Wall clock time and date at job start Tue Mar 31 2020 03:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47127 * 2 1 4 4 H 1.09000 * 109.47575 * 304.89387 * 3 2 1 5 5 C 1.50706 * 109.47241 * 184.89984 * 3 2 1 6 6 H 1.08001 * 119.99776 * 245.45219 * 5 3 2 7 7 C 1.37870 * 120.00287 * 65.44704 * 5 3 2 8 8 N 1.31520 * 119.99758 * 9.47239 * 7 5 3 9 9 Si 1.86796 * 120.00408 * 189.47192 * 7 5 3 10 10 H 1.48503 * 109.47348 * 84.99199 * 9 7 5 11 11 H 1.48494 * 109.47573 * 204.99694 * 9 7 5 12 12 H 1.48504 * 109.47217 * 324.99696 * 9 7 5 13 13 N 1.46499 * 109.47611 * 64.89601 * 3 2 1 14 14 C 1.34772 * 119.99943 * 275.00454 * 13 3 2 15 15 O 1.21821 * 120.00156 * 359.97438 * 14 13 3 16 16 N 1.33924 * 119.99852 * 179.97438 * 14 13 3 17 17 C 1.32759 * 119.99890 * 179.97438 * 16 14 13 18 18 N 1.34454 * 126.09626 * 359.97438 * 17 16 14 19 19 C 1.30378 * 110.14509 * 180.02562 * 18 17 16 20 20 N 1.35530 * 109.16460 * 0.02562 * 19 18 17 21 21 N 1.37461 * 126.09424 * 179.97438 * 17 16 14 22 22 H 0.97002 * 127.11186 * 359.87334 * 21 17 16 23 23 C 1.46392 * 125.05474 * 179.89566 * 20 19 18 24 24 C 1.53271 * 108.77722 * 343.04532 * 23 20 19 25 25 C 1.53147 * 109.46165 * 50.22920 * 24 23 20 26 26 C 1.51167 * 127.13037 * 180.13134 * 19 18 17 27 27 H 1.09003 * 109.47162 * 179.97438 * 1 2 3 28 28 H 1.08989 * 109.47219 * 300.00517 * 1 2 3 29 29 H 1.09007 * 109.46550 * 60.00715 * 1 2 3 30 30 H 1.08995 * 109.47624 * 239.99400 * 2 1 3 31 31 H 1.09010 * 109.47019 * 119.99485 * 2 1 3 32 32 H 0.97005 * 119.99646 * 179.97438 * 8 7 5 33 33 H 0.97007 * 120.00008 * 94.99703 * 13 3 2 34 34 H 1.08995 * 109.58618 * 223.25104 * 23 20 19 35 35 H 1.09004 * 109.58531 * 102.83312 * 23 20 19 36 36 H 1.09004 * 109.47557 * 290.22935 * 24 23 20 37 37 H 1.09002 * 109.47121 * 170.22792 * 24 23 20 38 38 H 1.08998 * 109.50126 * 170.54382 * 25 24 23 39 39 H 1.09006 * 109.49671 * 50.43417 * 25 24 23 40 40 H 1.09000 * 109.70951 * 44.15801 * 26 19 18 41 41 H 1.09006 * 109.70970 * 283.56575 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6069 1.9810 -0.8429 5 6 3.5421 1.4442 -0.1214 6 1 4.1493 1.8090 0.6939 7 6 4.1413 0.9800 -1.2730 8 7 3.4098 0.7113 -2.3325 9 14 5.9920 0.7327 -1.3288 10 1 6.3291 -0.6067 -0.7832 11 1 6.4620 0.8273 -2.7342 12 1 6.6563 1.7808 -0.5130 13 7 1.6503 2.0983 1.2507 14 6 0.4329 2.6652 1.3634 15 8 -0.3434 2.6327 0.4252 16 7 0.0765 3.2643 2.5070 17 6 -1.1226 3.8232 2.6178 18 7 -2.0706 3.8600 1.6651 19 6 -3.1259 4.4861 2.1056 20 7 -2.9046 4.8884 3.3807 21 7 -1.6163 4.4675 3.7272 22 1 -1.1651 4.6016 4.5753 23 6 -3.8614 5.6255 4.2079 24 6 -4.9392 6.2265 3.2988 25 6 -5.4909 5.1382 2.3732 26 6 -4.4128 4.7447 1.3558 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8898 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.8314 0.3851 -3.1429 33 1 2.2686 2.1244 1.9978 34 1 -3.3451 6.4244 4.7400 35 1 -4.3244 4.9465 4.9241 36 1 -4.5046 7.0269 2.7000 37 1 -5.7476 6.6279 3.9100 38 1 -6.3667 5.5178 1.8470 39 1 -5.7704 4.2656 2.9638 40 1 -4.7182 3.8416 0.8273 41 1 -4.2662 5.5561 0.6428 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456003102.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:10 Heat of formation + Delta-G solvation = 91.501679 kcal Electronic energy + Delta-G solvation = -23645.286504 eV Core-core repulsion = 20177.539284 eV Total energy + Delta-G solvation = -3467.747221 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.27295 -38.60801 -37.26372 -34.90232 -33.94780 -32.76614 -31.91726 -30.83405 -30.45429 -29.18111 -26.62593 -24.98359 -23.25254 -22.94498 -22.12854 -20.04617 -19.82444 -18.81825 -18.24251 -17.17588 -16.62046 -15.83310 -15.38806 -15.14471 -14.89108 -14.77174 -14.50929 -14.33863 -14.02044 -13.91297 -13.11296 -12.72401 -12.43935 -11.87010 -11.78530 -11.74990 -11.64627 -11.21163 -11.11291 -10.81328 -10.59619 -10.36145 -10.29871 -10.28535 -10.12071 -9.91202 -9.81598 -9.35533 -8.81180 -8.26374 -8.08049 -7.63893 -7.16890 -5.92016 -3.95123 1.09629 1.14733 3.07009 3.39830 3.43918 3.45410 3.48745 3.71837 4.00511 4.07429 4.09396 4.47718 4.56417 4.69026 4.76269 4.82118 5.06081 5.06601 5.13037 5.19915 5.30531 5.40548 5.46118 5.55991 5.84107 6.05433 6.61239 6.62990 6.72077 6.92007 7.29406 7.33808 7.50601 7.67509 7.84331 7.87937 7.95251 8.05986 8.28826 8.36916 8.49381 9.08418 9.33767 9.65858 10.15540 11.16470 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.035867 B = 0.003224 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.464902 B = 8683.806122 C = 9009.206693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.118 4.118 3 C 0.283 3.717 4 H 0.053 0.947 5 C -0.529 4.529 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.896 3.104 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.702 5.702 14 C 0.663 3.337 15 O -0.584 6.584 16 N -0.647 5.647 17 C 0.603 3.397 18 N -0.510 5.510 19 C 0.376 3.624 20 N -0.411 5.411 21 N -0.519 5.519 22 H 0.450 0.550 23 C 0.134 3.866 24 C -0.134 4.134 25 C -0.129 4.129 26 C -0.049 4.049 27 H 0.016 0.984 28 H 0.042 0.958 29 H 0.051 0.949 30 H 0.076 0.924 31 H 0.031 0.969 32 H 0.262 0.738 33 H 0.386 0.614 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.115 0.885 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.494 12.604 15.124 29.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.157 4.157 3 C 0.180 3.820 4 H 0.071 0.929 5 C -0.568 4.568 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.723 3.277 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.200 1.200 13 N -0.353 5.353 14 C 0.361 3.639 15 O -0.461 6.461 16 N -0.409 5.409 17 C 0.239 3.761 18 N -0.244 5.244 19 C 0.101 3.899 20 N -0.214 5.214 21 N -0.256 5.256 22 H 0.299 0.701 23 C 0.013 3.987 24 C -0.173 4.173 25 C -0.167 4.167 26 C -0.088 4.088 27 H 0.035 0.965 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.094 0.906 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.217 0.783 34 H 0.107 0.893 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.117 0.883 38 H 0.109 0.891 39 H 0.094 0.906 40 H 0.133 0.867 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -21.083 12.047 14.088 28.073 hybrid contribution 1.246 0.182 1.144 1.702 sum -19.837 12.229 15.233 27.840 Atomic orbital electron populations 1.21787 0.97990 0.97402 1.01795 1.21843 0.93078 1.00195 1.00623 1.18610 0.93657 0.88498 0.81265 0.92921 1.21261 0.90972 1.42998 1.01527 0.92202 1.24881 0.98179 0.95520 0.95064 1.70016 1.35436 1.44446 1.02061 0.86560 0.85477 0.78607 0.77013 1.20558 1.21332 1.19999 1.45431 1.13767 1.57890 1.18165 1.16695 0.83690 0.79863 0.83637 1.90951 1.51251 1.62337 1.41523 1.68669 1.12133 1.28995 1.31076 1.20500 0.89858 0.86033 0.79659 1.72004 1.00337 1.24132 1.27909 1.24479 0.96707 0.87971 0.80746 1.47493 1.05669 1.54096 1.14145 1.44814 1.05398 1.58462 1.16886 0.70136 1.21971 0.87995 0.95361 0.93336 1.21980 0.97583 0.98987 0.98743 1.21749 0.98326 0.99173 0.97422 1.20686 0.85891 1.05385 0.96883 0.96454 0.93878 0.93021 0.90592 0.95045 0.92836 0.78267 0.89350 0.89918 0.89994 0.88323 0.89089 0.90560 0.86695 0.87227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.41 8.51 37.16 0.32 -3.09 16 2 C -0.12 -3.23 5.50 -26.73 -0.15 -3.38 16 3 C 0.28 8.17 2.11 -69.08 -0.15 8.03 16 4 H 0.05 1.75 7.52 -51.93 -0.39 1.36 16 5 C -0.53 -15.59 8.66 -34.44 -0.30 -15.89 16 6 H 0.06 1.71 7.74 -52.49 -0.41 1.30 16 7 C 0.07 1.94 5.16 -17.82 -0.09 1.85 16 8 N -0.88 -26.90 12.16 55.43 0.67 -26.23 16 9 Si 0.90 22.21 29.55 -169.99 -5.02 17.19 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 13 N -0.70 -18.39 5.02 -59.99 -0.30 -18.69 16 14 C 0.66 17.32 7.03 -87.68 -0.62 16.70 16 15 O -0.58 -16.66 12.01 5.08 0.06 -16.60 16 16 N -0.65 -14.41 10.59 -17.48 -0.19 -14.60 16 17 C 0.60 11.30 8.77 -321.25 -2.82 8.48 16 18 N -0.51 -9.48 9.18 -10.82 -0.10 -9.58 16 19 C 0.38 4.49 7.70 -154.84 -1.19 3.30 16 20 N -0.41 -3.82 4.05 -57.94 -0.23 -4.06 16 21 N -0.52 -6.36 7.52 29.97 0.23 -6.13 16 22 H 0.45 4.09 8.96 -182.75 -1.64 2.45 16 23 C 0.13 0.50 7.28 -3.96 -0.03 0.47 16 24 C -0.13 -0.26 5.95 -26.51 -0.16 -0.42 16 25 C -0.13 -0.37 5.95 -26.46 -0.16 -0.53 16 26 C -0.05 -0.33 6.33 -27.46 -0.17 -0.50 16 27 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.04 1.14 5.65 -51.94 -0.29 0.84 16 29 H 0.05 1.40 7.84 -51.93 -0.41 1.00 16 30 H 0.08 2.21 6.80 -51.93 -0.35 1.86 16 31 H 0.03 0.82 8.14 -51.92 -0.42 0.39 16 32 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 33 H 0.39 9.34 8.63 -40.82 -0.35 8.99 16 34 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16 35 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 36 H 0.08 0.20 8.12 -51.93 -0.42 -0.22 16 37 H 0.10 -0.03 8.14 -51.93 -0.42 -0.45 16 38 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 39 H 0.08 0.23 8.12 -51.93 -0.42 -0.19 16 40 H 0.11 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 333.17 15.07 5.02 5.02 Total: -1.00 -41.16 333.17 -12.57 -53.73 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -7.20 Total: 4.92 kcal Atomic # 6 Polarization: 20.53 SS G_CDS: -5.51 Total: 15.02 kcal Atomic # 7 Polarization: -79.37 SS G_CDS: 0.08 Total: -79.29 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: 0.06 Total: -16.60 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -41.16 -12.57 -53.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456003102.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.236 kcal (2) G-P(sol) polarization free energy of solvation -41.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds