 -0.0001 6 6 2.9096 3.8552 -0.7694 7 8 3.3658 4.8166 -1.3577 8 7 1.6033 3.6129 -0.8050 9 6 0.7932 4.4241 -1.4852 10 6 1.1755 5.5705 -2.2114 11 6 0.0663 6.1126 -2.7606 12 7 -1.0146 5.3616 -2.4054 13 6 -2.4034 5.6181 -2.7948 14 6 -3.0217 6.5996 -1.8329 15 1 -2.4384 6.9933 -1.0136 16 6 -4.3318 6.9959 -1.9993 17 7 -5.0419 6.5169 -2.9972 18 14 -5.0980 8.2131 -0.8073 19 1 -4.3319 9.4849 -0.8379 20 1 -6.5058 8.4730 -1.2020 21 1 -5.0656 7.6485 0.5658 22 7 -0.5682 4.2978 -1.6092 23 1 -1.1190 3.6016 -1.2186 24 6 4.4830 3.4951 1.2643 25 6 5.3188 3.2710 0.0025 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8340 0.9765 -0.8891 32 1 3.8333 0.9768 0.8908 33 1 2.1822 5.9479 -2.3144 34 1 0.0400 6.9984 -3.3778 35 1 -2.9654 4.6844 -2.7726 36 1 -2.4274 6.0328 -3.8026 37 1 -5.9637 6.7954 -3.1140 38 1 4.2533 4.5244 1.5396 39 1 4.6343 2.8082 2.0971 40 1 6.0203 2.4368 0.0051 41 1 5.6389 4.1528 -0.5526 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000440611808.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:59 Heat of formation + Delta-G solvation = 36.852865 kcal Electronic energy + Delta-G solvation = -23423.364842 eV Core-core repulsion = 19920.955120 eV Total energy + Delta-G solvation = -3502.409722 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.28262 -40.54406 -38.60642 -37.15816 -35.83786 -34.51805 -32.50400 -32.34296 -31.93721 -28.69134 -27.66292 -25.49010 -24.16871 -23.47368 -23.28803 -22.70979 -22.12142 -19.61481 -18.85458 -18.29218 -17.57691 -17.16135 -16.85849 -16.67375 -16.30949 -16.07415 -15.84940 -15.50606 -14.88061 -14.68873 -14.32963 -14.30977 -14.17917 -14.07354 -13.68085 -13.22593 -13.09360 -12.91367 -12.72714 -12.45992 -12.31529 -12.24538 -12.06368 -11.89480 -11.40327 -11.18386 -11.00412 -10.78226 -10.56513 -10.45783 -10.12444 -9.67435 -8.55274 -8.21902 -6.56587 0.21093 0.62465 1.39491 1.41752 1.48712 1.54015 2.30492 2.54531 2.79150 2.94860 2.99488 3.26850 3.50429 3.92034 3.94137 4.11655 4.15144 4.28081 4.34952 4.43138 4.51422 4.59904 4.61101 4.68784 4.74032 4.81081 4.84660 4.93942 4.95761 4.99563 5.14322 5.24014 5.27411 5.29709 5.36221 5.50960 5.69955 6.01614 6.17461 6.45226 6.63437 6.65622 6.94510 7.17217 8.04107 8.65977 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.018604 B = 0.003712 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.700971 B = 7540.865762 C = 8291.739791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.048 3.952 3 O -0.362 6.362 4 C 0.112 3.888 5 C -0.154 4.154 6 C 0.513 3.487 7 O -0.624 6.624 8 N -0.662 5.662 9 C 0.448 3.552 10 C -0.349 4.349 11 C 0.176 3.824 12 N -0.346 5.346 13 C 0.268 3.732 14 C -0.567 4.567 15 H 0.059 0.941 16 C 0.032 3.968 17 N -0.913 5.913 18 Si 0.963 3.037 19 H -0.268 1.268 20 H -0.278 1.278 21 H -0.276 1.276 22 N -0.462 5.462 23 H 0.450 0.550 24 C -0.142 4.142 25 C -0.134 4.134 26 H 0.086 0.914 27 H 0.052 0.948 28 H 0.044 0.956 29 H 0.043 0.957 30 H 0.056 0.944 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.172 0.828 34 H 0.223 0.777 35 H 0.043 0.957 36 H 0.072 0.928 37 H 0.274 0.726 38 H 0.078 0.922 39 H 0.128 0.872 40 H 0.131 0.869 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.687 -9.500 4.197 15.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.029 4.029 3 O -0.280 6.280 4 C 0.035 3.965 5 C -0.157 4.157 6 C 0.300 3.700 7 O -0.509 6.509 8 N -0.423 5.423 9 C 0.198 3.802 10 C -0.381 4.381 11 C 0.030 3.970 12 N -0.131 5.131 13 C 0.151 3.849 14 C -0.606 4.606 15 H 0.077 0.923 16 C -0.171 4.171 17 N -0.550 5.550 18 Si 0.788 3.212 19 H -0.193 1.193 20 H -0.203 1.203 21 H -0.201 1.201 22 N -0.185 5.185 23 H 0.298 0.702 24 C -0.179 4.179 25 C -0.171 4.171 26 H 0.105 0.895 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.089 0.911 33 H 0.189 0.811 34 H 0.240 0.760 35 H 0.061 0.939 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.097 0.903 39 H 0.146 0.854 40 H 0.149 0.851 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 10.951 -9.592 4.196 15.151 hybrid contribution -0.640 0.708 0.236 0.983 sum 10.311 -8.884 4.432 14.314 Atomic orbital electron populations 1.21645 0.93963 1.02391 1.01909 1.22547 0.95857 0.84581 0.99936 1.88417 1.19588 1.24896 1.95139 1.21753 0.82954 0.91450 1.00321 1.21181 0.94976 0.95540 1.04046 1.20309 0.86625 0.83342 0.79703 1.90487 1.80613 1.32618 1.47230 1.69067 1.04741 1.33956 1.34542 1.19678 0.83034 0.89824 0.87664 1.22424 1.00980 1.02339 1.12373 1.23383 0.84156 0.94830 0.94583 1.47872 1.08913 1.16384 1.39914 1.19743 0.70757 0.97519 0.96923 1.21572 0.97855 1.27440 1.13689 0.92317 1.25587 0.96915 0.97671 0.96922 1.69952 1.10378 1.44086 1.30624 0.85516 0.77593 0.79285 0.78815 1.19294 1.20336 1.20136 1.44517 1.05694 1.21876 1.46411 0.70187 1.23098 1.01380 1.02043 0.91410 1.23057 0.90079 1.04071 0.99879 0.89533 0.92840 0.93698 0.93827 0.92592 0.93442 0.91077 0.81115 0.76034 0.93904 0.91056 0.91651 0.90302 0.85355 0.85054 0.89213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 10.28 71.98 0.74 -2.45 16 2 C 0.05 1.11 6.66 71.98 0.48 1.59 16 3 O -0.36 -11.20 7.89 -148.98 -1.17 -12.38 16 4 C 0.11 2.95 6.06 71.98 0.44 3.39 16 5 C -0.15 -4.76 2.53 -52.93 -0.13 -4.90 16 6 C 0.51 20.98 7.27 87.95 0.64 21.62 16 7 O -0.62 -28.08 13.16 -4.01 -0.05 -28.13 16 8 N -0.66 -27.47 8.13 -309.88 -2.52 -29.99 16 9 C 0.45 18.20 8.07 133.83 1.08 19.28 16 10 C -0.35 -13.50 9.51 22.23 0.21 -13.28 16 11 C 0.18 5.93 11.46 83.28 0.95 6.89 16 12 N -0.35 -12.92 3.63 -350.81 -1.27 -14.19 16 13 C 0.27 11.14 6.19 85.63 0.53 11.67 16 14 C -0.57 -26.88 9.39 25.60 0.24 -26.64 16 15 H 0.06 2.87 7.81 -2.91 -0.02 2.85 16 16 C 0.03 1.52 5.46 84.66 0.46 1.98 16 17 N -0.91 -46.06 13.29 21.45 0.28 -45.77 16 18 Si 0.96 39.10 29.54 68.60 2.03 41.12 16 19 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 20 H -0.28 -11.03 7.11 99.48 0.71 -10.32 16 21 H -0.28 -11.26 7.11 99.48 0.71 -10.55 16 22 N -0.46 -17.17 7.37 -54.81 -0.40 -17.57 16 23 H 0.45 15.19 8.96 -213.29 -1.91 13.28 16 24 C -0.14 -3.55 9.88 30.60 0.30 -3.25 16 25 C -0.13 -3.25 9.76 30.60 0.30 -2.95 16 26 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.05 1.27 8.14 -2.39 -0.02 1.26 16 28 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.07 1.43 7.90 -2.39 -0.02 1.41 16 33 H 0.17 7.04 5.77 -2.91 -0.02 7.02 16 34 H 0.22 5.62 8.06 -2.91 -0.02 5.59 16 35 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 37 H 0.27 13.19 8.31 -92.71 -0.77 12.42 16 38 H 0.08 2.22 8.14 -2.39 -0.02 2.21 16 39 H 0.13 2.37 8.05 -2.39 -0.02 2.35 16 40 H 0.13 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.09 2.52 7.67 -2.39 -0.02 2.50 16 Total: -1.00 -63.52 350.81 2.25 -61.27 By element: Atomic # 1 Polarization: 33.58 SS G_CDS: -0.88 Total: 32.71 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: 6.24 Total: 12.94 kcal Atomic # 7 Polarization: -103.61 SS G_CDS: -3.91 Total: -107.52 kcal Atomic # 8 Polarization: -39.29 SS G_CDS: -1.23 Total: -40.51 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 2.03 Total: 41.12 kcal Total: -63.52 2.25 -61.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440611808.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.124 kcal (2) G-P(sol) polarization free energy of solvation -63.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds