Wall clock time and date at job start Tue Mar 31 2020 03:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00126 * 2 1 4 4 C 1.53003 * 109.46922 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47020 * 65.00496 * 4 3 2 6 6 C 1.36937 * 119.99822 * 268.62333 * 5 4 3 7 7 H 1.08003 * 120.00294 * 144.06177 * 6 5 4 8 8 C 1.38808 * 120.00090 * 324.06797 * 6 5 4 9 9 N 1.31625 * 120.00174 * 338.22583 * 8 6 5 10 10 Si 1.86806 * 120.00194 * 158.22790 * 8 6 5 11 11 H 1.48499 * 109.46976 * 59.99852 * 10 8 6 12 12 H 1.48498 * 109.47148 * 179.97438 * 10 8 6 13 13 H 1.48492 * 109.47027 * 300.00112 * 10 8 6 14 14 C 1.46498 * 120.00386 * 88.62965 * 5 4 3 15 15 C 1.52999 * 109.46752 * 269.99904 * 14 5 4 16 16 C 1.50710 * 109.47006 * 179.97438 * 15 14 5 17 17 O 1.21280 * 119.99811 * 0.02562 * 16 15 14 18 18 N 1.34770 * 119.99802 * 180.27219 * 16 15 14 19 19 C 1.39947 * 120.00020 * 174.58801 * 18 16 15 20 20 C 1.39288 * 120.48516 * 327.58991 * 19 18 16 21 21 C 1.38507 * 118.35692 * 179.73821 * 20 19 18 22 22 C 1.38269 * 119.23741 * 0.52961 * 21 20 19 23 23 N 1.31857 * 120.91837 * 359.73035 * 22 21 20 24 24 C 1.31817 * 121.79621 * 0.02562 * 23 22 21 25 25 H 1.09001 * 109.46888 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46952 * 299.99657 * 1 2 3 27 27 H 1.09000 * 109.46838 * 59.99969 * 1 2 3 28 28 H 1.08995 * 109.46664 * 60.00673 * 3 2 1 29 29 H 1.08998 * 109.47113 * 300.00388 * 3 2 1 30 30 H 1.08995 * 109.47284 * 305.00191 * 4 3 2 31 31 H 1.09005 * 109.46881 * 184.99955 * 4 3 2 32 32 H 0.96997 * 120.00184 * 179.97438 * 9 8 6 33 33 H 1.08994 * 109.47355 * 149.99617 * 14 5 4 34 34 H 1.08999 * 109.46866 * 29.99547 * 14 5 4 35 35 H 1.09001 * 109.47341 * 60.00112 * 15 14 5 36 36 H 1.08999 * 109.47144 * 299.99473 * 15 14 5 37 37 H 0.97001 * 120.00361 * 354.59251 * 18 16 15 38 38 H 1.07992 * 120.81832 * 359.97438 * 20 19 18 39 39 H 1.08008 * 120.38195 * 180.26517 * 21 20 19 40 40 H 1.08000 * 119.54011 * 179.74851 * 22 21 20 41 41 H 1.07999 * 119.66340 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.1238 -0.7948 -1.3286 7 1 3.8747 -1.3151 -2.2416 8 6 4.5939 -1.5040 -0.2318 9 7 5.2883 -0.8883 0.7016 10 14 4.2411 -3.3322 -0.0805 11 1 4.8222 -4.0465 -1.2456 12 1 4.8483 -3.8515 1.1711 13 1 2.7729 -3.5518 -0.0473 14 6 4.2575 1.3983 -2.4238 15 6 2.9815 1.5624 -3.2520 16 6 3.2713 2.4208 -4.4564 17 8 4.3884 2.8578 -4.6349 18 7 2.2878 2.7069 -5.3322 19 6 2.5268 3.5946 -6.3874 20 6 3.4141 4.6567 -6.2301 21 6 3.6218 5.5051 -7.3050 22 6 2.9392 5.2787 -8.4859 23 7 2.1015 4.2668 -8.6009 24 6 1.8785 3.4331 -7.6045 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6887 1.8463 0.8900 29 1 1.6886 1.8464 -0.8899 30 1 3.8515 0.5681 0.8409 31 1 3.9786 2.1765 0.0889 32 1 5.6165 -1.3838 1.4681 33 1 5.0268 0.9226 -3.0320 34 1 4.6069 2.3777 -2.0968 35 1 2.2123 2.0383 -2.6438 36 1 2.6322 0.5831 -3.5790 37 1 1.4142 2.2976 -5.2313 38 1 3.9301 4.8126 -5.2943 39 1 4.3060 6.3366 -7.2204 40 1 3.0944 5.9396 -9.3259 41 1 1.1848 2.6160 -7.7364 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459528362.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:15:03 Heat of formation + Delta-G solvation = -39.356364 kcal Electronic energy + Delta-G solvation = -23369.969424 eV Core-core repulsion = 19864.255022 eV Total energy + Delta-G solvation = -3505.714403 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.82268 -40.25046 -38.83192 -37.16416 -36.13521 -33.90507 -33.12116 -32.12843 -30.89110 -29.71699 -27.10029 -26.37528 -24.96297 -24.48725 -23.39146 -22.03858 -21.31912 -18.95189 -18.74446 -18.07498 -17.79780 -17.25271 -17.05749 -16.69949 -16.38192 -16.16533 -15.65997 -15.39424 -15.16566 -15.07653 -14.77440 -14.60748 -14.11337 -13.95645 -13.50644 -13.36548 -13.07741 -12.96494 -12.64366 -12.41024 -12.33389 -12.29030 -11.99590 -11.90355 -11.56335 -11.50252 -11.22247 -10.69215 -10.47017 -10.32373 -10.23845 -9.32640 -8.53059 -7.74867 -5.33244 0.04519 0.27287 1.49378 1.53705 1.54316 1.59620 1.94382 2.59519 2.86526 3.24091 3.37740 3.52697 3.64752 3.87073 3.89433 4.06142 4.12313 4.21149 4.30456 4.44171 4.45940 4.58469 4.64834 4.68786 4.76557 4.84242 4.89170 4.95306 4.99501 5.05592 5.11012 5.18871 5.23943 5.40177 5.73695 5.78668 5.83375 6.32005 6.48808 6.70770 6.95507 7.06341 7.25577 7.93324 8.42897 9.23424 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.021681 B = 0.003468 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.119195 B = 8071.871750 C = 8429.338500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.396 6.396 3 C 0.055 3.945 4 C 0.137 3.863 5 N -0.588 5.588 6 C -0.243 4.243 7 H 0.053 0.947 8 C -0.031 4.031 9 N -0.923 5.923 10 Si 0.951 3.049 11 H -0.279 1.279 12 H -0.298 1.298 13 H -0.280 1.280 14 C 0.165 3.835 15 C -0.138 4.138 16 C 0.523 3.477 17 O -0.557 6.557 18 N -0.659 5.659 19 C 0.090 3.910 20 C -0.103 4.103 21 C -0.149 4.149 22 C 0.071 3.929 23 N -0.487 5.487 24 C 0.070 3.930 25 H 0.079 0.921 26 H 0.043 0.957 27 H 0.049 0.951 28 H 0.045 0.955 29 H 0.050 0.950 30 H 0.069 0.931 31 H 0.047 0.953 32 H 0.248 0.752 33 H 0.030 0.970 34 H 0.039 0.961 35 H 0.107 0.893 36 H 0.098 0.902 37 H 0.430 0.570 38 H 0.130 0.870 39 H 0.162 0.838 40 H 0.186 0.814 41 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.552 11.409 -11.635 19.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.315 6.315 3 C -0.024 4.024 4 C 0.010 3.990 5 N -0.308 5.308 6 C -0.373 4.373 7 H 0.071 0.929 8 C -0.227 4.227 9 N -0.569 5.569 10 Si 0.781 3.219 11 H -0.205 1.205 12 H -0.224 1.224 13 H -0.206 1.206 14 C 0.038 3.962 15 C -0.181 4.181 16 C 0.312 3.688 17 O -0.434 6.434 18 N -0.306 5.306 19 C -0.007 4.007 20 C -0.131 4.131 21 C -0.169 4.169 22 C -0.086 4.086 23 N -0.195 5.195 24 C -0.089 4.089 25 H 0.098 0.902 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.048 0.952 34 H 0.057 0.943 35 H 0.125 0.875 36 H 0.117 0.883 37 H 0.269 0.731 38 H 0.148 0.852 39 H 0.179 0.821 40 H 0.203 0.797 41 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -10.988 11.318 -12.328 20.020 hybrid contribution -0.008 -0.898 1.371 1.639 sum -10.995 10.420 -10.956 18.695 Atomic orbital electron populations 1.22831 0.81568 1.02551 1.00217 1.88161 1.19564 1.28572 1.95194 1.23283 0.96213 0.84125 0.98756 1.21020 0.90228 0.96158 0.91563 1.43838 1.76288 1.02720 1.07988 1.18986 1.35807 0.83263 0.99259 0.92924 1.25608 0.97042 1.00924 0.99114 1.70092 1.36861 1.36935 1.12963 0.85600 0.77981 0.81891 0.76463 1.20498 1.22435 1.20585 1.20521 0.93233 0.93934 0.88536 1.22263 1.02636 0.99851 0.93309 1.21331 0.83755 0.79827 0.83869 1.90680 1.23609 1.53596 1.75543 1.43501 1.16217 1.44670 1.26215 1.19039 1.00105 0.91580 0.90005 1.21775 0.97718 0.92816 1.00823 1.22366 1.00714 1.00610 0.93175 1.23209 0.92155 0.95142 0.98080 1.67688 1.16567 1.04413 1.30877 1.22911 1.00519 0.99216 0.86291 0.90213 0.93821 0.93212 0.93700 0.93231 0.91354 0.93441 0.94299 0.95178 0.94274 0.87476 0.88348 0.73099 0.85230 0.82063 0.79745 0.80359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.70 11.01 113.37 1.25 1.95 16 2 O -0.40 -15.93 10.24 -148.98 -1.53 -17.46 16 3 C 0.05 1.99 6.28 71.98 0.45 2.44 16 4 C 0.14 6.17 5.74 86.38 0.50 6.67 16 5 N -0.59 -28.19 2.41 -702.02 -1.69 -29.88 16 6 C -0.24 -13.09 9.05 84.03 0.76 -12.33 16 7 H 0.05 2.83 7.92 -2.91 -0.02 2.81 16 8 C -0.03 -1.70 4.95 84.86 0.42 -1.28 16 9 N -0.92 -54.45 11.40 21.65 0.25 -54.20 16 10 Si 0.95 45.67 29.61 68.60 2.03 47.70 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 12 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 13 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 14 C 0.16 6.80 5.00 86.38 0.43 7.23 16 15 C -0.14 -4.22 6.00 29.85 0.18 -4.04 16 16 C 0.52 15.20 7.60 87.66 0.67 15.87 16 17 O -0.56 -20.44 13.65 -3.03 -0.04 -20.48 16 18 N -0.66 -14.08 5.36 -303.20 -1.62 -15.71 16 19 C 0.09 2.05 6.32 38.24 0.24 2.29 16 20 C -0.10 -2.50 8.77 22.59 0.20 -2.30 16 21 C -0.15 -2.78 10.10 22.34 0.23 -2.55 16 22 C 0.07 1.28 11.18 84.70 0.95 2.23 16 23 N -0.49 -10.50 10.35 -195.33 -2.02 -12.52 16 24 C 0.07 1.42 11.12 84.84 0.94 2.36 16 25 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.05 1.56 6.01 -2.39 -0.01 1.54 16 30 H 0.07 3.69 5.42 -2.39 -0.01 3.67 16 31 H 0.05 2.00 7.91 -2.38 -0.02 1.98 16 32 H 0.25 14.29 8.31 -92.71 -0.77 13.51 16 33 H 0.03 1.38 8.00 -2.39 -0.02 1.36 16 34 H 0.04 1.61 7.86 -2.39 -0.02 1.59 16 35 H 0.11 2.86 6.05 -2.39 -0.01 2.85 16 36 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 37 H 0.43 6.04 8.82 -92.71 -0.82 5.23 16 38 H 0.13 3.58 6.45 -2.91 -0.02 3.56 16 39 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 40 H 0.19 2.04 8.06 -2.91 -0.02 2.02 16 41 H 0.18 2.57 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -71.86 345.09 2.80 -69.06 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 0.22 Total: 14.97 kcal Atomic # 6 Polarization: 11.32 SS G_CDS: 7.21 Total: 18.53 kcal Atomic # 7 Polarization: -107.22 SS G_CDS: -5.09 Total: -112.31 kcal Atomic # 8 Polarization: -36.37 SS G_CDS: -1.57 Total: -37.94 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -71.86 2.80 -69.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459528362.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.701 kcal (2) G-P(sol) polarization free energy of solvation -71.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds