Wall clock time and date at job start Tue Mar 31 2020 03:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99530 * 2 1 4 4 C 1.46894 * 111.00507 * 123.95285 * 2 1 3 5 5 C 1.52996 * 109.46941 * 66.04773 * 4 2 1 6 6 O 1.42901 * 109.47267 * 65.00296 * 5 4 2 7 7 C 1.35912 * 117.00171 * 180.02562 * 6 5 4 8 8 C 1.38753 * 120.47508 * 359.97159 * 7 6 5 9 9 N 1.31806 * 120.68012 * 180.02562 * 8 7 6 10 10 C 1.31875 * 121.78537 * 359.97438 * 9 8 7 11 11 C 1.38215 * 120.88410 * 0.02562 * 10 9 8 12 12 C 1.38576 * 119.22506 * 359.97438 * 11 10 9 13 13 C 1.50701 * 120.81144 * 180.02562 * 12 11 10 14 14 N 1.46500 * 109.46795 * 259.99749 * 13 12 11 15 15 C 1.34783 * 119.99877 * 179.97438 * 14 13 12 16 16 O 1.21690 * 119.99708 * 0.02562 * 15 14 13 17 17 C 1.46372 * 119.99985 * 179.97438 * 15 14 13 18 18 H 1.07998 * 119.99910 * 0.02562 * 17 15 14 19 19 C 1.40047 * 119.99815 * 180.02562 * 17 15 14 20 20 N 1.30679 * 120.00057 * 0.02562 * 19 17 15 21 21 Si 1.86800 * 120.00011 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.46881 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.47057 * 119.99922 * 21 19 17 24 24 H 1.48495 * 109.47161 * 240.00219 * 21 19 17 25 25 H 1.09006 * 109.46792 * 296.04081 * 1 2 3 26 26 H 1.08996 * 109.47961 * 56.04703 * 1 2 3 27 27 H 1.09002 * 109.46792 * 176.04654 * 1 2 3 28 28 H 1.08997 * 109.47153 * 183.95919 * 3 2 1 29 29 H 1.08999 * 109.46968 * 303.95744 * 3 2 1 30 30 H 1.09001 * 109.47068 * 63.95269 * 3 2 1 31 31 H 1.08999 * 109.46825 * 306.04767 * 4 2 1 32 32 H 1.08995 * 109.47318 * 186.04721 * 4 2 1 33 33 H 1.08998 * 109.47152 * 305.00024 * 5 4 2 34 34 H 1.09003 * 109.46883 * 184.99819 * 5 4 2 35 35 H 1.08002 * 119.65515 * 0.04521 * 8 7 6 36 36 H 1.08000 * 119.55788 * 180.28032 * 10 9 8 37 37 H 1.07998 * 120.38321 * 179.97438 * 11 10 9 38 38 H 1.08996 * 109.47115 * 19.99719 * 13 12 11 39 39 H 1.08996 * 109.47188 * 140.00028 * 13 12 11 40 40 H 0.96998 * 120.00381 * 0.02562 * 14 13 12 41 41 H 0.96995 * 119.99633 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9956 -0.7659 1.1375 5 6 1.6317 -2.2425 0.9703 6 8 2.2958 -2.7695 -0.1801 7 6 2.0776 -4.0786 -0.4729 8 6 1.2436 -4.8487 0.3250 9 7 1.0296 -6.1188 0.0452 10 6 1.5919 -6.7055 -0.9934 11 6 2.4349 -6.0037 -1.8344 12 6 2.6873 -4.6657 -1.5767 13 6 3.6001 -3.8663 -2.4705 14 7 4.9232 -3.7630 -1.8501 15 6 5.9092 -3.0883 -2.4740 16 8 5.7002 -2.5646 -3.5524 17 6 7.2311 -2.9846 -1.8540 18 1 7.4164 -3.4491 -0.8968 19 6 8.2554 -2.2831 -2.5020 20 7 8.0309 -1.7206 -3.6600 21 14 9.9425 -2.1513 -1.7111 22 1 9.9374 -2.8698 -0.4114 23 1 10.9585 -2.7588 -2.6080 24 1 10.2731 -0.7213 -1.4854 25 1 -0.3633 0.4512 0.9234 26 1 -0.3635 0.5739 -0.8524 27 1 -0.3633 -1.0253 -0.0709 28 1 3.0827 1.3434 -0.0710 29 1 1.5896 1.9164 -0.8524 30 1 1.7042 1.8724 0.9233 31 1 1.5612 -0.3872 2.0627 32 1 3.0798 -0.6610 1.1755 33 1 0.5534 -2.3388 0.8432 34 1 1.9442 -2.7962 1.8556 35 1 0.7646 -4.4025 1.1841 36 1 1.3878 -7.7473 -1.1918 37 1 2.8914 -6.4924 -2.6824 38 1 3.6894 -4.3634 -3.4364 39 1 3.1865 -2.8679 -2.6125 40 1 5.0900 -4.1808 -0.9908 41 1 8.7403 -1.2345 -4.1086 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000494770205.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:11:01 Heat of formation + Delta-G solvation = -30.522099 kcal Electronic energy + Delta-G solvation = -23521.219085 eV Core-core repulsion = 20015.887765 eV Total energy + Delta-G solvation = -3505.331320 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.63498 -38.48224 -37.16912 -36.96453 -34.16052 -32.42095 -31.31383 -30.80969 -29.50645 -27.70508 -27.04176 -25.23799 -24.75232 -22.89987 -21.90276 -20.92770 -19.60620 -18.08019 -17.31990 -16.74652 -16.51419 -15.96808 -15.26147 -15.21455 -14.96662 -14.86675 -14.35044 -14.12020 -13.93000 -13.40798 -13.26480 -13.22583 -12.66488 -12.48126 -12.37702 -12.07804 -11.89323 -11.81612 -11.76183 -11.27225 -11.25088 -11.10301 -10.97255 -10.82022 -10.42093 -10.16355 -9.46289 -9.36271 -8.81169 -8.42561 -8.31106 -7.52255 -7.40872 -6.13188 -4.57969 1.20468 1.36541 3.15497 3.16419 3.23546 3.28146 3.79758 3.85443 4.16044 4.48276 4.63541 4.65221 4.75125 4.85604 4.92208 5.01305 5.05261 5.14534 5.19631 5.22622 5.26474 5.43838 5.48840 5.56836 5.63212 5.70796 5.75817 5.79437 5.91486 5.96809 6.10936 6.45988 6.66180 6.68328 6.87771 6.92228 7.39604 7.48515 7.99082 8.00082 8.15173 8.39197 9.07941 9.60796 10.66047 10.85342 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.011101 B = 0.005034 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.739582 B = 5561.007453 C = 7283.258986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.538 5.538 3 C 0.026 3.974 4 C 0.056 3.944 5 C 0.059 3.941 6 O -0.274 6.274 7 C 0.097 3.903 8 C 0.005 3.995 9 N -0.455 5.455 10 C 0.051 3.949 11 C -0.119 4.119 12 C -0.079 4.079 13 C 0.180 3.820 14 N -0.757 5.757 15 C 0.558 3.442 16 O -0.580 6.580 17 C -0.543 4.543 18 H 0.066 0.934 19 C 0.088 3.912 20 N -0.768 5.768 21 Si 0.906 3.094 22 H -0.264 1.264 23 H -0.276 1.276 24 H -0.277 1.277 25 H 0.023 0.977 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.022 0.978 31 H 0.054 0.946 32 H 0.092 0.908 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.152 0.848 36 H 0.155 0.845 37 H 0.142 0.858 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.379 0.621 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.275 -1.057 10.512 17.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.262 5.262 3 C -0.122 4.122 4 C -0.072 4.072 5 C -0.017 4.017 6 O -0.185 6.185 7 C 0.048 3.952 8 C -0.153 4.153 9 N -0.165 5.165 10 C -0.106 4.106 11 C -0.139 4.139 12 C -0.088 4.088 13 C 0.055 3.945 14 N -0.412 5.412 15 C 0.362 3.638 16 O -0.463 6.463 17 C -0.580 4.580 18 H 0.085 0.915 19 C -0.131 4.131 20 N -0.397 5.397 21 Si 0.730 3.270 22 H -0.188 1.188 23 H -0.202 1.202 24 H -0.202 1.202 25 H 0.041 0.959 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.040 0.960 31 H 0.072 0.928 32 H 0.111 0.889 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.169 0.831 36 H 0.172 0.828 37 H 0.160 0.840 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.210 0.790 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.628 -1.069 9.542 17.498 hybrid contribution 0.966 0.662 1.207 1.682 sum -13.662 -0.407 10.749 17.388 Atomic orbital electron populations 1.22462 0.87732 1.02176 1.00364 1.61866 1.07484 1.14145 1.42680 1.22388 1.01592 0.88088 1.00110 1.22174 1.02319 0.91048 0.91703 1.22907 0.96768 0.94449 0.87536 1.86366 1.66204 1.20699 1.45251 1.20001 0.95365 0.84975 0.94861 1.22782 1.00499 0.91028 1.01020 1.67436 1.21344 1.10261 1.17468 1.22544 0.96029 1.00327 0.91716 1.22042 0.98033 0.93119 1.00708 1.20120 0.98942 0.94393 0.95316 1.19627 0.83558 0.98071 0.93232 1.46089 1.09551 1.61180 1.24420 1.18202 0.83695 0.77312 0.84618 1.90600 1.82629 1.50153 1.22870 1.20890 0.94407 1.36217 1.06519 0.91534 1.25690 0.99742 0.93547 0.94140 1.70040 1.32417 1.24768 1.12525 0.86353 0.82284 0.78393 0.79926 1.18841 1.20190 1.20209 0.95893 0.91198 0.91448 0.90700 0.91211 0.95969 0.92771 0.88927 0.92002 0.91519 0.83059 0.82762 0.84040 0.92425 0.91498 0.79049 0.92249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.33 60.07 0.56 0.77 16 2 N -0.54 -6.73 4.97 -251.26 -1.25 -7.98 16 3 C 0.03 0.30 9.57 60.07 0.57 0.87 16 4 C 0.06 0.62 5.34 -3.83 -0.02 0.60 16 5 C 0.06 0.66 4.81 37.16 0.18 0.84 16 6 O -0.27 -4.31 9.45 -19.46 -0.18 -4.49 16 7 C 0.10 1.49 6.68 -39.07 -0.26 1.23 16 8 C 0.00 0.06 10.22 -17.37 -0.18 -0.12 16 9 N -0.46 -6.42 10.35 -13.12 -0.14 -6.55 16 10 C 0.05 0.66 11.18 -17.54 -0.20 0.46 16 11 C -0.12 -1.65 9.78 -39.47 -0.39 -2.03 16 12 C -0.08 -1.29 5.30 -104.18 -0.55 -1.85 16 13 C 0.18 3.67 5.54 -5.19 -0.03 3.64 16 14 N -0.76 -17.64 5.54 -62.90 -0.35 -17.99 16 15 C 0.56 16.24 7.75 -12.99 -0.10 16.14 16 16 O -0.58 -19.17 15.02 5.20 0.08 -19.09 16 17 C -0.54 -15.62 9.54 -35.63 -0.34 -15.96 16 18 H 0.07 1.77 7.85 -52.49 -0.41 1.36 16 19 C 0.09 2.49 5.50 -17.36 -0.10 2.40 16 20 N -0.77 -23.36 11.83 55.55 0.66 -22.70 16 21 Si 0.91 20.37 29.56 -169.99 -5.02 15.35 16 22 H -0.26 -5.75 7.11 56.52 0.40 -5.34 16 23 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 24 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 25 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 26 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16 27 H 0.07 0.66 6.37 -51.93 -0.33 0.33 16 28 H 0.07 0.93 8.12 -51.93 -0.42 0.50 16 29 H 0.07 0.74 8.12 -51.93 -0.42 0.32 16 30 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.05 0.47 8.12 -51.93 -0.42 0.05 16 32 H 0.09 1.16 8.06 -51.93 -0.42 0.74 16 33 H 0.06 0.60 5.87 -51.93 -0.30 0.30 16 34 H 0.07 0.62 7.68 -51.93 -0.40 0.22 16 35 H 0.15 1.63 6.32 -52.49 -0.33 1.30 16 36 H 0.16 1.50 8.06 -52.49 -0.42 1.08 16 37 H 0.14 1.72 8.06 -52.49 -0.42 1.30 16 38 H 0.06 1.19 8.04 -51.93 -0.42 0.78 16 39 H 0.07 1.51 7.93 -51.93 -0.41 1.10 16 40 H 0.38 8.07 8.44 -40.82 -0.34 7.73 16 41 H 0.27 7.33 8.29 -40.82 -0.34 6.99 16 LS Contribution 348.32 15.07 5.25 5.25 Total: -1.00 -36.37 348.32 -7.68 -44.05 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -5.88 Total: 7.16 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: -0.84 Total: 6.99 kcal Atomic # 7 Polarization: -54.15 SS G_CDS: -1.08 Total: -55.22 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.11 Total: -23.58 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -36.37 -7.68 -44.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494770205.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.532 kcal (2) G-P(sol) polarization free energy of solvation -36.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds