Wall clock time and date at job start Tue Mar 31 2020 02:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46946 * 171.60597 * 3 2 1 5 5 C 1.34767 * 120.00110 * 180.02562 * 4 3 2 6 6 O 1.21284 * 120.00091 * 359.97438 * 5 4 3 7 7 C 1.50702 * 120.00306 * 179.97438 * 5 4 3 8 8 H 1.09006 * 109.47078 * 32.49113 * 7 5 4 9 9 C 1.53006 * 109.46964 * 272.49984 * 7 5 4 10 10 N 1.46897 * 109.47304 * 152.49923 * 7 5 4 11 11 C 1.46894 * 110.99882 * 298.42217 * 10 7 5 12 12 C 1.53234 * 109.34057 * 172.74948 * 11 10 7 13 13 N 1.47078 * 108.52319 * 53.83352 * 12 11 10 14 14 C 1.34774 * 120.88642 * 128.79424 * 13 12 11 15 15 O 1.21683 * 119.99781 * 355.18445 * 14 13 12 16 16 C 1.46371 * 120.00075 * 175.18343 * 14 13 12 17 17 H 1.07998 * 120.00235 * 351.17555 * 16 14 13 18 18 C 1.40045 * 119.99955 * 171.17636 * 16 14 13 19 19 N 1.30673 * 120.00038 * 0.02562 * 18 16 14 20 20 Si 1.86808 * 120.00276 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.46732 * 89.99929 * 20 18 16 22 22 H 1.48492 * 109.47599 * 209.99921 * 20 18 16 23 23 H 1.48503 * 109.46932 * 330.00291 * 20 18 16 24 24 C 1.47087 * 118.23165 * 308.81518 * 13 12 11 25 25 C 1.46905 * 110.99759 * 174.12302 * 10 7 5 26 26 H 4.40644 * 5.51321 * 180.02562 * 4 1 2 27 27 H 1.09003 * 109.47041 * 51.60517 * 3 2 1 28 28 H 1.08997 * 109.47052 * 291.60078 * 3 2 1 29 29 H 0.97001 * 119.99817 * 359.97438 * 4 3 2 30 30 H 1.08995 * 109.46828 * 179.97438 * 9 7 5 31 31 H 1.09000 * 109.47102 * 299.99812 * 9 7 5 32 32 H 1.09000 * 109.47184 * 59.99672 * 9 7 5 33 33 H 1.08999 * 109.49303 * 52.78837 * 11 10 7 34 34 H 1.09008 * 109.49563 * 292.70802 * 11 10 7 35 35 H 1.09001 * 109.62818 * 173.53985 * 12 11 10 36 36 H 1.09005 * 109.62882 * 294.12229 * 12 11 10 37 37 H 0.96999 * 120.00061 * 180.02562 * 19 18 16 38 38 H 1.09001 * 109.62251 * 170.89598 * 24 13 12 39 39 H 1.09003 * 109.62983 * 291.47444 * 24 13 12 40 40 H 1.09007 * 109.49189 * 67.29162 * 25 10 7 41 41 H 1.08996 * 109.51553 * 307.22793 * 25 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3673 -0.2016 5 6 4.4586 1.6115 -0.2381 6 8 5.2472 0.7000 -0.1035 7 6 4.9603 3.0173 -0.4461 8 1 4.2640 3.7225 0.0079 9 6 5.0704 3.3029 -1.9452 10 7 6.2819 3.1630 0.1785 11 6 6.2078 2.9322 1.6273 12 6 7.6243 2.9137 2.2113 13 7 8.3100 4.1525 1.8133 14 6 8.9237 4.9283 2.7287 15 8 8.8413 4.6548 3.9115 16 6 9.6894 6.0998 2.3000 17 1 9.8831 6.2638 1.2502 18 6 10.1710 7.0080 3.2511 19 7 9.9371 6.8093 4.5213 20 14 11.1488 8.5028 2.7041 21 1 10.2223 9.6363 2.4552 22 1 12.1156 8.8779 3.7669 23 1 11.8857 8.1823 1.4553 24 6 8.3078 4.5224 0.3897 25 6 6.8643 4.4776 -0.1226 26 1 -1.0502 -0.0005 0.0003 27 1 3.0096 -0.6375 -0.8055 28 1 3.0095 -0.3775 0.9555 29 1 2.5030 2.0964 -0.3096 30 1 5.4328 4.3198 -2.0956 31 1 5.7665 2.5978 -2.3993 32 1 4.0897 3.1948 -2.4087 33 1 5.7228 1.9750 1.8187 34 1 5.6323 3.7317 2.0940 35 1 7.5713 2.8578 3.2986 36 1 8.1690 2.0529 1.8236 37 1 10.2703 7.4385 5.1800 38 1 8.7067 5.5300 0.2727 39 1 8.9182 3.8162 -0.1731 40 1 6.2797 5.2556 0.3685 41 1 6.8555 4.6416 -1.2001 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491711688.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:04 Heat of formation + Delta-G solvation = -23.318739 kcal Electronic energy + Delta-G solvation = -23574.934276 eV Core-core repulsion = 20069.915317 eV Total energy + Delta-G solvation = -3505.018959 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.37061 -40.08776 -38.32515 -36.47991 -35.52956 -34.62899 -33.59572 -32.54567 -31.51223 -28.82598 -28.30144 -27.08086 -25.01490 -23.82464 -22.44605 -21.34734 -20.59908 -19.53286 -18.59718 -17.98373 -17.84295 -17.22854 -16.68175 -16.38240 -16.00186 -15.90054 -15.78370 -15.51478 -15.38995 -14.77027 -14.49622 -14.35966 -14.27186 -13.61862 -13.53582 -13.21954 -13.08873 -12.94143 -12.71428 -12.57243 -12.49706 -12.20027 -11.99000 -11.90278 -11.87590 -11.72465 -11.47624 -10.92675 -10.73047 -10.16453 -9.80194 -9.48475 -9.02877 -8.28964 -6.83458 1.36519 1.41113 1.43243 1.54989 1.58608 1.81592 2.24294 2.36711 2.46641 2.73483 2.96139 3.33336 3.58709 3.69025 3.95061 4.01268 4.06910 4.09198 4.33172 4.40083 4.46207 4.48755 4.52556 4.63040 4.71849 4.74478 4.86513 4.91407 4.96692 4.99072 5.18604 5.25638 5.29377 5.37789 5.71507 5.90854 5.96755 6.13188 6.39195 6.48186 6.55797 6.88150 7.18291 7.43156 8.46118 8.67621 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.031245 B = 0.003177 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.940096 B = 8810.700062 C = 9185.360047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.248 4.248 3 C 0.232 3.768 4 N -0.719 5.719 5 C 0.520 3.480 6 O -0.557 6.557 7 C 0.065 3.935 8 H 0.076 0.924 9 C -0.137 4.137 10 N -0.524 5.524 11 C 0.064 3.936 12 C 0.128 3.872 13 N -0.647 5.647 14 C 0.541 3.459 15 O -0.636 6.636 16 C -0.565 4.565 17 H 0.096 0.904 18 C 0.027 3.973 19 N -0.826 5.826 20 Si 0.998 3.002 21 H -0.258 1.258 22 H -0.277 1.277 23 H -0.247 1.247 24 C 0.123 3.877 25 C 0.049 3.951 26 H 0.255 0.745 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.415 0.585 30 H 0.088 0.912 31 H 0.061 0.939 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.023 0.977 35 H 0.053 0.947 36 H 0.052 0.948 37 H 0.274 0.726 38 H 0.094 0.906 39 H 0.060 0.940 40 H 0.031 0.969 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.924 -5.460 -16.243 24.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.249 4.249 3 C 0.109 3.891 4 N -0.373 5.373 5 C 0.307 3.693 6 O -0.433 6.433 7 C -0.046 4.046 8 H 0.094 0.906 9 C -0.195 4.195 10 N -0.250 5.250 11 C -0.065 4.065 12 C 0.004 3.996 13 N -0.384 5.384 14 C 0.347 3.653 15 O -0.523 6.523 16 C -0.602 4.602 17 H 0.114 0.886 18 C -0.187 4.187 19 N -0.456 5.456 20 Si 0.817 3.183 21 H -0.182 1.182 22 H -0.202 1.202 23 H -0.170 1.170 24 C -0.001 4.001 25 C -0.079 4.079 26 H 0.271 0.729 27 H 0.108 0.892 28 H 0.099 0.901 29 H 0.252 0.748 30 H 0.106 0.894 31 H 0.080 0.920 32 H 0.108 0.892 33 H 0.097 0.903 34 H 0.042 0.958 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.112 0.888 39 H 0.078 0.922 40 H 0.049 0.951 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -17.059 -6.597 -15.535 23.998 hybrid contribution -0.436 1.076 0.884 1.459 sum -17.496 -5.522 -14.651 23.478 Atomic orbital electron populations 1.25864 0.96669 0.95173 0.98647 1.22959 0.94420 1.04682 1.02814 1.17957 0.84000 0.84311 1.02789 1.45928 1.06735 1.10328 1.74311 1.20776 0.81893 0.91332 0.75344 1.90723 1.56151 1.47155 1.49289 1.21706 0.90814 0.92732 0.99368 0.90600 1.21861 1.03964 1.03701 0.89932 1.61694 1.22007 1.31376 1.09920 1.22229 0.96243 1.00106 0.87959 1.21161 0.92307 0.87531 0.98615 1.48167 1.57885 1.24128 1.08207 1.18752 0.79076 0.83398 0.84064 1.90528 1.67564 1.74750 1.19492 1.21457 1.35649 1.07586 0.95477 0.88570 1.27044 0.95440 1.02223 0.94040 1.70196 1.37382 1.34959 1.03068 0.85010 0.77863 0.76285 0.79100 1.18213 1.20203 1.16978 1.21719 0.96285 1.01566 0.80499 1.22649 0.94705 0.87855 1.02712 0.72929 0.89191 0.90084 0.74834 0.89359 0.92037 0.89249 0.90267 0.95846 0.92814 0.92941 0.91640 0.88837 0.92200 0.95071 0.85883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 19.25 74.32 1.43 -0.10 16 2 C -0.25 -3.68 13.46 31.12 0.42 -3.26 16 3 C 0.23 4.03 6.15 84.57 0.52 4.55 16 4 N -0.72 -12.52 5.54 -472.13 -2.61 -15.13 16 5 C 0.52 12.60 5.91 87.66 0.52 13.12 16 6 O -0.56 -18.49 15.73 -3.04 -0.05 -18.54 16 7 C 0.07 1.42 2.47 44.17 0.11 1.53 16 8 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 9 C -0.14 -2.13 8.77 71.98 0.63 -1.49 16 10 N -0.52 -15.76 4.20 -874.40 -3.68 -19.43 16 11 C 0.06 2.29 5.33 86.38 0.46 2.75 16 12 C 0.13 5.71 6.61 86.35 0.57 6.28 16 13 N -0.65 -31.35 3.01 -823.03 -2.48 -33.82 16 14 C 0.54 32.51 7.61 86.36 0.66 33.17 16 15 O -0.64 -44.27 14.53 -4.29 -0.06 -44.34 16 16 C -0.57 -32.08 8.71 24.83 0.22 -31.87 16 17 H 0.10 4.81 5.97 -2.91 -0.02 4.79 16 18 C 0.03 1.52 5.50 85.30 0.47 1.99 16 19 N -0.83 -51.31 11.87 21.83 0.26 -51.05 16 20 Si 1.00 40.69 29.56 68.60 2.03 42.71 16 21 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 22 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16 23 H -0.25 -9.27 7.11 99.48 0.71 -8.57 16 24 C 0.12 4.56 6.45 86.34 0.56 5.12 16 25 C 0.05 1.40 5.28 86.38 0.46 1.86 16 26 H 0.25 0.56 7.80 -4.41 -0.03 0.53 16 27 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.42 4.98 8.45 -92.71 -0.78 4.20 16 30 H 0.09 1.15 6.17 -2.39 -0.01 1.13 16 31 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.08 2.77 6.36 -2.39 -0.02 2.76 16 34 H 0.02 0.87 8.14 -2.38 -0.02 0.86 16 35 H 0.05 2.70 7.04 -2.39 -0.02 2.69 16 36 H 0.05 2.30 8.14 -2.38 -0.02 2.28 16 37 H 0.27 15.39 8.29 -92.71 -0.77 14.62 16 38 H 0.09 3.50 5.57 -2.39 -0.01 3.49 16 39 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.03 0.95 8.14 -2.38 -0.02 0.93 16 41 H 0.12 2.57 5.80 -2.39 -0.01 2.56 16 Total: -1.00 -85.25 342.00 0.69 -84.56 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: 0.27 Total: 21.40 kcal Atomic # 6 Polarization: 26.63 SS G_CDS: 7.01 Total: 33.64 kcal Atomic # 7 Polarization: -110.93 SS G_CDS: -8.51 Total: -119.44 kcal Atomic # 8 Polarization: -62.77 SS G_CDS: -0.11 Total: -62.88 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.71 kcal Total: -85.25 0.69 -84.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491711688.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.241 kcal (2) G-P(sol) polarization free energy of solvation -85.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds