Wall clock time and date at job start Tue Mar 31 2020 03:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00126 * 2 1 4 4 C 1.53003 * 109.46922 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47020 * 65.00496 * 4 3 2 6 6 C 1.36937 * 119.99822 * 268.62333 * 5 4 3 7 7 H 1.08003 * 120.00294 * 144.06177 * 6 5 4 8 8 C 1.38808 * 120.00090 * 324.06797 * 6 5 4 9 9 N 1.31625 * 120.00174 * 338.22583 * 8 6 5 10 10 Si 1.86806 * 120.00194 * 158.22790 * 8 6 5 11 11 H 1.48499 * 109.46976 * 59.99852 * 10 8 6 12 12 H 1.48498 * 109.47148 * 179.97438 * 10 8 6 13 13 H 1.48492 * 109.47027 * 300.00112 * 10 8 6 14 14 C 1.46498 * 120.00386 * 88.62965 * 5 4 3 15 15 C 1.52999 * 109.46752 * 269.99904 * 14 5 4 16 16 C 1.50710 * 109.47006 * 179.97438 * 15 14 5 17 17 O 1.21280 * 119.99811 * 0.02562 * 16 15 14 18 18 N 1.34770 * 119.99802 * 180.27219 * 16 15 14 19 19 C 1.39947 * 120.00020 * 174.58801 * 18 16 15 20 20 C 1.39288 * 120.48516 * 327.58991 * 19 18 16 21 21 C 1.38507 * 118.35692 * 179.73821 * 20 19 18 22 22 C 1.38269 * 119.23741 * 0.52961 * 21 20 19 23 23 N 1.31857 * 120.91837 * 359.73035 * 22 21 20 24 24 C 1.31817 * 121.79621 * 0.02562 * 23 22 21 25 25 H 1.09001 * 109.46888 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46952 * 299.99657 * 1 2 3 27 27 H 1.09000 * 109.46838 * 59.99969 * 1 2 3 28 28 H 1.08995 * 109.46664 * 60.00673 * 3 2 1 29 29 H 1.08998 * 109.47113 * 300.00388 * 3 2 1 30 30 H 1.08995 * 109.47284 * 305.00191 * 4 3 2 31 31 H 1.09005 * 109.46881 * 184.99955 * 4 3 2 32 32 H 0.96997 * 120.00184 * 179.97438 * 9 8 6 33 33 H 1.08994 * 109.47355 * 149.99617 * 14 5 4 34 34 H 1.08999 * 109.46866 * 29.99547 * 14 5 4 35 35 H 1.09001 * 109.47341 * 60.00112 * 15 14 5 36 36 H 1.08999 * 109.47144 * 299.99473 * 15 14 5 37 37 H 0.97001 * 120.00361 * 354.59251 * 18 16 15 38 38 H 1.07992 * 120.81832 * 359.97438 * 20 19 18 39 39 H 1.08008 * 120.38195 * 180.26517 * 21 20 19 40 40 H 1.08000 * 119.54011 * 179.74851 * 22 21 20 41 41 H 1.07999 * 119.66340 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.1238 -0.7948 -1.3286 7 1 3.8747 -1.3151 -2.2416 8 6 4.5939 -1.5040 -0.2318 9 7 5.2883 -0.8883 0.7016 10 14 4.2411 -3.3322 -0.0805 11 1 4.8222 -4.0465 -1.2456 12 1 4.8483 -3.8515 1.1711 13 1 2.7729 -3.5518 -0.0473 14 6 4.2575 1.3983 -2.4238 15 6 2.9815 1.5624 -3.2520 16 6 3.2713 2.4208 -4.4564 17 8 4.3884 2.8578 -4.6349 18 7 2.2878 2.7069 -5.3322 19 6 2.5268 3.5946 -6.3874 20 6 3.4141 4.6567 -6.2301 21 6 3.6218 5.5051 -7.3050 22 6 2.9392 5.2787 -8.4859 23 7 2.1015 4.2668 -8.6009 24 6 1.8785 3.4331 -7.6045 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6887 1.8463 0.8900 29 1 1.6886 1.8464 -0.8899 30 1 3.8515 0.5681 0.8409 31 1 3.9786 2.1765 0.0889 32 1 5.6165 -1.3838 1.4681 33 1 5.0268 0.9226 -3.0320 34 1 4.6069 2.3777 -2.0968 35 1 2.2123 2.0383 -2.6438 36 1 2.6322 0.5831 -3.5790 37 1 1.4142 2.2976 -5.2313 38 1 3.9301 4.8126 -5.2943 39 1 4.3060 6.3366 -7.2204 40 1 3.0944 5.9396 -9.3259 41 1 1.1848 2.6160 -7.7364 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459528362.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:05 Heat of formation + Delta-G solvation = -16.947499 kcal Electronic energy + Delta-G solvation = -23368.997703 eV Core-core repulsion = 19864.255022 eV Total energy + Delta-G solvation = -3504.742681 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.82717 -39.17922 -37.30211 -35.54004 -35.00641 -32.37829 -31.96094 -30.67252 -29.69358 -28.15377 -25.70879 -24.78392 -23.91432 -23.33721 -22.07662 -20.44060 -19.98424 -17.95277 -17.13865 -16.96960 -16.63997 -16.05989 -15.74429 -15.12169 -14.96570 -14.69225 -14.35986 -14.07516 -13.99627 -13.78457 -13.47045 -13.15248 -13.04392 -12.48170 -12.28192 -11.98248 -11.83785 -11.16783 -10.97290 -10.92445 -10.76659 -10.69359 -10.51676 -10.11353 -9.97007 -9.88872 -9.81406 -9.73145 -9.39496 -8.84284 -8.40632 -8.38574 -6.58417 -5.72164 -3.27356 0.90802 1.16163 2.69983 2.97418 3.45332 3.50162 3.55186 3.71566 4.34171 4.53575 4.63821 4.67672 4.76014 4.92755 5.00370 5.25889 5.38686 5.44055 5.54680 5.61955 5.69999 5.72798 5.78389 5.92342 6.00123 6.04367 6.07831 6.14555 6.24118 6.31351 6.53322 6.66551 6.68696 6.71486 7.02955 7.28525 7.65595 7.79530 7.86921 8.02441 8.15822 8.58020 9.23134 9.87462 10.40889 11.30571 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.021681 B = 0.003468 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.119195 B = 8071.871750 C = 8429.338500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.353 6.353 3 C 0.044 3.956 4 C 0.139 3.861 5 N -0.574 5.574 6 C -0.247 4.247 7 H 0.057 0.943 8 C 0.019 3.981 9 N -0.892 5.892 10 Si 0.899 3.101 11 H -0.285 1.285 12 H -0.293 1.293 13 H -0.281 1.281 14 C 0.162 3.838 15 C -0.158 4.158 16 C 0.517 3.483 17 O -0.519 6.519 18 N -0.679 5.679 19 C 0.108 3.892 20 C -0.084 4.084 21 C -0.150 4.150 22 C 0.070 3.930 23 N -0.467 5.467 24 C 0.068 3.932 25 H 0.074 0.926 26 H 0.026 0.974 27 H 0.027 0.973 28 H 0.024 0.976 29 H 0.027 0.973 30 H 0.107 0.893 31 H 0.040 0.960 32 H 0.254 0.746 33 H 0.058 0.942 34 H 0.041 0.959 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.413 0.587 38 H 0.147 0.853 39 H 0.137 0.863 40 H 0.155 0.845 41 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.407 10.602 -10.022 17.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.271 6.271 3 C -0.035 4.035 4 C 0.012 3.988 5 N -0.293 5.293 6 C -0.376 4.376 7 H 0.075 0.925 8 C -0.180 4.180 9 N -0.535 5.535 10 Si 0.728 3.272 11 H -0.211 1.211 12 H -0.219 1.219 13 H -0.207 1.207 14 C 0.034 3.966 15 C -0.201 4.201 16 C 0.306 3.694 17 O -0.393 6.393 18 N -0.325 5.325 19 C 0.011 3.989 20 C -0.112 4.112 21 C -0.171 4.171 22 C -0.088 4.088 23 N -0.176 5.176 24 C -0.092 4.092 25 H 0.093 0.907 26 H 0.045 0.955 27 H 0.046 0.954 28 H 0.043 0.957 29 H 0.045 0.955 30 H 0.125 0.875 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.059 0.941 35 H 0.106 0.894 36 H 0.113 0.887 37 H 0.249 0.751 38 H 0.165 0.835 39 H 0.155 0.845 40 H 0.172 0.828 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -8.778 10.496 -10.674 17.354 hybrid contribution -0.665 -0.761 0.966 1.398 sum -9.443 9.734 -9.708 16.678 Atomic orbital electron populations 1.22638 0.84334 1.01502 0.98346 1.88241 1.16441 1.27627 1.94790 1.23536 0.99065 0.84111 0.96756 1.21101 0.87326 0.96875 0.93472 1.43696 1.75567 1.03244 1.06767 1.18804 1.37427 0.81716 0.99676 0.92487 1.25004 0.96446 0.97742 0.98851 1.69959 1.35167 1.35935 1.12469 0.86447 0.78394 0.85528 0.76791 1.21087 1.21902 1.20715 1.20586 0.91565 0.95063 0.89357 1.22680 1.05055 0.99127 0.93219 1.21660 0.83795 0.80247 0.83693 1.90681 1.21967 1.52029 1.74644 1.43869 1.16233 1.45235 1.27159 1.18927 0.99197 0.91281 0.89506 1.21699 0.97233 0.91649 1.00592 1.22086 1.00633 1.00453 0.93887 1.22663 0.93347 0.95490 0.97311 1.67606 1.15733 1.03657 1.30574 1.22574 1.00741 0.98898 0.87034 0.90715 0.95517 0.95410 0.95746 0.95497 0.87544 0.94143 0.93632 0.92401 0.94055 0.89418 0.88662 0.75105 0.83529 0.84533 0.82782 0.82689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 101.05 1.11 1.57 16 2 O -0.35 -7.38 10.24 -35.23 -0.36 -7.74 16 3 C 0.04 0.85 6.28 37.16 0.23 1.08 16 4 C 0.14 3.13 5.74 -4.04 -0.02 3.11 16 5 N -0.57 -13.66 2.41 -173.24 -0.42 -14.07 16 6 C -0.25 -6.58 9.05 -15.06 -0.14 -6.72 16 7 H 0.06 1.52 7.92 -52.48 -0.42 1.11 16 8 C 0.02 0.53 4.95 -17.43 -0.09 0.44 16 9 N -0.89 -25.57 11.40 55.49 0.63 -24.94 16 10 Si 0.90 21.93 29.61 -169.99 -5.03 16.89 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 14 C 0.16 3.32 5.00 -4.04 -0.02 3.30 16 15 C -0.16 -2.51 6.00 -27.88 -0.17 -2.68 16 16 C 0.52 7.76 7.60 -10.98 -0.08 7.68 16 17 O -0.52 -9.48 13.65 5.56 0.08 -9.40 16 18 N -0.68 -7.88 5.36 -9.76 -0.05 -7.93 16 19 C 0.11 1.32 6.32 -83.54 -0.53 0.80 16 20 C -0.08 -1.05 8.77 -39.09 -0.34 -1.39 16 21 C -0.15 -1.55 10.10 -39.47 -0.40 -1.95 16 22 C 0.07 0.72 11.18 -17.53 -0.20 0.52 16 23 N -0.47 -5.60 10.35 -13.09 -0.14 -5.74 16 24 C 0.07 0.76 11.12 -17.33 -0.19 0.57 16 25 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.03 0.46 6.01 -51.93 -0.31 0.15 16 30 H 0.11 2.80 5.42 -51.93 -0.28 2.52 16 31 H 0.04 0.85 7.91 -51.93 -0.41 0.44 16 32 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 33 H 0.06 1.29 8.00 -51.93 -0.42 0.88 16 34 H 0.04 0.84 7.86 -51.93 -0.41 0.43 16 35 H 0.09 1.29 6.05 -51.93 -0.31 0.98 16 36 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 37 H 0.41 3.46 8.82 -40.82 -0.36 3.10 16 38 H 0.15 2.01 6.45 -52.49 -0.34 1.67 16 39 H 0.14 1.05 8.06 -52.48 -0.42 0.62 16 40 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 41 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 345.09 15.07 5.20 5.20 Total: -1.00 -32.52 345.09 -6.69 -39.21 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -5.77 Total: 2.21 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: -0.83 Total: 6.31 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: 0.03 Total: -52.68 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -0.28 Total: -17.14 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.89 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.52 -6.69 -39.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459528362.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.264 kcal (2) G-P(sol) polarization free energy of solvation -32.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds