Wall clock time and date at job start Tue Mar 31 2020 03:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47127 * 2 1 4 4 H 1.09000 * 109.47575 * 304.89387 * 3 2 1 5 5 C 1.50706 * 109.47241 * 184.89984 * 3 2 1 6 6 H 1.08001 * 119.99776 * 245.45219 * 5 3 2 7 7 C 1.37870 * 120.00287 * 65.44704 * 5 3 2 8 8 N 1.31520 * 119.99758 * 9.47239 * 7 5 3 9 9 Si 1.86796 * 120.00408 * 189.47192 * 7 5 3 10 10 H 1.48503 * 109.47348 * 84.99199 * 9 7 5 11 11 H 1.48494 * 109.47573 * 204.99694 * 9 7 5 12 12 H 1.48504 * 109.47217 * 324.99696 * 9 7 5 13 13 N 1.46499 * 109.47611 * 64.89601 * 3 2 1 14 14 C 1.34772 * 119.99943 * 275.00454 * 13 3 2 15 15 O 1.21821 * 120.00156 * 359.97438 * 14 13 3 16 16 N 1.33924 * 119.99852 * 179.97438 * 14 13 3 17 17 C 1.32759 * 119.99890 * 179.97438 * 16 14 13 18 18 N 1.34454 * 126.09626 * 359.97438 * 17 16 14 19 19 C 1.30378 * 110.14509 * 180.02562 * 18 17 16 20 20 N 1.35530 * 109.16460 * 0.02562 * 19 18 17 21 21 N 1.37461 * 126.09424 * 179.97438 * 17 16 14 22 22 H 0.97002 * 127.11186 * 359.87334 * 21 17 16 23 23 C 1.46392 * 125.05474 * 179.89566 * 20 19 18 24 24 C 1.53271 * 108.77722 * 343.04532 * 23 20 19 25 25 C 1.53147 * 109.46165 * 50.22920 * 24 23 20 26 26 C 1.51167 * 127.13037 * 180.13134 * 19 18 17 27 27 H 1.09003 * 109.47162 * 179.97438 * 1 2 3 28 28 H 1.08989 * 109.47219 * 300.00517 * 1 2 3 29 29 H 1.09007 * 109.46550 * 60.00715 * 1 2 3 30 30 H 1.08995 * 109.47624 * 239.99400 * 2 1 3 31 31 H 1.09010 * 109.47019 * 119.99485 * 2 1 3 32 32 H 0.97005 * 119.99646 * 179.97438 * 8 7 5 33 33 H 0.97007 * 120.00008 * 94.99703 * 13 3 2 34 34 H 1.08995 * 109.58618 * 223.25104 * 23 20 19 35 35 H 1.09004 * 109.58531 * 102.83312 * 23 20 19 36 36 H 1.09004 * 109.47557 * 290.22935 * 24 23 20 37 37 H 1.09002 * 109.47121 * 170.22792 * 24 23 20 38 38 H 1.08998 * 109.50126 * 170.54382 * 25 24 23 39 39 H 1.09006 * 109.49671 * 50.43417 * 25 24 23 40 40 H 1.09000 * 109.70951 * 44.15801 * 26 19 18 41 41 H 1.09006 * 109.70970 * 283.56575 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6069 1.9810 -0.8429 5 6 3.5421 1.4442 -0.1214 6 1 4.1493 1.8090 0.6939 7 6 4.1413 0.9800 -1.2730 8 7 3.4098 0.7113 -2.3325 9 14 5.9920 0.7327 -1.3288 10 1 6.3291 -0.6067 -0.7832 11 1 6.4620 0.8273 -2.7342 12 1 6.6563 1.7808 -0.5130 13 7 1.6503 2.0983 1.2507 14 6 0.4329 2.6652 1.3634 15 8 -0.3434 2.6327 0.4252 16 7 0.0765 3.2643 2.5070 17 6 -1.1226 3.8232 2.6178 18 7 -2.0706 3.8600 1.6651 19 6 -3.1259 4.4861 2.1056 20 7 -2.9046 4.8884 3.3807 21 7 -1.6163 4.4675 3.7272 22 1 -1.1651 4.6016 4.5753 23 6 -3.8614 5.6255 4.2079 24 6 -4.9392 6.2265 3.2988 25 6 -5.4909 5.1382 2.3732 26 6 -4.4128 4.7447 1.3558 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8898 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.8314 0.3851 -3.1429 33 1 2.2686 2.1244 1.9978 34 1 -3.3451 6.4244 4.7400 35 1 -4.3244 4.9465 4.9241 36 1 -4.5046 7.0269 2.7000 37 1 -5.7476 6.6279 3.9100 38 1 -6.3667 5.5178 1.8470 39 1 -5.7704 4.2656 2.9638 40 1 -4.7182 3.8416 0.8273 41 1 -4.2662 5.5561 0.6428 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456003102.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:10 Heat of formation + Delta-G solvation = 60.717885 kcal Electronic energy + Delta-G solvation = -23646.621390 eV Core-core repulsion = 20177.539284 eV Total energy + Delta-G solvation = -3469.082106 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.36236 -40.41078 -38.05037 -36.82804 -34.95851 -34.23074 -34.08015 -32.65148 -31.49653 -30.16862 -28.77680 -25.55884 -25.16561 -23.88341 -23.63522 -21.77981 -20.83987 -20.54905 -19.33386 -18.84603 -17.67827 -17.48897 -17.08306 -16.48108 -16.25176 -16.09812 -15.63558 -15.21418 -15.12515 -14.99035 -14.55175 -14.40596 -13.96977 -13.45996 -13.28551 -13.13550 -12.86679 -12.58660 -12.23159 -12.17344 -12.15208 -12.04146 -12.00950 -11.65621 -11.52576 -11.38329 -11.34387 -11.31562 -11.04266 -10.50540 -9.91158 -9.46663 -8.81298 -8.15170 -6.28571 -0.01344 0.16800 1.43555 1.46902 1.56536 1.71956 2.30288 2.45921 2.97991 3.12522 3.13156 3.27783 3.58027 3.70641 3.80757 4.15852 4.31697 4.34706 4.40804 4.48294 4.54806 4.64745 4.79671 4.80407 4.86243 4.95111 5.01841 5.08903 5.15003 5.24025 5.34332 5.47534 5.49211 5.60538 5.74160 5.79645 6.08697 6.19991 6.29825 6.60354 6.81606 7.05352 7.38518 7.39301 8.29610 8.94198 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.035867 B = 0.003224 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.464902 B = 8683.806122 C = 9009.206693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.109 4.109 3 C 0.294 3.706 4 H -0.005 1.005 5 C -0.551 4.551 6 H 0.066 0.934 7 C 0.015 3.985 8 N -0.917 5.917 9 Si 0.974 3.026 10 H -0.268 1.268 11 H -0.282 1.282 12 H -0.266 1.266 13 N -0.707 5.707 14 C 0.661 3.339 15 O -0.625 6.625 16 N -0.683 5.683 17 C 0.594 3.406 18 N -0.586 5.586 19 C 0.381 3.619 20 N -0.383 5.383 21 N -0.495 5.495 22 H 0.465 0.535 23 C 0.117 3.883 24 C -0.129 4.129 25 C -0.121 4.121 26 C -0.052 4.052 27 H 0.047 0.953 28 H 0.033 0.967 29 H 0.024 0.976 30 H 0.055 0.945 31 H 0.042 0.958 32 H 0.266 0.734 33 H 0.393 0.607 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.080 0.920 37 H 0.137 0.863 38 H 0.118 0.882 39 H 0.079 0.921 40 H 0.109 0.891 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.367 14.104 17.651 32.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.148 4.148 3 C 0.190 3.810 4 H 0.013 0.987 5 C -0.589 4.589 6 H 0.084 0.916 7 C -0.185 4.185 8 N -0.555 5.555 9 Si 0.798 3.202 10 H -0.193 1.193 11 H -0.208 1.208 12 H -0.191 1.191 13 N -0.358 5.358 14 C 0.359 3.641 15 O -0.505 6.505 16 N -0.450 5.450 17 C 0.230 3.770 18 N -0.323 5.323 19 C 0.107 3.893 20 N -0.183 5.183 21 N -0.230 5.230 22 H 0.318 0.682 23 C -0.001 4.001 24 C -0.167 4.167 25 C -0.159 4.159 26 C -0.092 4.092 27 H 0.066 0.934 28 H 0.052 0.948 29 H 0.044 0.956 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.226 0.774 34 H 0.131 0.869 35 H 0.126 0.874 36 H 0.099 0.901 37 H 0.155 0.845 38 H 0.137 0.863 39 H 0.098 0.902 40 H 0.127 0.873 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -23.095 13.662 16.772 31.644 hybrid contribution 1.461 -0.049 0.497 1.544 sum -21.634 13.613 17.269 30.847 Atomic orbital electron populations 1.21560 0.96821 0.98655 1.00013 1.21684 0.93989 0.99186 0.99940 1.18217 0.93456 0.88615 0.80750 0.98720 1.21546 0.91310 1.43832 1.02229 0.91624 1.25845 1.03695 0.94664 0.94281 1.70171 1.37860 1.44795 1.02709 0.85340 0.78567 0.79041 0.77243 1.19277 1.20794 1.19083 1.45184 1.14520 1.58704 1.17422 1.17010 0.83072 0.79621 0.84397 1.90894 1.52230 1.64198 1.43171 1.68576 1.14609 1.32696 1.29160 1.20662 0.89483 0.85586 0.81290 1.71901 1.02580 1.27983 1.29802 1.25424 0.96661 0.85625 0.81547 1.48296 1.04310 1.51668 1.14044 1.44870 1.06470 1.55746 1.15922 0.68229 1.22759 0.87376 0.96182 0.93751 1.22082 0.97677 0.98290 0.98679 1.21788 0.97530 0.99784 0.96749 1.21063 0.84517 1.05631 0.97954 0.93372 0.94800 0.95641 0.92650 0.93893 0.92551 0.77420 0.86905 0.87354 0.90106 0.84539 0.86349 0.90224 0.87274 0.86040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -6.08 8.51 71.98 0.61 -5.47 16 2 C -0.11 -6.21 5.50 30.59 0.17 -6.04 16 3 C 0.29 18.00 2.11 44.25 0.09 18.09 16 4 H -0.01 -0.37 7.52 -2.39 -0.02 -0.39 16 5 C -0.55 -33.58 8.66 25.60 0.22 -33.36 16 6 H 0.07 3.83 7.74 -2.91 -0.02 3.80 16 7 C 0.02 0.90 5.16 84.65 0.44 1.34 16 8 N -0.92 -57.89 12.16 21.45 0.26 -57.63 16 9 Si 0.97 46.15 29.55 68.60 2.03 48.18 16 10 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 11 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 12 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 13 N -0.71 -39.23 5.02 -461.88 -2.32 -41.55 16 14 C 0.66 36.75 7.03 179.32 1.26 38.01 16 15 O -0.63 -38.32 12.01 -4.73 -0.06 -38.38 16 16 N -0.68 -31.99 10.59 -327.86 -3.47 -35.46 16 17 C 0.59 22.93 8.77 260.94 2.29 25.22 16 18 N -0.59 -22.60 9.18 -188.16 -1.73 -24.33 16 19 C 0.38 8.77 7.70 138.16 1.06 9.84 16 20 N -0.38 -6.18 4.05 -337.23 -1.37 -7.55 16 21 N -0.50 -11.56 7.52 -59.08 -0.44 -12.01 16 22 H 0.47 7.66 8.96 -213.45 -1.91 5.74 16 23 C 0.12 0.32 7.28 86.49 0.63 0.95 16 24 C -0.13 0.17 5.95 30.73 0.18 0.35 16 25 C -0.12 -0.18 5.95 30.77 0.18 0.00 16 26 C -0.05 -0.61 6.33 30.12 0.19 -0.42 16 27 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.03 1.86 5.65 -2.39 -0.01 1.85 16 29 H 0.02 1.45 7.84 -2.38 -0.02 1.43 16 30 H 0.05 3.36 6.80 -2.39 -0.02 3.34 16 31 H 0.04 2.30 8.14 -2.38 -0.02 2.28 16 32 H 0.27 15.66 8.31 -92.70 -0.77 14.89 16 33 H 0.39 20.03 8.63 -92.70 -0.80 19.23 16 34 H 0.11 -0.08 8.14 -2.39 -0.02 -0.10 16 35 H 0.11 -0.07 8.14 -2.39 -0.02 -0.09 16 36 H 0.08 0.01 8.12 -2.39 -0.02 -0.01 16 37 H 0.14 -1.00 8.14 -2.39 -0.02 -1.02 16 38 H 0.12 -0.34 8.14 -2.39 -0.02 -0.36 16 39 H 0.08 0.13 8.12 -2.38 -0.02 0.11 16 40 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.12 1.17 8.14 -2.38 -0.02 1.15 16 Total: -1.00 -98.52 333.17 -1.41 -99.93 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: -1.65 Total: 20.29 kcal Atomic # 6 Polarization: 41.17 SS G_CDS: 7.33 Total: 48.50 kcal Atomic # 7 Polarization: -169.45 SS G_CDS: -9.07 Total: -178.52 kcal Atomic # 8 Polarization: -38.32 SS G_CDS: -0.06 Total: -38.38 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -98.52 -1.41 -99.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456003102.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.647 kcal (2) G-P(sol) polarization free energy of solvation -98.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds