Wall clock time and date at job start Tue Mar 31 2020 03:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47195 * 2 1 4 4 H 1.08994 * 109.47341 * 54.99772 * 3 2 1 5 5 C 1.50702 * 109.47006 * 175.00183 * 3 2 1 6 6 H 1.07997 * 120.00246 * 120.00383 * 5 3 2 7 7 C 1.37886 * 119.99653 * 299.99552 * 5 3 2 8 8 N 1.31515 * 119.99718 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 119.99990 * 0.02562 * 7 5 3 10 10 H 1.48501 * 109.47033 * 89.99938 * 9 7 5 11 11 H 1.48502 * 109.46952 * 209.99857 * 9 7 5 12 12 H 1.48497 * 109.47106 * 330.00086 * 9 7 5 13 13 N 1.46504 * 109.47104 * 294.99851 * 3 2 1 14 14 C 1.34771 * 119.99804 * 84.99875 * 13 3 2 15 15 O 1.21825 * 120.00577 * 0.02562 * 14 13 3 16 16 N 1.33921 * 119.99593 * 180.02562 * 14 13 3 17 17 C 1.32761 * 119.99717 * 180.02562 * 16 14 13 18 18 N 1.34454 * 126.09806 * 359.97438 * 17 16 14 19 19 C 1.30384 * 110.14857 * 180.02562 * 18 17 16 20 20 N 1.35543 * 109.15647 * 359.97438 * 19 18 17 21 21 N 1.37470 * 126.09629 * 180.02562 * 17 16 14 22 22 H 0.97005 * 127.10949 * 359.94149 * 21 17 16 23 23 C 1.46389 * 125.04394 * 179.86145 * 20 19 18 24 24 C 1.53278 * 108.78489 * 343.04736 * 23 20 19 25 25 C 1.53143 * 109.45586 * 50.23305 * 24 23 20 26 26 C 1.51156 * 127.13265 * 180.09788 * 19 18 17 27 27 H 1.09010 * 109.47218 * 60.00122 * 1 2 3 28 28 H 1.08998 * 109.47620 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47415 * 300.00461 * 1 2 3 30 30 H 1.08994 * 109.47047 * 239.99796 * 2 1 3 31 31 H 1.08998 * 109.46850 * 120.00024 * 2 1 3 32 32 H 0.96998 * 119.99495 * 180.02562 * 8 7 5 33 33 H 0.96999 * 119.99876 * 265.00723 * 13 3 2 34 34 H 1.09008 * 109.58479 * 223.25999 * 23 20 19 35 35 H 1.09002 * 109.58334 * 102.84087 * 23 20 19 36 36 H 1.08994 * 109.47243 * 290.23807 * 24 23 20 37 37 H 1.09000 * 109.46916 * 170.22697 * 24 23 20 38 38 H 1.08999 * 109.50370 * 170.54680 * 25 24 23 39 39 H 1.09008 * 109.50605 * 50.42836 * 25 24 23 40 40 H 1.09002 * 109.71481 * 44.19364 * 26 19 18 41 41 H 1.08997 * 109.71080 * 283.60390 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8784 1.2280 8 7 5.4540 0.8803 1.3363 9 14 3.0963 0.1090 2.5701 10 1 2.8754 -1.3271 2.2634 11 1 3.7936 0.2349 3.8752 12 1 1.7877 0.8074 2.6386 13 7 1.6525 2.0975 -1.2519 14 6 0.4352 2.6644 -1.3670 15 8 -0.3427 2.6326 -0.4300 16 7 0.0808 3.2627 -2.5115 17 6 -1.1181 3.8215 -2.6248 18 7 -2.0680 3.8582 -1.6740 19 6 -3.1230 4.4833 -2.1170 20 7 -2.8992 4.8851 -3.3920 21 7 -1.6100 4.4651 -3.7355 22 1 -1.1564 4.6008 -4.5822 23 6 -3.8568 5.6167 -4.2231 24 6 -5.2524 5.4808 -3.6041 25 6 -5.1871 5.8359 -2.1159 26 6 -4.4097 4.7456 -1.3684 27 1 -0.3634 0.5139 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 5.8770 0.4819 2.1130 33 1 2.2720 2.1231 -1.9978 34 1 -3.8613 5.1984 -5.2297 35 1 -3.5760 6.6691 -4.2638 36 1 -5.6020 4.4547 -3.7178 37 1 -5.9414 6.1577 -4.1093 38 1 -6.1977 5.9034 -1.7131 39 1 -4.6807 6.7932 -1.9920 40 1 -4.1843 5.0826 -0.3566 41 1 -5.0041 3.8328 -1.3279 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456003105.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:12 Heat of formation + Delta-G solvation = 68.074238 kcal Electronic energy + Delta-G solvation = -23752.915798 eV Core-core repulsion = 20284.152687 eV Total energy + Delta-G solvation = -3468.763111 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.38048 -40.52620 -38.10608 -37.00213 -34.97403 -34.33699 -34.18163 -32.93881 -31.52144 -30.21415 -29.23748 -25.56246 -24.89038 -23.95667 -23.65615 -22.01263 -20.92232 -20.59820 -19.40572 -18.96063 -17.93092 -17.53496 -17.33636 -16.53896 -16.28924 -16.13480 -15.70967 -15.24910 -15.15733 -15.03191 -14.90737 -14.43482 -14.09901 -13.78087 -13.62968 -13.22861 -12.90816 -12.73220 -12.39743 -12.23553 -12.15663 -12.02751 -11.82621 -11.63560 -11.43998 -11.37291 -11.33431 -11.27553 -11.19128 -10.82137 -9.96115 -9.57333 -8.85680 -8.36209 -6.41060 -0.03385 0.14940 1.27673 1.34807 1.48747 1.68613 2.27970 2.29502 2.91424 2.97536 3.05058 3.21493 3.56923 3.69585 3.80292 4.14182 4.25364 4.30711 4.33952 4.34193 4.38815 4.46638 4.68258 4.79249 4.85852 4.88590 4.94406 4.98316 5.02846 5.14539 5.16656 5.30491 5.34164 5.46816 5.48899 5.58417 5.89268 6.21739 6.30297 6.56998 6.60077 7.00591 7.21955 7.30149 8.21151 8.79754 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.034216 B = 0.003468 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.124359 B = 8070.761405 C = 8457.463631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.133 4.133 3 C 0.268 3.732 4 H 0.014 0.986 5 C -0.534 4.534 6 H 0.049 0.951 7 C 0.028 3.972 8 N -0.936 5.936 9 Si 0.942 3.058 10 H -0.255 1.255 11 H -0.286 1.286 12 H -0.264 1.264 13 N -0.703 5.703 14 C 0.666 3.334 15 O -0.622 6.622 16 N -0.685 5.685 17 C 0.596 3.404 18 N -0.583 5.583 19 C 0.382 3.618 20 N -0.383 5.383 21 N -0.495 5.495 22 H 0.465 0.535 23 C 0.116 3.884 24 C -0.129 4.129 25 C -0.122 4.122 26 C -0.052 4.052 27 H 0.041 0.959 28 H 0.058 0.942 29 H 0.035 0.965 30 H 0.062 0.938 31 H 0.047 0.953 32 H 0.271 0.729 33 H 0.395 0.605 34 H 0.113 0.887 35 H 0.107 0.893 36 H 0.082 0.918 37 H 0.136 0.864 38 H 0.118 0.882 39 H 0.078 0.922 40 H 0.110 0.890 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.795 13.100 -15.027 36.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.172 4.172 3 C 0.162 3.838 4 H 0.032 0.968 5 C -0.572 4.572 6 H 0.067 0.933 7 C -0.171 4.171 8 N -0.575 5.575 9 Si 0.768 3.232 10 H -0.181 1.181 11 H -0.213 1.213 12 H -0.189 1.189 13 N -0.354 5.354 14 C 0.364 3.636 15 O -0.501 6.501 16 N -0.452 5.452 17 C 0.232 3.768 18 N -0.320 5.320 19 C 0.108 3.892 20 N -0.182 5.182 21 N -0.230 5.230 22 H 0.318 0.682 23 C -0.001 4.001 24 C -0.167 4.167 25 C -0.160 4.160 26 C -0.091 4.091 27 H 0.060 0.940 28 H 0.077 0.923 29 H 0.054 0.946 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.229 0.771 34 H 0.131 0.869 35 H 0.125 0.875 36 H 0.101 0.899 37 H 0.153 0.847 38 H 0.137 0.863 39 H 0.096 0.904 40 H 0.128 0.872 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -30.379 12.684 -14.246 35.871 hybrid contribution 0.884 -0.147 -0.294 0.943 sum -29.496 12.537 -14.539 35.193 Atomic orbital electron populations 1.21637 0.95312 0.99872 1.01155 1.22181 0.95772 0.98576 1.00633 1.18609 0.92847 0.89270 0.83050 0.96781 1.21312 0.90352 1.38552 1.06990 0.93278 1.25581 0.95927 0.95777 0.99802 1.69989 1.10233 1.46322 1.30953 0.85953 0.79107 0.79999 0.78123 1.18057 1.21335 1.18932 1.44899 1.14818 1.58837 1.16875 1.16911 0.82757 0.79455 0.84510 1.90889 1.51952 1.64174 1.43104 1.68558 1.14759 1.32830 1.29074 1.20636 0.89459 0.85440 0.81297 1.71890 1.02405 1.28059 1.29674 1.25437 0.96720 0.85601 0.81400 1.48308 1.04217 1.51693 1.14008 1.44907 1.06475 1.55545 1.16049 0.68236 1.22766 0.85877 0.96685 0.94805 1.22078 0.93122 1.05425 0.96059 1.21790 1.02644 0.97014 0.94525 1.21058 0.85701 1.03313 0.99027 0.94005 0.92288 0.94552 0.91900 0.93452 0.91978 0.77128 0.86862 0.87481 0.89948 0.84652 0.86340 0.90371 0.87218 0.85811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.83 8.51 71.98 0.61 -5.21 16 2 C -0.13 -6.86 5.11 30.60 0.16 -6.70 16 3 C 0.27 15.32 1.83 44.25 0.08 15.40 16 4 H 0.01 0.90 6.63 -2.39 -0.02 0.89 16 5 C -0.53 -33.50 9.31 25.60 0.24 -33.26 16 6 H 0.05 3.29 7.98 -2.91 -0.02 3.27 16 7 C 0.03 1.76 5.45 84.66 0.46 2.22 16 8 N -0.94 -60.66 13.96 21.45 0.30 -60.36 16 9 Si 0.94 49.33 24.41 68.60 1.67 51.01 16 10 H -0.26 -12.43 6.83 99.48 0.68 -11.75 16 11 H -0.29 -14.41 7.11 99.48 0.71 -13.71 16 12 H -0.26 -14.08 6.53 99.48 0.65 -13.43 16 13 N -0.70 -37.41 5.03 -461.87 -2.32 -39.73 16 14 C 0.67 34.94 7.04 179.32 1.26 36.20 16 15 O -0.62 -35.24 12.01 -4.75 -0.06 -35.30 16 16 N -0.68 -30.68 10.59 -327.85 -3.47 -34.15 16 17 C 0.60 21.78 8.77 260.94 2.29 24.07 16 18 N -0.58 -20.99 9.18 -188.15 -1.73 -22.72 16 19 C 0.38 8.02 7.70 138.15 1.06 9.08 16 20 N -0.38 -5.61 4.05 -337.21 -1.37 -6.97 16 21 N -0.50 -10.87 7.52 -59.07 -0.44 -11.31 16 22 H 0.47 7.19 8.96 -213.46 -1.91 5.27 16 23 C 0.12 0.19 7.28 86.49 0.63 0.82 16 24 C -0.13 0.32 5.95 30.74 0.18 0.50 16 25 C -0.12 -0.03 5.95 30.76 0.18 0.15 16 26 C -0.05 -0.50 6.33 30.11 0.19 -0.31 16 27 H 0.04 2.09 5.65 -2.38 -0.01 2.07 16 28 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 29 H 0.04 1.81 7.84 -2.39 -0.02 1.79 16 30 H 0.06 3.11 8.14 -2.39 -0.02 3.09 16 31 H 0.05 2.44 3.21 -2.39 -0.01 2.44 16 32 H 0.27 16.31 8.31 -92.71 -0.77 15.54 16 33 H 0.40 19.99 8.64 -92.71 -0.80 19.19 16 34 H 0.11 -0.20 8.14 -2.38 -0.02 -0.22 16 35 H 0.11 -0.14 8.14 -2.39 -0.02 -0.16 16 36 H 0.08 -0.12 8.12 -2.39 -0.02 -0.14 16 37 H 0.14 -1.11 8.14 -2.39 -0.02 -1.13 16 38 H 0.12 -0.48 8.14 -2.39 -0.02 -0.50 16 39 H 0.08 0.06 8.12 -2.38 -0.02 0.04 16 40 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -97.78 325.04 -1.79 -99.57 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: -1.72 Total: 17.00 kcal Atomic # 6 Polarization: 35.63 SS G_CDS: 7.35 Total: 42.98 kcal Atomic # 7 Polarization: -166.22 SS G_CDS: -9.03 Total: -175.25 kcal Atomic # 8 Polarization: -35.24 SS G_CDS: -0.06 Total: -35.30 kcal Atomic # 14 Polarization: 49.33 SS G_CDS: 1.67 Total: 51.01 kcal Total: -97.78 -1.79 -99.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456003105.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.642 kcal (2) G-P(sol) polarization free energy of solvation -97.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds